View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0447-Insertion-1 (Length: 1064)

Name: NF0447-Insertion-1
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0447-Insertion-1
NF0447-Insertion-1
[»] chr1 (14 HSPs)
chr1 (8-628)||(50029338-50029959)
chr1 (622-1053)||(50030588-50031025)
chr1 (793-1049)||(13509846-13510116)
chr1 (792-1049)||(47655793-47656065)
chr1 (797-947)||(6706060-6706208)
chr1 (792-935)||(35604735-35604878)
chr1 (793-936)||(46406343-46406486)
chr1 (877-947)||(7385231-7385301)
chr1 (852-982)||(11051140-11051279)
chr1 (831-917)||(11829037-11829123)
chr1 (853-943)||(4485209-4485299)
chr1 (831-908)||(44740106-44740182)
chr1 (851-917)||(46033733-46033799)
chr1 (871-917)||(27575973-27576019)
[»] chr5 (17 HSPs)
chr5 (179-628)||(7698359-7698805)
chr5 (793-943)||(31905352-31905502)
chr5 (8-145)||(7699118-7699257)
chr5 (801-947)||(37066581-37066727)
chr5 (792-939)||(41040166-41040313)
chr5 (798-1049)||(41742127-41742393)
chr5 (789-943)||(39236922-39237076)
chr5 (791-939)||(27739381-27739529)
chr5 (791-1053)||(19356420-19356698)
chr5 (790-943)||(33229123-33229276)
chr5 (792-939)||(21022662-21022809)
chr5 (799-939)||(7073305-7073445)
chr5 (793-939)||(21022007-21022150)
chr5 (831-983)||(8958480-8958640)
chr5 (805-939)||(53697-53830)
chr5 (795-933)||(11018465-11018602)
chr5 (853-911)||(32872640-32872698)
[»] chr2 (11 HSPs)
chr2 (794-1052)||(35458087-35458360)
chr2 (789-947)||(17480732-17480890)
chr2 (793-982)||(37640739-37640937)
chr2 (790-1049)||(43342182-43342455)
chr2 (792-982)||(7473439-7473638)
chr2 (790-943)||(14033291-14033444)
chr2 (792-943)||(13892673-13892824)
chr2 (792-943)||(14032798-14032949)
chr2 (853-982)||(3739026-3739163)
chr2 (805-943)||(37996653-37996790)
chr2 (871-939)||(2443725-2443793)
[»] chr3 (15 HSPs)
chr3 (793-1049)||(48254409-48254680)
chr3 (793-982)||(39251398-39251596)
chr3 (790-980)||(45150517-45150716)
chr3 (790-939)||(31813320-31813469)
chr3 (798-982)||(42074320-42074512)
chr3 (794-893)||(11257748-11257847)
chr3 (831-982)||(51229688-51229847)
chr3 (790-982)||(28182289-28182490)
chr3 (797-982)||(48180996-48181189)
chr3 (798-939)||(33025828-33025968)
chr3 (798-939)||(53687407-53687547)
chr3 (797-917)||(51407391-51407510)
chr3 (853-939)||(42274500-42274586)
chr3 (871-945)||(52692005-52692079)
chr3 (891-982)||(11263711-11263811)
[»] scaffold0068 (1 HSPs)
scaffold0068 (793-935)||(37619-37761)
[»] chr8 (9 HSPs)
chr8 (790-947)||(8416581-8416738)
chr8 (789-947)||(45276425-45276583)
chr8 (792-1049)||(22936475-22936747)
chr8 (804-982)||(35802322-35802509)
chr8 (798-933)||(36821663-36821797)
chr8 (831-940)||(33165751-33165860)
chr8 (788-909)||(44238769-44238889)
chr8 (793-982)||(35164359-35164551)
chr8 (856-943)||(924086-924173)
[»] chr6 (4 HSPs)
chr6 (789-946)||(365509-365666)
chr6 (793-939)||(21517387-21517533)
chr6 (822-947)||(10683120-10683243)
chr6 (871-943)||(31746215-31746287)
[»] chr4 (14 HSPs)
chr4 (787-947)||(28963890-28964050)
chr4 (792-939)||(38767712-38767859)
chr4 (793-939)||(22606390-22606536)
chr4 (790-939)||(52058282-52058431)
chr4 (792-982)||(30418375-30418575)
chr4 (797-926)||(29386075-29386203)
chr4 (798-982)||(53663613-53663805)
chr4 (828-936)||(48406933-48407041)
chr4 (842-982)||(53404089-53404238)
chr4 (831-982)||(49723744-49723903)
chr4 (871-945)||(51834272-51834346)
chr4 (853-982)||(45105789-45105926)
chr4 (852-917)||(26457092-26457157)
chr4 (948-1031)||(48407038-48407126)
[»] chr7 (12 HSPs)
chr7 (795-1049)||(25472670-25472939)
chr7 (797-947)||(30139851-30140001)
chr7 (793-947)||(37371001-37371155)
chr7 (797-939)||(12909155-12909297)
chr7 (798-982)||(25970360-25970553)
chr7 (798-982)||(14999797-14999988)
chr7 (795-943)||(26826306-26826454)
chr7 (791-982)||(30825111-30825310)
chr7 (798-982)||(43664792-43664984)
chr7 (852-911)||(39857058-39857117)
chr7 (871-945)||(41064609-41064683)
chr7 (944-982)||(26827741-26827779)
[»] scaffold0808 (1 HSPs)
scaffold0808 (801-947)||(4021-4166)
[»] scaffold0097 (1 HSPs)
scaffold0097 (829-982)||(33040-33202)
[»] scaffold0069 (1 HSPs)
scaffold0069 (853-940)||(16797-16884)
[»] scaffold0006 (1 HSPs)
scaffold0006 (853-943)||(91516-91608)


Alignment Details
Target: chr1 (Bit Score: 586; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 8 - 628
