View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445_low_9 (Length: 307)
Name: NF0445_low_9
Description: NF0445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 80 - 307
Target Start/End: Complemental strand, 52288821 - 52288592
Alignment:
| Q |
80 |
attcacaaaccaaatttgcttgcatgggaatttgtaaataagacatatgtaagattccaaaatggctcttaaatttatagacaaacttttaacaaaatgc |
179 |
Q |
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| T |
52288821 |
attcacaaaccaaatttgcttgcatgggaatttgtaaataagacatatataagattccaaaatggctcttaaatttatagacaaacttttaacaaaatgc |
52288722 |
T |
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| Q |
180 |
accataagtcgtgggtc--tattatgctcgacaaatactctatttactgcccacagattcctgtcttctttccaatctcttctgctaacatagataattg |
277 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52288721 |
accataagtcgtgggtcaatattatgctcgacaaatactctatttactgcccacagattcctgtcttctttccaatctcttctgctaaaatagataattg |
52288622 |
T |
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| Q |
278 |
tagttcactgttaaatgaattttgttttaa |
307 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
52288621 |
tagttcactgttaaatgaattttgttttaa |
52288592 |
T |
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