View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445_low_14 (Length: 250)
Name: NF0445_low_14
Description: NF0445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445_low_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 24 - 250
Target Start/End: Complemental strand, 24875580 - 24875354
Alignment:
| Q |
24 |
tcatcattaggaatttgccacaggattcagtttaaaattaagacttattgaaccttaaaagttccatgacaatgaaagtaagcaaagaaagtttaaaact |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24875580 |
tcatcattaggaatttgccacaggattcagtttaaaattaagacttattgaaccttaaaagttccatgacaatgaaagtaagcaaagaaagtttaaaact |
24875481 |
T |
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| Q |
124 |
ttaaactctcattctaggttggtgttttttgagaataaataagatagggaaaggagaacaattgaaaaatgcaactgtaacaacaatgacatctaccaac |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24875480 |
ttaaactctcattctaggttggtgttttttgagaataaataagatagggaaaggagaacaattgaaaaatgcaactgtaacaacaatgacatctaccaac |
24875381 |
T |
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| Q |
224 |
caagttataaacaaggaataaatttca |
250 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
24875380 |
caagctataaacaaggaataaatttca |
24875354 |
T |
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