Target Start/End: Original strand, 50029338 - 50029959
Alignment:
Q  8 taaagatttgaagggtaggcggccagaggaaattaaaaataagttgctggtagactttgatccatcaaggtgctttatcaaatatttagaggtaagtaca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50029338 taaagatttgaagggtaggcggccagaggaaattaaaaataagttgctggtagactttgatccatcaaggtgctttatcaaatatttagaggtaagtaca 50029437  T
Q  108 attaaaattttgattttgaacatactggtattgtttccctctgttggttgaggaaggacacgacctttgaaaggtgaagttggaaaagggtttgtgagta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50029438 attaaaattttgattttgaacatactggtattgtttccctctgttggttgaggaaggacacgacctttgaaaggtgaagttggaaaagggtttgtgagta 50029537  T
Q  208 tat-actttctcaagccaccaaggctcgcgaattaacgtcgattatgtataaatgagaatattttgtctcttgtcaattttaccaattagaaaagcaatt 306  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50029538 tattactttctcaagccaccaaggctcgcaaattaacgtcgattatgtataaatgagaaaattttgtctcttgtcaattttaccaattagaaaagcaatt 50029637  T
Q  307 ttggttagcaagaagaacacagttgaatgtagtaggaccggtccagtcgagcacaagagtttgtgtagattggggcacatggattctcctcccccagctt 406  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50029638 ttggttagcaggaagaacacagttgaatgtagtaggaccggtccagtcgagcacaagagtttgtgtagattggggcacatggattctcctcccccagctt 50029737  T
Q  407 caactatcgacagcccataaagaatgaagagtttcagattcttatatagtgtaaagaagctgatgcagtgtggcgtaaattatatgtttcacgagttttt 506  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50029738 caactttcgacggcccataaagaatgaagagttccagattcttatatagtgtaaagaagctgatgcagtgtggcgtaaattatatgtttcacgagttttt 50029837  T
Q  507 ccgatcctaatagggtataaattgacttttttaaaattatcgatgaaacggaaactgcttaaagttgccactagtatgtgccaacacaaatacattagtc 606  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50029838 ccgaccctaatagggtataaattgacttttttaaaattatcgatgaaacggaaactgcttaaagttgccactagtatgtgccaacacaaatacattagtc 50029937  T
Q  607 aaaacgtgaaatgatctcaaat 628  Q
    ||||||||||||||||||||||    
T  50029938 aaaacgtgaaatgatctcaaat 50029959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 622 - 1053
Target Start/End: Original strand, 50030588 - 50031025
Alignment:
Q  622 ctcaaataacaaactaatcaggcttaaccaattatatagtacagaagatctagcataaataacaaatgccaactgcactttgatttattaaaggtataaa 721  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50030588 ctcaactaacaaactaatcaggcttaaccaattatttagtacagaagatctagcataaataacaaatgccaactgcactttgatttattaaaggtataaa 50030687  T
Q  722 ctagagatatggatgaaagcaaactgcaaacctatatataatgtgagttcacaatgtgagggattgttttagagcctgtttggtttggcttttcagcacc 821  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50030688 ctagagatatggatgaaagcaaactgcaaacctatatataatgtgagttcacaatgtgagggattgttttagagcctgtttggtttggcttttcagcacc 50030787  T
Q  822 aaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaacaattatct 921  Q
    ||||||||||| ||||| |||||||||||||||| ||| |||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  50030788 aaaaagtgattatacaatctttaaaagtgaaaaactgaattttcaatggtgtttggtttgggttttaagaattgattctatcctccaaaaacaattatct 50030887  T
Q  922 ttaaagctacaaatcctaacttctagaatcaattctacattaattttaatattttgatta-taca--ctataatttttcctta-tggcctttatcaa-tc 1016  Q
    ||||||||| |||||||||||||||| |||||| ||||||||| |||  ||||||||||| ||||  |||| ||||| | ||| || |||||||||| ||    
T  50030888 ttaaagctataaatcctaacttctaggatcaatcctacattaaattttctattttgattattacaacctattattttcctttattgccctttatcaattc 50030987  T
Q  1017 tctctctttttgc-ttgtaatttaaattgatgaatcaa 1053  Q
    ||  ||||||||| ||||||||||| ||||||||||||    
T  50030988 tccttctttttgctttgtaatttaatttgatgaatcaa 50031025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 793 - 1049
Target Start/End: Complemental strand, 13510116 - 13509846
Alignment:
Q  793 gagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaa 892  Q
    |||||||||||||||||||||||| || ||| || ||||||||||||||| |||||||||||| ||||||||||||||||||||||||  ||||||||||    
T  13510116 gagcctgtttggtttggcttttcaacatcaagaaatgattctacaaccttcaaaagtgaaaaactgagtttttaatggtgtttggtttagcttttaagaa 13510017  T
Q  893 ttgattctatcctccaaaaacaattatctttaaagctacaaatcctaac---------ttctagaatcaattctacattaattttaatattttgatta-t 982  Q
    ||||||||||||||||||| |||||||| ||||||||| |||||||| |         ||||||||||||||||||||||| |||  ||||||||||| |    
T  13510016 ttgattctatcctccaaaagcaattatccttaaagctataaatcctagcttctagcttttctagaatcaattctacattaaattttctattttgattatt 13509917  T
