View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445_low_6 (Length: 339)
Name: NF0445_low_6
Description: NF0445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 80 - 331
Target Start/End: Original strand, 47128621 - 47128872
Alignment:
| Q |
80 |
atttctcaccatcattcctaacaagttctctaaaaatctcataaggaataaggtctctgattttactatgcaaaggtccacttgggaggttaaaacttcc |
179 |
Q |
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| T |
47128621 |
atttctcaccatcattcctaacaagttctctaaaaatctcataaggaataaggtctctaattttactatgcaaaggtccacttgggaggttaaaacttcc |
47128720 |
T |
|
| Q |
180 |
ttcataaatatcaagtacatcttgaaaagtatcaaactcattaatagttttgtcacacagagatctaagctctggaagcaaaacctgagtgacggatttg |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47128721 |
ttcataaatatcaagtacatcttgaaaagtatcaaactcattaatagttttgtcacacagagatctaagctctggaagcaaaacctgagtgacggatttg |
47128820 |
T |
|
| Q |
280 |
agtgaataagctagaaagtctgaaaactttacatgaccaaactgttcatctc |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47128821 |
agtgaataagctagaaagtctgaaaactttacatgaccaaactgttcatctc |
47128872 |
T |
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