View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0446_low_6 (Length: 352)

Name: NF0446_low_6
Description: NF0446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0446_low_6
NF0446_low_6
[»] chr5 (1 HSPs)
chr5 (30-343)||(36233720-36234037)
[»] scaffold0352 (1 HSPs)
scaffold0352 (86-311)||(8541-8754)
[»] chr7 (2 HSPs)
chr7 (58-311)||(19596504-19596764)
chr7 (58-311)||(19754570-19754830)
[»] chr4 (1 HSPs)
chr4 (88-205)||(30219203-30219319)
[»] chr3 (3 HSPs)
chr3 (58-296)||(39286500-39286738)
chr3 (261-311)||(27479387-27479437)
chr3 (104-205)||(27479500-27479599)
[»] chr1 (3 HSPs)
chr1 (105-210)||(29871754-29871859)
chr1 (58-195)||(33906169-33906309)
chr1 (58-218)||(26233209-26233370)
[»] chr2 (1 HSPs)
chr2 (107-212)||(35283338-35283443)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 30 - 343
Target Start/End: Original strand, 36233720 - 36234037
Alignment:
Q  30 ctatgaagcagtaatatgnnnnnnnnaaaagcaagattttattaaattgaatacaaggggtactccaagtcgattacaataagtcaagaaattgcatgtt 129  Q
    ||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  36233720 ctatgaagcagtaatatgttttttttaaaagcaagattttattaaattgaatacaaggg-tactccaagtccattacaataagtcaagaaattacatgtt 36233818  T
Q  130 ttgaagatatacaatggggttcgaccactaatccgagaaaacaaattttttattatgcccctccccacatatgaactaagatcacgata-----cttata 224  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||      |||      
T  36233819 ttgaagatatacaatggggttcaaccactaatccgagaaaacaaattttttattatgcccctccctacatatgaactaagatcacgatagacgctttacg 36233918  T
Q  225 agattgaccacttctaaagaatttgcaactttacttttaaagacaacatcattatgctccatccaattacaccacgccgttgttaacgaaacagtattat 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||    
T  36233919 agattgaccacttctaaagaatttgcaactttacttttaaagacaacatcattatgctccatccaattacaccatgccgttgttaacgaagcagtaatat 36234018  T
Q  325 ctacccaccaataatactt 343  Q
     ||  |||| |||||||||    
T  36234019 gtagacaccgataatactt 36234037  T

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Target: scaffold0352 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 86 - 311
Target Start/End: Complemental strand, 8754 - 8541
Alignment:
Q  86 ggggtactccaagtcgattacaataagtcaagaaattgcatgttttgaagatatacaatggggttcgaccactaatccgagaaaacaaattttttattat 185  Q
    ||||||||| ||| | |||| |||||||||| ||||  ||||||||||||| |||||||||||||| | ||| ||||| |||||| |||   |||||||     
T  8754 ggggtactcaaagcccattataataagtcaaaaaataacatgttttgaagacatacaatggggttcaagcaccaatccaagaaaa-aaaaaatttattac 8656  T
Q  186 gcccctccccacatatgaactaagatcacgatacttataagattgaccacttctaaagaatttgcaactttacttttaaagacaacatcattatgctcca 285  Q
    ||||||||||| |||||||| || |||||||||           |||||| || |||| |||||||||||| | ||||| || |||||||||||| ||||    
T  8655 gcccctccccatatatgaaccaaaatcacgata-----------gaccacctccaaagcatttgcaactttgcctttaatgagaacatcattatgttcca 8567  T
Q  286 tccaattacaccacgccgttgttaac 311  Q
    ||||| |||||||| |||||||||||    
T  8566 tccaaatacaccaccccgttgttaac 8541  T

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Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 58 - 311
Target Start/End: Complemental strand, 19596764 - 19596504
Alignment:
Q  58 aagcaagattttattaaattgaatacaaggggtactccaagtcgattacaat-aagtcaagaaattgcatgttttgaagatatacaatggggttcgacca 156  Q
    ||||||||||||||||||  |  |||| ||||||||| ||| | |||||||  |||||| |||||| |||| |||||| | || ||||||||||| || |    