Q  983 aca--ctataatttttcctta-tggcctttatcaatctctctctttttgc-ttgtaatttaaattgatgaa 1049  Q
    |||  |||| ||||| | ||| || ||||||||||| ||  ||||||||| ||||||||||| ||||||||    
T  13509916 acaacctattattttcctttattgccctttatcaatttccttctttttgctttgtaatttaacttgatgaa 13509846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 792 - 1049
Target Start/End: Complemental strand, 47656065 - 47655793
Alignment:
Q  792 agagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaaga 891  Q
    ||||||||||||||||||||||||| |||||| |||||||| ||||||| | ||||||||  || ||||||||||||| ||||||||||| |||||||||    
T  47656065 agagcctgtttggtttggcttttcaacaccaagaagtgattatacaaccctcaaaagtgactaactgagtttttaatgatgtttggtttggcttttaaga 47655966  T
Q  892 attgattctatcctccaaaaacaattatctttaaagctacaaatcctaac---------ttctagaatcaattctacattaattttaatattttgatta- 981  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||| |         ||||||||||||||||||||||| |||  |||||||| ||     
T  47655965 attgattctatcctccaaaagcaattatccttaaagctacaaatcctagcttctaacttttctagaatcaattctacattaaattttctattttgactat 47655866  T
Q  982 taca--ctataatttttcctta-tggcctttatcaa-tctctctctttttgc-ttgtaatttaaattgatgaa 1049  Q
    ||||  |||| ||||| | ||| || |||||||||| ||||| ||||||||| ||||||||||| ||||||||    
T  47655865 tacaacctattattttcctttattgccctttatcaattctctttctttttgctttgtaatttaatttgatgaa 47655793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 797 - 947
Target Start/End: Original strand, 6706060 - 6706208
Alignment:
Q  797 ctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattga 896  Q
    ||||||||||||||||||||| ||| ||  || ||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  6706060 ctgtttggtttggcttttcagtaccgaa--gtaattctacaatctttaaaagtgaaaaattgaatttttaatggtgtttagtttggcttttaagaattga 6706157  T
Q  897 ttctatcctccaaaaacaattatctttaaagctacaaatcctaacttctag 947  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  6706158 ttctatcctccaaaaacaattatccttaaagctacaaatcctagcttctag 6706208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 792 - 935
Target Start/End: Original strand, 35604735 - 35604878
Alignment:
Q  792 agagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaaga 891  Q
    |||||||||||| |||  |||||||||||||| |||||||||||||||| | |||||||||||| |||||||| ||||||||||| ||||||||||||||    
T  35604735 agagcctgtttgttttaacttttcagcaccaagaagtgattctacaaccctcaaaagtgaaaaactgagttttcaatggtgtttgatttgacttttaaga 35604834  T
Q  892 attgattctatcctccaaaaacaattatctttaaagctacaaat 935  Q
    |||| |||||||||||||||||||||||| || |||||||||||    
T  35604835 attgcttctatcctccaaaaacaattatccttgaagctacaaat 35604878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 793 - 936
Target Start/End: Original strand, 46406343 - 46406486
Alignment:
Q  793 gagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaa 892  Q
    ||||||||||||||  |||||||| || ||| |||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||| ||||||||||    
T  46406343 gagcctgtttggttcagcttttcaccatcaagaagtgattctacaaccttcaaaagtgaaaagttgaattttcaatggtgtttggtttggcttttaagaa 46406442  T
Q  893 ttgattctatcctccaaaaacaattatctttaaagctacaaatc 936  Q
    ||||||||||||||||||| ||||||||  | ||||||||||||    
T  46406443 ttgattctatcctccaaaagcaattatccatgaagctacaaatc 46406486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 877 - 947
Target Start/End: Original strand, 7385231 - 7385301
Alignment:
Q  877 gtttgacttttaagaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaacttctag 947  Q
    |||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| ||||||    
T  7385231 gtttgacttttaagaattaattctatccttcaaaagcaattatctttaaagctacaaatcctaatttctag 7385301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 852 - 982
Target Start/End: Complemental strand, 11051279 - 11051140
Alignment:
Q  852 aaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaactt-------- 943  Q
    ||||||||||||| |||  ||||||||||||||||| | ||||| |||||||||||||||||||||||  || || |||||| |||||||||            
T  11051279 aaaattgagttttcaatcatgtttggtttgacttttcaaaattgcttctatcctccaaaaacaattatggttgaatctacaattcctaacttttgggtaa 11051180  T
Q  944 -ctagaatcaattctacattaattttaatattttgattat 982  Q
     |||||||||||||| |||||| ||| |||||||||||||    
