View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0445_low_10 (Length: 297)
Name: NF0445_low_10
Description: NF0445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 49 - 236
Target Start/End: Complemental strand, 11780350 - 11780163
Alignment:
| Q |
49 |
ggagcagcacagaaaaacaaaactaacagcagcaggcctaactgaagcgccttagcagccagacacaaaaagcagcagcagaaagcagatgctggtagca |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11780350 |
ggagcagcacagaaaaacaaaactaacagcagcaggcctaactgaagcgccttagcagccagacacaaacagcagcagcagaaagcagatgctggtagca |
11780251 |
T |
|
| Q |
149 |
gttccgccaatgctaaaccagacacagccccagtcctaataaccaaacagacccaacagttcttaaactagccgcaatagacaatact |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11780250 |
gttccgccaatgctaaaccagacacagccccactcctaataaccaaacagacccaacagttcttaaactagccgcaatagacaatact |
11780163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 118 times since January 2019
Visitors: 3258