T  19596764 aagcaagattttattaaaacgtgtacatggggtactcgaagcccattacaaagaagtcaggaaattacatgctttgaatacatgcaatggggttcaacaa 19596665  T
Q  157 ctaatccgagaaaacaaattttttattatgcccctccccacatatgaactaagatcacgata----ctt-ataagattgaccacttctaaagaatttgca 251  Q
    | ||||| ||||||||||  |||||||| ||||||||||||| |||||| ||||||||||||    ||| ||  |||  |||||||| |||| ||||| |    
T  19596664 ccaatccaagaaaacaaaagttttattacgcccctccccacaaatgaaccaagatcacgatagacgcttaatgtgatctaccacttccaaagcatttgaa 19596565  T
Q  252 acttt-acttttaaagacaacatcattatgctccatccaattacaccacgccgttgttaac 311  Q
    |||||  ||||| |||| || |||||||  |||||||||| ||||||||| ||||||||||    
T  19596564 actttgccttttgaagagaatatcattacactccatccaaatacaccacgtcgttgttaac 19596504  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 58 - 311
Target Start/End: Original strand, 19754570 - 19754830
Alignment:
Q  58 aagcaagattttattaaattgaatacaaggggtactccaagtcgattacaat-aagtcaagaaattgcatgttttgaagatatacaatggggttcgacca 156  Q
    ||||||||||||||||||  |  |||| ||||||||| ||| | |||||||  |||||| ||||||  ||| |||||| | || ||||  ||||| ||||    
T  19754570 aagcaagattttattaaaacgtgtacatggggtactcaaagcccattacaaagaagtcaggaaattatatgctttgaatacatgcaatttggttcaacca 19754669  T
Q  157 ctaatccgagaaaacaaattttttattatgcccctccccacatatgaactaagatcacgata-----cttataagattgaccacttctaaagaatttgca 251  Q
    | ||||| ||||||||||  |||||||| ||||||||||||| |||||| ||||||||||||      ||||  |||  |||||||| |||| ||||| |    
T  19754670 ccaatccaagaaaacaaaagttttattacgcccctccccacaaatgaaccaagatcacgatagacgctttatgtgatctaccacttccaaagcatttgaa 19754769  T
Q  252 acttt-acttttaaagacaacatcattatgctccatccaattacaccacgccgttgttaac 311  Q
    |||||  ||||| |||| || ||||||| |||| |||||| ||||||||| ||||||||||    
T  19754770 actttgccttttgaagagaatatcattacgctcaatccaaatacaccacgtcgttgttaac 19754830  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 205
Target Start/End: Original strand, 30219203 - 30219319
Alignment:
Q  88 ggtactccaagtcgattacaataagtcaagaaattgcatgttttgaagatatacaatggggttcgaccactaatccgagaaaacaaattttttattatgc 187  Q
    ||||||| ||| | ||||||||||||||||||||| ||||||||||||| ||| ||| |||||  ||||| |||| ||| ||||||||||||||||||||    
T  30219203 ggtactcgaagcccattacaataagtcaagaaattacatgttttgaagacatataatagggtttaaccaccaatctgaggaaacaaattttttattatgc 30219302  T
Q  188 ccctccccacatatgaac 205  Q
    ||||||||| ||||||||    
T  30219303 ccctcccca-atatgaac 30219319  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 296
Target Start/End: Complemental strand, 39286738 - 39286500
Alignment:
Q  58 aagcaagattttattaaattgaatacaaggggtactccaagtcgattacaataagtcaagaaattgcatgttttgaagatatacaatggggttcgaccac 157  Q
    |||||||||||| |||||| || |||||| ||||||| | |   ||||||||||||||| ||||| ||||| |  |||| |||||||||||||| |||||    
T  39286738 aagcaagattttgttaaatcgagtacaagaggtactcgatggtcattacaataagtcaataaattacatgtgtgaaagacatacaatggggttcaaccac 39286639  T
Q  158 taatccgagaaaacaaattttttattatgcccctccccacatatgaactaagatcacgata-----cttataagattgaccacttctaaagaatttgcaa 252  Q
      ||| |||  ||||||||||| |||| | ||||   ||||| ||||| ||||||||||||      ||||  |||  ||||| || |||  ||||||||    
T  39286638 cgatctgag--aacaaatttttcattacgtccct---cacatttgaaccaagatcacgatagacgctttatgtgatcaaccacctccaaatcatttgcaa 39286544  T
Q  253 ctttacttttaaagacaacatcattatgctccatccaattacac 296  Q