T  11051179 actagaatcaattctccattaaattttatattttgattat 11051140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 831 - 917
Target Start/End: Original strand, 11829037 - 11829123
Alignment:
Q  831 ttctacaac-ctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaacaatt 917  Q
    ||||||||| ||| ||||||||||| ||||||||| |||  ||||||||||| ||||||||||||| ||||||||||||||| |||||    
T  11829037 ttctacaacgcttcaaaagtgaaaa-ttgagttttcaatcatgtttggtttgccttttaagaattgcttctatcctccaaaagcaatt 11829123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 853 - 943
Target Start/End: Complemental strand, 4485299 - 4485209
Alignment:
Q  853 aaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaactt 943  Q
    |||||||||||| |||  ||||||||| ||| ||| ||| ||||||||||||||||||||||||| || ||||| |||||| | |||||||    
T  4485299 aaattgagttttcaatattgtttggttagacattttagagttgattctatcctccaaaaacaattctccttaaaactacaatttctaactt 4485209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 831 - 908
Target Start/End: Original strand, 44740106 - 44740182
Alignment:
Q  831 ttctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctcca 908  Q
    |||||||| | | |||||||||| |||||||||  |||||||||||||||| ||||||||||||| ||||||| ||||    
T  44740106 ttctacaaacctcaaaagtgaaagattgagtttc-aatggtgtttggtttgccttttaagaattgtttctatcttcca 44740182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 851 - 917
Target Start/End: Complemental strand, 46033799 - 46033733
Alignment:
Q  851 aaaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaacaatt 917  Q
    |||||||||||||| |||  |||||| |||||||||| | ||||| ||||||||| |||||||||||    
T  46033799 aaaaattgagttttcaatcatgtttgatttgacttttcaaaattgcttctatccttcaaaaacaatt 46033733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 871 - 917
Target Start/End: Original strand, 27575973 - 27576019
Alignment:
Q  871 tgtttggtttgacttttaagaattgattctatcctccaaaaacaatt 917  Q
    ||||||||||||||||| | ||||| ||||||||||||||| |||||    
T  27575973 tgtttggtttgacttttcataattgcttctatcctccaaaagcaatt 27576019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 1e-71; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 179 - 628
Target Start/End: Complemental strand, 7698805 - 7698359
Alignment:
Q  179 aggtgaagttggaaaagggtttgtgag---tatatactttctcaagccaccaaggctcgcgaattaacgtcgattatgtataaatgagaatattttgtct 275  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| |||||| ||    
T  7698805 aggtgaagttggaaaagggtttgtgagaagtatatactttctcaagccaccaaggctcgcaaattaaagtcgattatgtattaatgagaaaattttgcct 7698706  T
Q  276 cttgtcaattttaccaattagaaaagcaattttggttagcaagaagaacacagttgaatgtagtaggaccggtccagtcgagcacaagagtttgtgtaga 375  Q
    || |||||||||| |||||||||||| |||||| || |||   ||||||||| |||| |||||||||| || ||| || ||||||||||||||||||| |    
T  7698705 ctagtcaattttatcaattagaaaagaaatttt-gtcagcgcaaagaacacaattgattgtagtaggatcgatccggtagagcacaagagtttgtgtaaa 7698607  T
Q  376 ttggggcacatggattctcctcccccagcttcaactatcgacagcccataaagaatgaagagtttcagattcttatatagtgtaaagaagctgatgcagt 475  Q
    |||| | || || ||| ||||| |||| |||||    ||| ||||||| ||| ||||||||||| |||||||||||||| ||||||||||||| || ||     
T  7698606 ttggtgtacttgtattttcctctcccaccttcagagttcggcagcccagaaaaaatgaagagttccagattcttatatattgtaaagaagctggtgtagc 7698507  T
Q  476 gtggcgtaaattatatgtttcacgagtttttccgatcctaatagggtata------aattgacttttttaaaattatcgatgaaacggaaactgcttaaa 569  Q
    ||||| |||||  ||||||| |||| |||||| ||  ||||||||| |||      |||| | |||||   |||||||||||||| | ||| ||||||||    
T  7698506 gtggcttaaat--tatgttttacgaatttttcagactctaataggggatattttttaatttatttttt---aattatcgatgaaaagtaaaatgcttaaa 7698412  T
Q  570 gttgccactagtatgtgccaacacaaatacattagtcaaaacgtgaaatgatctcaaat 628  Q
          || ||| ||| | ||||||||||||| |||||||||||| |||||| ||||||    
T  7698411 ------accagtttgtcctaacacaaatacataagtcaaaacgtggaatgatatcaaat 7698359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 793 - 943
Target Start/End: Original strand, 31905352 - 31905502
Alignment:
Q  793 gagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaa 892  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  31905352 gagcctgtttggtttggcttttcagcaccaagaagtgattctagaaccttcaaaagtgaaaaattgagtttttactggtgtttgttttgacttttaagaa 31905451  T
