View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0446_high_4 (Length: 441)
Name: NF0446_high_4
Description: NF0446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0446_high_4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 33 - 441
Target Start/End: Complemental strand, 25951722 - 25951308
Alignment:
| Q |
33 |
ttgaagccattgatgactctgctgcttccattgttatcatttcacctaactatgctgattctcattggtgtcttgatgaactcaacaggatttgtgatct |
132 |
Q |
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| T |
25951722 |
ttgaagccattgatgactctgctgcttccattgttatcatttcacctaactatgctgattctcattggtgtcttgatgaactcaacaggatttgtgatct |
25951623 |
T |
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| Q |
133 |
tcaaaggcttattattcctgttttctataaggttgatccatctcatgtcaggaaacaattgggtccttttcaagatgggtttaattatcttgaaaagagg |
232 |
Q |
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| T |
25951622 |
tgaaaggcttattattcctgttttctataaggttgatccatctcatgtcaggaaacaattgggtccttttcaagatgggtttaattatcttgaaaagagg |
25951523 |
T |
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| Q |
233 |
tttgcaaatgaaaaagataaaattttgaagtggagagattctatgcttaaaataggtggtcttgctggctttgttttcaattctaggtatatctatactt |
332 |
Q |
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| T |
25951522 |
tttgcaaatgaaaaagataaaattttgaagtggagagactctatgcttaaaataggtggtcttgctggctttgttttcaattctaggtatatctatattt |
25951423 |
T |
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| Q |
333 |
tgtaatcacca------nnnnnnnnnnnnnnaatggtagttgaagtagtgtcacttacacggacaccacacaccgataccactaataattcaagatcaaa |
426 |
Q |
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| T |
25951422 |
tgtaatcaccattttttttattttattttgtaatggtagttgaagtagtgtcacttacacggacaccacacaccgataccactaataactcaagatcaaa |
25951323 |
T |
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| Q |
427 |
cactgcagatttcaa |
441 |
Q |
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| T |
25951322 |
cactgcagatttcaa |
25951308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 33 - 441
Target Start/End: Complemental strand, 25960973 - 25960559
Alignment:
| Q |
33 |
ttgaagccattgatgactctgctgcttccattgttatcatttcacctaactatgctgattctcattggtgtcttgatgaactcaacaggatttgtgatct |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25960973 |
ttgaagccattgatgactctgctgcttccattgttatcatttcacctaactatgctgattctcattggtgtcttgatgaactcaacaggatttgtgatct |
25960874 |
T |
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| Q |
133 |
tcaaaggcttattattcctgttttctataaggttgatccatctcatgtcaggaaacaattgggtccttttcaagatgggtttaattatcttgaaaagagg |
232 |
Q |
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| T |
25960873 |
tgaaaggcttattattcctgttttctataaggttgatccatctcatgtcaggaaacaattgggtccttttcaagatgggtttaattatcttgaaaagagg |
25960774 |
T |
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| Q |
233 |
tttgcaaatgaaaaagataaaattttgaagtggagagattctatgcttaaaataggtggtcttgctggctttgttttcaattctaggtatatctatactt |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25960773 |
tttgcaaatgaaaaagataaaattttgaagtggagagactctatgcttaaaataggtggtcttgctggctttgttttcaattctaggtatatctatattt |
25960674 |
T |
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| Q |
333 |
tgtaatcacca------nnnnnnnnnnnnnnaatggtagttgaagtagtgtcacttacacggacaccacacaccgataccactaataattcaagatcaaa |
426 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25960673 |
tgtaatcaccattttttttattttattttgtaatggtagttgaagtagtgtcacttacacggacaccacacaccgataccactaataactcaagatcaaa |
25960574 |
T |
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| Q |
427 |
cactgcagatttcaa |
441 |
Q |
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||||||||||||||| |
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| T |
25960573 |
cactgcagatttcaa |
25960559 |
T |
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