View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0446_low_1 (Length: 633)
Name: NF0446_low_1
Description: NF0446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0446_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 21 - 605
Target Start/End: Original strand, 2928169 - 2928751
Alignment:
| Q |
21 |
agcacagaaaaaagccataccagatcattgttagatagtcgtaatagaatgttacaaaggtgatatagatgcatcaatagaaaacttaaggctactgatc |
120 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2928169 |
agcacagaaaaaagccataccagatcactgttagatagtcgtaatagaatgttacaaaggtgatatagatgcatcaatagaaaacttaaggccactgatc |
2928268 |
T |
|
| Q |
121 |
atgaacctatctataaggaagaataagtagcataaacagagtcattgctcataaattcttaaaatatttatttagtttctgaagtatcttccttaaaagc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2928269 |
atgaacctatctataaggaagaataagtagcataaacagagtcattgctcataaattcttaaaatatttatttagtttctgaagtatcttccttaaaagc |
2928368 |
T |
|
| Q |
221 |
tctgtcaatgaaatgaaaatgaatggttcagaaaagaaagataatgaattaatcataccgccggttgaaaggtagtctattgacaagtggtaacacactt |
320 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2928369 |
tctatcaatgaaatgaaaatgaatggtttagaaaagaaagataatgaattaatcataccgccggttgaaaggtagtctattgacaagtggtaacacactt |
2928468 |
T |
|
| Q |
321 |
ttttcataatcaatggtgacaaatatctgaagcatcctatgtatagcataaaaccacaagttctttgttacctgttcagcaaagtgtcgagcaacaacac |
420 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2928469 |
ttttcataatcaatggtgacaaat-----aagcatcctatgtatagcataaaaccacaagttctttgttacctgttcaacaaagtgtcgagcaacaacac |
2928563 |
T |
|
| Q |
421 |
gcgcaacctaattaacacgaaaaccaacataaaccaataagtctctattatcattcattagctgaaattagcaagtggcctccgagacctatacatatta |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2928564 |
gcgcaacctaattaacacgaaaaccaacataaaccaataagtctctattatcattcattagctgaaattagcaagtggcctccgagaccta--------- |
2928654 |
T |
|
| Q |
521 |
aatcctagagttaaattacggtccacaactgcaagtgcggtc---------------ataattttttacaaaaacatcacaaccgcaattgactacattt |
605 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2928655 |
---cctagaattaaattacggtccacaactgcaagtgcggtcataatataaaatattataattttttacaaaaacatcacaaccgcaattgactacattt |
2928751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 220 - 496
Target Start/End: Complemental strand, 2310703 - 2310431
Alignment:
| Q |
220 |
ctctgtcaatgaaatgaaaatgaatggttcagaaaagaaagataatgaattaatcataccgccggttgaaaggtagtctattgacaagtggtaacacact |
319 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || ||||||||||||| || || ||||||| ||| || |
|
|
| T |
2310703 |
ctctatcaatgaaatgaaaatgaatggtttagaaaagaaagataatgaattagtcataccgacgattgaaaggtagtcgatcgataagtggtgacaatct |
2310604 |
T |
|
| Q |
320 |
tttttcataatcaatggtgacaaatatctgaagcatcctatgtatagcataaaaccacaagttctttgttacctgttcagcaaagtgtcgagcaacaaca |
419 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
2310603 |
tttttcaaaatcaatggtgacaaatatctcaagcatcctatgtatagcataaaaccagaagctctttgttatcttttcagcaaagtgtcgagcaacaaca |
2310504 |
T |
|
| Q |
420 |
cgcgcaacctaattaacacgaaaaccaacataaaccaataagtctctattatcattcattagctgaaattagcaagt |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||| |
|
|
| T |
2310503 |
tgcgcaacctaattaacacgaaaaccaacataaactgattagtctctattat----cattagctgaaattagcaagt |
2310431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 2310985 - 2310927
Alignment:
| Q |
131 |
ctataaggaagaataagtagcataaacagagtcattgctcataaattcttaaaatattt |
189 |
Q |
| |
|
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2310985 |
ctataaggaagaataattaacataaacagagccattgctcataaattcttaaaatattt |
2310927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 504 - 605
Target Start/End: Complemental strand, 2310397 - 2310286
Alignment:
| Q |
504 |
gagacctatacatattaaatcctagagttaaattacggtccacaactgcaagtgcggtcataat----------tttttacaaaaacatcacaaccgcaa |
593 |
Q |
| |
|
||||||||| ||||||||||| |||| ||||||| ||||||||||||| || ||| |||| ||| ||| ||||||||| |||||||||||| |
|
|
| T |
2310397 |
gagacctatccatattaaatcatagaattaaattgcggtccacaactggaaatgcagtcacaatatattaaaattttctacaaaaacgtcacaaccgcaa |
2310298 |
T |
|
| Q |
594 |
ttgactacattt |
605 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2310297 |
ttgactacattt |
2310286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University