Q  893 ttgattctatcctccaaaaacaattatctttaaagctacaaatcctaactt 943  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  31905452 ttgattctatcctccaaaagcaattatccttaaagctacaaatcctaactt 31905502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 7699257 - 7699118
Alignment:
Q  8 taaagatttgaagggtaggcggccagaggaaattaaaaataagttgctggtagactttgatccatcaaggtgctttatcaaatatttagaggtaagtaca 107  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7699257 taaagatttgaagggtaggcggcctgaggaacttaaaaataagttgctggtagactttgatccatcaaggtgctttatcaaagatttagaggtaagtaca 7699158  T
Q  108 attaaaat--tttgattttgaacatactggtattgtttcc 145  Q
    ||||||||  |||||||||||||||||| |||||||||||    
T  7699157 attaaaatgatttgattttgaacatactcgtattgtttcc 7699118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 801 - 947
Target Start/End: Complemental strand, 37066727 - 37066581
Alignment:
Q  801 ttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgattct 900  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || |    
T  37066727 ttggtttggcttttcaacaccaagaagtgattctacaacctttaaaagtgaaaaactgagtttttaatggtgtttggtttggcttttaagaattggttat 37066628  T
Q  901 atcctccaaaaacaattatctttaaagctacaaatcctaacttctag 947  Q
    |||||| |||| |||||||| ||||||||||||||||||||||||||    
T  37066627 atcctctaaaagcaattatcattaaagctacaaatcctaacttctag 37066581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 792 - 939
Target Start/End: Complemental strand, 41040313 - 41040166
Alignment:
Q  792 agagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaaga 891  Q
    ||||| |||||| |||||||||||||||| || |||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||    
T  41040313 agagcatgtttgttttggcttttcagcactaagaagtgattctacaaccctcaaaagtgaaaaattgagttttcaatggtgtttggtttggcttttaaga 41040214  T
Q  892 attgattctatcctccaaaaacaattatctttaaagctacaaatccta 939  Q
    |||| |||||||||||||||| ||||||| || |||||||||||||||    
T  41040213 attgcttctatcctccaaaaataattatccttgaagctacaaatccta 41040166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 798 - 1049
Target Start/End: Complemental strand, 41742393 - 41742127
Alignment:
Q  798 tgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgat 897  Q
    ||||||||||| ||| ||||||| || ||||||||||| || ||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  41742393 tgtttggtttgacttatcagcactaacaagtgattctataatcttcaaaagtgaaaaactgagtttttaatggtgtttggtttaacttttaagaattgat 41742294  T
Q  898 tctatcctccaaaaacaattatctttaaagctacaaatcctaac---------ttctagaatcaattctacattaattttaatattttgatt-ataca-- 985  Q
    |||||||||||||| ||||| || ||||||||| ||||||||||         ||||||||||||||||||||||| |||  ||||||||||  ||||      
T  41742293 tctatcctccaaaagcaattgtccttaaagctaaaaatcctaacttttagcttttctagaatcaattctacattaaattttctattttgattgttacaac 41742194  T
Q  986 ctataatttttcctta-tggcctttatcaa-tctctctctttttgc-ttgtaatttaaattgatgaa 1049  Q
    |||| ||||||| ||| || |||||||||| ||||  ||||||||| ||||||||||| ||||||||    
T  41742193 ctattatttttctttattgccctttatcaattctccttctttttgctttgtaatttaatttgatgaa 41742127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 789 - 943
Target Start/End: Complemental strand, 39237076 - 39236922
Alignment:
Q  789 tttagagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgactttta 888  Q
    ||||||||||||||||||  |||||||| |||||| |||||||||||||||| | |||||||||||  ||| |||| |||||||||||||||| ||||||    
T  39237076 tttagagcctgtttggttcagcttttcaccaccaagaagtgattctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttggtttggctttta 39236977  T
Q  889 agaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaactt 943  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||||||    
T  39236976 agaattgattctatcctccaaaaacaattatccatgaagctacaaatcctaactt 39236922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 791 - 939
Target Start/End: Complemental strand, 27739529 - 27739381
Alignment:
Q  791 tagagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaag 890  Q
    ||||||||||||||||  |||||||| |||||| |||||||||||||||| |||||||||||||  ||| |||| |||||||||||||||||||||||||    
T  27739529 tagagcctgtttggttcagcttttcaccaccaagaagtgattctacaacccttaaaagtgaaaagctgaattttcaatggtgtttggtttgacttttaag 27739430  T
Q  891 aattgattctatcctccaaaaacaattatctttaaagctacaaatccta 939  Q
    ||||| ||||||||||||||| ||||||||  | |||||||||||||||    
T  27739429 aattgcttctatcctccaaaagcaattatccgtgaagctacaaatccta 27739381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 791 - 1053
