View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0446_low_3 (Length: 571)
Name: NF0446_low_3
Description: NF0446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0446_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 100 - 438
Target Start/End: Original strand, 25960304 - 25960642
Alignment:
| Q |
100 |
tccttgagaatatagacagtaagcaccactgatcaaaatttattattcaagtaatttcaacaatagttttaattaaaattaagcttgcttcaacgggcat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25960304 |
tccttgagaatatagacagtaagcaccactgatcaaaatttattattcaagtaatttcaacaatagttttaattaaaattaagcttgcttcaacgggcat |
25960403 |
T |
|
| Q |
200 |
aataccaaaaagagtgatgcagcaccgacactttgagattgaggggcaacacatgttgatatataattctatgtagtcaccaaagttccgcattcacaca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25960404 |
aataccaaaaagagtgatgcagcaccgacactttgagattgaggggcaacacatgttgatatataattctatgtagtcaccaaagttccgcattcacata |
25960503 |
T |
|
| Q |
300 |
gtcagtgaccgttggatcgagatcaaacaatgcagatttcaagatgagtatctacttgaaatctgcagtgtttgatcttgaattattagtggtatcggtg |
399 |
Q |
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|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25960504 |
gttagtgaccgttggatcgagatcagacaatgcagatttcaagatgagtatctacttgaaatctgcagtgtttgatcttgagttattagtggtatcggtg |
25960603 |
T |
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| Q |
400 |
tgtggtgtccgtgtaagtgacactacttcaactaccatt |
438 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
25960604 |
tgtggtgtccgtgtaagtgacactacttcaactaccatt |
25960642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 100 - 438
Target Start/End: Original strand, 25951054 - 25951391
Alignment:
| Q |
100 |
tccttgagaatatagacagtaagcaccactgatcaaaatttattattcaagtaatttcaacaatagttttaattaaaattaagcttgcttcaacgggcat |
199 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| |||| |
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| T |
25951054 |
tccttgagaatatagagagtaagcaccactgatcaaaacttattattcaagtaatttcaaaaatagttttaattgaaattaagcgtgcttcaacgagcat |
25951153 |
T |
|
| Q |
200 |
aataccaaaaagagtgatgcagcaccgacactttgagattgaggggcaacacatgttgatatataattctatgtagtcaccaaagttccgcattcacaca |
299 |
Q |
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||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
25951154 |
aataccaaaaacagtgatgcagcactgacacttc-agattgaggggcaacacatgttgatatataattttatgtagtcaccaaagttccgcattcacata |
25951252 |
T |
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| Q |
300 |
gtcagtgaccgttggatcgagatcaaacaatgcagatttcaagatgagtatctacttgaaatctgcagtgtttgatcttgaattattagtggtatcggtg |
399 |
Q |
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|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25951253 |
gttagtgaccgttggatcgagatcagacaatgcagatttcaagatgagtatctacttgaaatctgcagtgtttgatcttgagttattagtggtatcggtg |
25951352 |
T |
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| Q |
400 |
tgtggtgtccgtgtaagtgacactacttcaactaccatt |
438 |
Q |
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| T |
25951353 |
tgtggtgtccgtgtaagtgacactacttcaactaccatt |
25951391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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