View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445_low_2 (Length: 425)
Name: NF0445_low_2
Description: NF0445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 396
Target Start/End: Complemental strand, 35697038 - 35696653
Alignment:
| Q |
11 |
cacagacggtgaaggtccaacatccgaacacaacgatccattcgcgttcacgatcacacctttcttcccagtaggaacactaatttcagactcacattca |
110 |
Q |
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| T |
35697038 |
cacagacggtgaaggtccaacatccgaacacaacgatccattcgcgttcacgatcacacctttcttcccagtaggaacactaatttcagactcacattca |
35696939 |
T |
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| Q |
111 |
ccaccgtaaccgttttttccattaggattataaacataatcattaatcgtcgaatcannnnnnncgctttgtgatcgttgaagcgtcatcatatgcttgg |
210 |
Q |
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| T |
35696938 |
ccaccgtaaccgttttttccattaggattataaacataatcattaatcgtcgaatcatttttttcgctttgtgatcgttgaagcgtcatcatatgcttgg |
35696839 |
T |
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| Q |
211 |
catcacaattactgttattgtcatagttttgattctgtttgttaggcttcgttatatcataatattcaacagccgaagaactaagctccgaatacatcgg |
310 |
Q |
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| T |
35696838 |
catcacaattactgttattgtcatagttttgattctgtttgttaggcttcgttatatcataatattcaacagccgaagaactaagctccgaatacatcgg |
35696739 |
T |
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| Q |
311 |
catgcttctcatcgtagcatcgacaacattaacaccaatgttaagaatcccttgtggacgaccagaaggtcgacgaacctgcaagg |
396 |
Q |
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| T |
35696738 |
catgcttctcatcgtagcatcaacaacattaacaccaatgttaagaatcccttgtggacgaccagaaggtcgacgaacctgcaagg |
35696653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 373
Target Start/End: Original strand, 47725280 - 47725359
Alignment:
| Q |
294 |
agctccgaatacatcggcatgcttctcatcgtagcatcga-caacattaacaccaatgttaagaatcccttgtggacgacc |
373 |
Q |
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| T |
47725280 |
agctccgaataaagtggcatgcttctcatcgtgctatcgagcaacgt-aacaccgatgttaagaatcccttgtggacgacc |
47725359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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