Target Start/End: Original strand, 19356420 - 19356698
Alignment:
Q  791 tagagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaat-tgagtttttaatggtgtttggtttgacttttaa 889  Q
    ||||| || ||||||||||||||||| |||||| |||||||||||||||||| |||| |||||||  |||||| |||||||||||||||||| |||||||    
T  19356420 tagagtctctttggtttggcttttcaacaccaagaagtgattctacaaccttcaaaaatgaaaaaactgagttcttaatggtgtttggtttggcttttaa 19356519  T
Q  890 gaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaac---------ttctagaatcaattctacattaattttaatattttgatt 980  Q
    || |||||||||||||| |||| |||||||| ||||| |||||||||||  |         ||||||||||||||||||||||| |||  |||||| |||    
T  19356520 gagttgattctatcctctaaaagcaattatccttaaaactacaaatccttgcttctaatttttctagaatcaattctacattaaattttctatttttatt 19356619  T
Q  981 a-taca--ctataatttttcctta-tggcctttatcaa-tctctctctttttgc-ttgtaatttaaattgatgaatcaa 1053  Q
    | ||||  |||| ||||||| ||| || |||||||||| ||||  ||||||| | ||||||||||| ||||||||||||    
T  19356620 attacaatctattatttttcattattgccctttatcaattctccttctttttcctttgtaatttaatttgatgaatcaa 19356698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 790 - 943
Target Start/End: Original strand, 33229123 - 33229276
Alignment:
Q  790 ttagagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaa 889  Q
    |||||||||||||||||  |||||||| ||| || | |||||||||||||| | |||||||||||  ||| |||| |||||||||||||||| |||||||    
T  33229123 ttagagcctgtttggttcagcttttcaccactaagacgtgattctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttggtttggcttttaa 33229222  T
Q  890 gaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaactt 943  Q
    |||||||||||||||||||||| ||||||||  | |||||||||||||||||||    
T  33229223 gaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaactt 33229276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 792 - 939
Target Start/End: Complemental strand, 21022809 - 21022662
Alignment:
Q  792 agagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaaga 891  Q
    |||||||||||||||  |||||||| |||||| |||||||||||||||| | |||||||||||  ||| |||| |||||||||||||||| |||||||||    
T  21022809 agagcctgtttggttcagcttttcaccaccaagaagtgattctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttggtttggcttttaaga 21022710  T
Q  892 attgattctatcctccaaaaacaattatctttaaagctacaaatccta 939  Q
    |||||||||||||||| ||| ||||||||  | |||||||||||||||    
T  21022709 attgattctatcctcctaaagcaattatccatgaagctacaaatccta 21022662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 799 - 939
Target Start/End: Complemental strand, 7073445 - 7073305
Alignment:
Q  799 gtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgatt 898  Q
    |||||||||| |||||||| ||||| |||||||||||||||| | |||||||||||| ||| ||||||||||||||||||||| ||||||| ||||| ||    
T  7073445 gtttggtttgacttttcagtaccaagaagtgattctacaaccctcaaaagtgaaaaactgaatttttaatggtgtttggtttggcttttaaaaattgctt 7073346  T
Q  899 ctatcctccaaaaacaattatctttaaagctacaaatccta 939  Q
    ||||   ||||||  ||||||| || |||||||||||||||    
T  7073345 ctatttcccaaaagtaattatccttgaagctacaaatccta 7073305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 793 - 939
Target Start/End: Original strand, 21022007 - 21022150
Alignment:
Q  793 gagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaa 892  Q
    |||||||||| |||  |||||||| ||||||   |||||||||||||| | |||||||||||  ||| |||| |||||||||||||||| ||||||||||    
T  21022007 gagcctgtttagttcagcttttcaccaccaa---gtgattctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttggtttggcttttaagaa 21022103  T
Q  893 ttgattctatcctccaaaaacaattatctttaaagctacaaatccta 939  Q
    ||||||||||||||||||||||||||||  | ||| |||||||||||    
T  21022104 ttgattctatcctccaaaaacaattatccatgaagttacaaatccta 21022150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 831 - 983
Target Start/End: Complemental strand, 8958640 - 8958480
Alignment:
Q  831 ttctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaacaattatctttaaagcta 930  Q
    |||||||| ||| ||||||||||| ||||||||| |||| | ||||||||||||||| ||||||| |||||||||| |||||||||| || |||||||||    
T  8958640 ttctacaaacttcaaaagtgaaaa-ttgagttttcaatgttatttggtttgacttttcagaattgtttctatcctctaaaaacaattctccttaaagcta 8958542  T
Q  931 caaatcctaactt---------ctagaatcaattctacattaattttaatattttgattata 983  Q