    |||||  |||||||| |||||||||| |||||||| || |||||    
T  39286543 ctttatctttaaagagaacatcattacgctccatcaaaatacac 39286500  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 27479437 - 27479387
Alignment:
Q  261 ttaaagacaacatcattatgctccatccaattacaccacgccgttgttaac 311  Q
    ||||||| |||||||||| |||||||| || ||||||||||||||||||||    
T  27479437 ttaaagagaacatcattacgctccatctaaatacaccacgccgttgttaac 27479387  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 205
Target Start/End: Complemental strand, 27479599 - 27479500
Alignment:
Q  104 tacaataagtcaagaaattgcatgttttgaagatatacaatggggttcgaccactaatccgagaaaacaaattttttattatgcccctccccacatatga 203  Q
    |||||||||  ||||| || | |||||| |||| |||||||| ||||| ||||| ||| | ||||||||  |||||||||| |||| | |||||||||||    
T  27479599 tacaataagcaaagaagttacgtgttttaaagacatacaatgaggttcaaccaccaattcaagaaaaca--ttttttattacgcccttacccacatatga 27479502  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 29871754 - 29871859
Alignment:
Q  105 acaataagtcaagaaattgcatgttttgaagatatacaatggggttcgaccactaatccgagaaaacaaattttttattatgcccctccccacatatgaa 204  Q
    |||||||||| | ||||| ||||||| | ||| ||||||| |||||| ||||| |||  ||||||| ||| |||||||||||||| |||||||| |||||    
T  29871754 acaataagtcgaaaaattacatgtttagtagacatacaattgggttcaaccaccaatatgagaaaataaagtttttattatgcccttccccacaaatgaa 29871853  T
Q  205 ctaaga 210  Q
    | ||||    
T  29871854 cgaaga 29871859  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 195
Target Start/End: Complemental strand, 33906309 - 33906169
Alignment:
Q  58 aagcaagatttt-attaaattgaatacaaggggtactccaagtcgattacaataagtcaagaaa-ttgcatgttttgaagatatacaatggggttcgacc 155  Q
    |||||||||||| ||||||  ||||||||| | ||||| ||| | |||||||||||| || ||| || ||| ||||||||||||||||||  |||| |||    
T  33906309 aagcaagatttttattaaaacgaatacaagagatactcgaagcctattacaataagtaaaaaaaattacatattttgaagatatacaatgttgttcaacc 33906210  T
Q  156 actaatccgagaaaacaaattttttattatgc-ccctcccc 195  Q
    ||  |||| ||||||||| |||||||| |||| ||||||||    
T  33906209 accgatcctagaaaacaatttttttatcatgctccctcccc 33906169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 218
Target Start/End: Original strand, 26233209 - 26233370
Alignment:
Q  58 aagcaagattttattaaattgaatacaaggggtactccaagtcgattaca--ataagtcaagaaattgcatgttttgaagatatacaatggggttcgacc 155  Q
    |||||||||||||| |||  ||  |||| |||||||||||  | ||||||  ||||||||||||||| |||  |||||||| ||||||| | |||| |||    
T  26233209 aagcaagattttataaaaaggagaacaatgggtactccaaacccattacataataagtcaagaaattacatactttgaagacatacaat-gagttcaacc 26233307  T
Q  156 actaatccgagaaaacaaattttttattatgcccctccccacatatgaactaagatcacgata 218  Q
    || |||   | |||||||| |||||| ||||| ||| |||| |||| ||| |||| |||||||    
T  26233308 accaatataaaaaaacaaaatttttaatatgctccttcccaaatataaaccaagaccacgata 26233370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 35283338 - 35283443
Alignment:
Q  107 aataagtcaagaaattgcatgttttgaagatatacaatggggttcgaccactaatccgagaaaacaaattttttattatgcccctccccacatatgaact 206  Q
    |||||||||||||||| |||| || ||||| || |||| |||| | ||||| | |  ||||||||||||||||||||| | |||||| |||| ||||||     
T  35283338 aataagtcaagaaattacatgcttcgaagacatccaattgggtccaaccaccattatgagaaaacaaattttttattacgtccctcctcacaaatgaacc 35283437  T
Q  207 aagatc 212  Q
    ||||||    
T  35283438 aagatc 35283443  T

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