View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0446_low_4 (Length: 505)
Name: NF0446_low_4
Description: NF0446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0446_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 39296557 - 39296082
Alignment:
| Q |
1 |
atacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacattcttgtttcttaatcatctttgaaatggttatgtgataggtttttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296557 |
atacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacactcttgtttcttaatcatctttgaaatggttatgtgataggtttttg |
39296458 |
T |
|
| Q |
101 |
aacgaggctcgtaacttacagttaaaagaatgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacattgtggtg |
200 |
Q |
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||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39296457 |
aactaggctcacaacttactgttaaaagaatgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacgttgtggtg |
39296358 |
T |
|
| Q |
201 |
aagatgacgaataagaggaaaagctgagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgttttcatcg |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296357 |
aagatgacgaataaaaggaaaagctgagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgttttcatcg |
39296258 |
T |
|
| Q |
301 |
ttgtttttgatcgtgagaacaagagaataaactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagtta |
400 |
Q |
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|||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296257 |
ttgtttgtgatcgtgagaacgagagaatatactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagtta |
39296158 |
T |
|
| Q |
401 |
ttgctgttttgattctaagagaaacacaaggattccctatagttttgacaacaaaccagtaaagaagtcttaaaac |
476 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296157 |
ttgctgttttgattctaagagaaacacaaggtttccctatagttttgacaacaaaccagtaaagaagtcttaaaac |
39296082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 39289677 - 39289199
Alignment:
| Q |
1 |
atacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacattcttgtttcttaatcatctttgaaatggttatgtgataggtttttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |
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| T |
39289677 |
atacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacattcttgtttcttaaccatctttaaaatggttaagtgataggtttttg |
39289578 |
T |
|
| Q |
101 |
aacgaggctcgtaacttacagttaaaagaatgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacattgtggtg |
200 |
Q |
| |
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||| ||| || ||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
39289577 |
aactaggttcataacttatagtaagaagaatgaataaccatagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtg |
39289478 |
T |
|
| Q |
201 |
aagatgacgaataagaggaaaagctgagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaag---tgttttca |
297 |
Q |
| |
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||||| ||||||| |||||||||| ||||||| |||||||| ||| ||||| |||||||||||||| ||||| ||||| ||||||| || ||| |
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| T |
39289477 |
gagatgtcgaataactggaaaagctgcaagcgaagagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttg |
39289378 |
T |
|
| Q |
298 |
tcgttgtttttgatcgtgagaacaagagaataaactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaag |
397 |
Q |
| |
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|||||| ||||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39289377 |
tcgttgcttttgatcgtgagtacgagagaataaactagccatgctatcgaagaaacgccgcagccactatgaattcctccaatacattgaagaaatgaag |
39289278 |
T |
|
| Q |
398 |
ttattgctgttttgattctaagagaaacacaaggattccctatagttttgacaacaaaccagtaaagaagtcttaaaac |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39289277 |
ttattgctgttttgattctaagagaaacacaaggcttccctatagttttgacaacaaaccagtaaagaagtcttaaaac |
39289199 |
T |
|
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