    ||| |||||| ||         ||||||||||||||||| ||| ||||| ||||||||||||    
T  8958541 caattcctaatttttggctttcctagaatcaattctacactaaatttaaaattttgattata 8958480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 805 - 939
Target Start/End: Complemental strand, 53830 - 53697
Alignment:
Q  805 tttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcc 904  Q
    ||||||||||||||| ||| |||| ||| ||||| ||| ||||||||||| ||||| |||||| | ||||||||||| ||||| | ||||| ||||||||    
T  53830 tttggcttttcagcatcaagaagtcattttacaaacttgaaaagtgaaaa-ttgagcttttaaagttgtttggtttgccttttcataattgcttctatcc 53732  T
Q  905 tccaaaaacaattatctttaaagctacaaatccta 939  Q
    ||||||| |||||||  || ||||||||| |||||    
T  53731 tccaaaagcaattatggttgaagctacaattccta 53697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 795 - 933
Target Start/End: Complemental strand, 11018602 - 11018465
Alignment:
Q  795 gcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaatt 894  Q
    ||||||||| ||||| ||||||||| ||| |||   |||||||| | | ||||||| ||| |||| |||| |||| |||||||||||  |||| ||||||    
T  11018602 gcctgtttgttttggtttttcagcaacaagaagcacttctacaagcctcaaaagtggaaa-ttgaattttcaatgttgtttggtttggtttttcagaatt 11018504  T
Q  895 gattctatcctccaaaaacaattatctttaaagctacaa 933  Q
    | |||||||||| ||||||||||||| ||||||||||||    
T  11018503 gtttctatcctcaaaaaacaattatccttaaagctacaa 11018465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 853 - 911
Target Start/End: Complemental strand, 32872698 - 32872640
Alignment:
Q  853 aaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaa 911  Q
    |||||||||||| |||| |||||| |||||||||| | ||||| |||||||||||||||    
T  32872698 aaattgagttttcaatgttgtttgatttgactttttaaaattgcttctatcctccaaaa 32872640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 1e-62; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 794 - 1052
Target Start/End: Complemental strand, 35458360 - 35458087
Alignment:
Q  794 agcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaat 893  Q
    |||||||||||||||||||||||  |||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35458360 agcctgtttggtttggcttttcaataccaagttgtgattctacaaccttcaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaat 35458261  T
Q  894 tgattctatcctccaaaaacaattatctttaaagctacaaatcctaactt---------ctagaatcaattctacattaattttaatattttgatta-ta 983  Q
    |||||||||| ||||||| |||||||| ||||| ||||||||||||||||         ||||||||||||||||||||| |||  ||||||||||| ||    
T  35458260 tgattctatcatccaaaagcaattatccttaaaactacaaatcctaacttctagcttttctagaatcaattctacattaaattttctattttgattatta 35458161  T
Q  984 ca--ctataatttttcctta-tggcctttatcaa-tctctctctttttgc-ttgtaatttaaattgatgaatca 1052  Q
    ||  |||| ||||||| ||| || |||||||||| ||||  ||||||||| ||||||||||| |||||||||||    
T  35458160 caacctattatttttctttattgccctttatcaattctccttctttttgctttgtaatttaatttgatgaatca 35458087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 789 - 947
Target Start/End: Original strand, 17480732 - 17480890
Alignment:
Q  789 tttagagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgactttta 888  Q
    ||||||| |||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| ||||||    
T  17480732 tttagagtctgtttggtttggcttttcaacaccaagaagtgattctacaaccttcaaaagtgaaaaactgagtttttaatggtgtttagtttggctttta 17480831  T
Q  889 agaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaacttctag 947  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||    
T  17480832 agaattgattctatccttcaaaagcaattatctttaaagctacaaatcctagcttctag 17480890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 793 - 982
Target Start/End: Complemental strand, 37640937 - 37640739
Alignment:
Q  793 gagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaa 892  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||| | |||| |||||||||||||||| |||||||||||||||| |||| |||||    
T  37640937 gagcctgtttgttttggcttttcagcaccaagaagtgattctacaaccctcaaaaatgaaaaattgagttttcaatggtgtttggtttggctttcaagaa 37640838  T
Q  893 ttgattctatcctccaaaaacaattatctttaaagctacaaatcctaactt---------ctagaatcaattctacattaattttaatattttgattat 982  Q
    ||| ||||||||||||||| |||||||| || |||||||||||| || |||         ||||||||||||||||||||| ||| |||||||||||||    
T  37640837 ttgcttctatcctccaaaagcaattatccttgaagctacaaatcttagcttttggctttcctagaatcaattctacattaaattttatattttgattat 37640739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 790 - 1049
Target Start/End: Complemental strand, 43342455 - 43342182
Alignment:
Q  790 ttagagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaa 889  Q
    ||||||||||||||||||||||||||| || ||| |||||||||||||||||| |||||||||| | |||||||||| ||||||||| ||||  ||||||    
T  43342455 ttagagcctgtttggtttggcttttcaacatcaagaagtgattctacaaccttcaaaagtgaaacaatgagttttta-tggtgtttgatttggtttttaa 43342357  T
Q  890 gaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaac---------ttctagaatcaattctacattaattttaatattttgatt 980  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| ||| |         ||||||||||||||||||||||| |||  ||||||||||    
T  43342356 gaattgattctatcctccaaaagcaattatccttaaagctacaaattctagcttctagcttttctagaatcaattctacattaaattttctattttgatt 43342257  T
Q  981 a-taca--ctataatttttcctta-tggcctttatcaa-tctctctctttttgc-ttgtaatttaaattgatgaa 1049  Q
    | ||||  |||| ||||| | ||| || |||||||||| ||||  ||||||||| ||||||||||| ||||||||    
T  43342256 attacaacctattattttcctttattgccctttatcaattctccttctttttgctttgtaatttaatttgatgaa 43342182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 792 - 982
Target Start/End: Original strand, 7473439 - 7473638
Alignment:
Q  792 agagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaaga 891  Q
    ||||| |||||| ||||||| ||||| |  || |||| ||||||||||| | ||||||||||||||||||||| ||||||||||||||||  ||||||||    
T  7473439 agagcttgtttgttttggctattcagtattaagaagtcattctacaaccctcaaaagtgaaaaattgagttttcaatggtgtttggtttggtttttaaga 7473538  T
Q  892 attgattctatcctccaaaaacaattatctttaaagctacaaatcctaactt---------ctagaatcaattctacattaattttaatattttgattat 982  Q
    |||| |||||||||||||||||||||||| || |||||||||||||||||||         | ||||||||||||||||||| ||| |||||||||||||    
T  7473539 attgcttctatcctccaaaaacaattatccttgaagctacaaatcctaacttttggctttccaagaatcaattctacattaaattttatattttgattat 7473638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 790 - 943
Target Start/End: Original strand, 14033291 - 14033444
Alignment:
Q  790 ttagagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaa 889  Q
    |||||||||||||||||  |||||||| ||| || | |||||||||||||| | |||||||||||  ||| |||| |||||||||||||||| |||||||    
T  14033291 ttagagcctgtttggttcagcttttcaccactaagacgtgattctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttggtttggcttttaa 14033390  T
Q  890 gaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaactt 943  Q
    |||||||||||||||||||||| ||||||||  | |||||||||||||||||||    
T  14033391 gaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaactt 14033444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 792 - 943
Target Start/End: Original strand, 13892673 - 13892824
Alignment:
Q  792 agagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaaga 891  Q
    |||||||||||||||  |||||||| |||||| |||||||||||||| | | |||||||||||  ||| |||| ||||||||||| |||| |||||||||    
T  13892673 agagcctgtttggttcagcttttcaccaccaagaagtgattctacaatcctcaaaagtgaaaagctgaattttcaatggtgtttgatttggcttttaaga 13892772  T
Q  892 attgattctatcctccaaaaacaattatctttaaagctacaaatcctaactt 943  Q
    |||||||||||||||||||| ||||||||  | |||||||||||||||||||    
T  13892773 attgattctatcctccaaaagcaattatccatgaagctacaaatcctaactt 13892824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 792 - 943
Target Start/End: Original strand, 14032798 - 14032949
Alignment:
Q  792 agagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaaga 891  Q
    |||||||||||||||  |||||||| |||||| |||||||||||||| | | |||||||||||  ||| |||| ||||||||||| |||| |||||||||    
T  14032798 agagcctgtttggttcagcttttcaccaccaagaagtgattctacaatcctcaaaagtgaaaagctgaattttcaatggtgtttgatttggcttttaaga 14032897  T
Q  892 attgattctatcctccaaaaacaattatctttaaagctacaaatcctaactt 943  Q
    |||||||||||||||||||| ||||||||  | |||||||||||||||||||    
T  14032898 attgattctatcctccaaaagcaattatccatgaagctacaaatcctaactt 14032949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 853 - 982
Target Start/End: Complemental strand, 3739163 - 3739026
Alignment:
Q  853 aaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaactt--------- 943  Q
    |||||||||||| |||| |||| |||||| ||||| | ||||| ||||||| ||||||| ||||| || |||||||||||| |||||| ||             
T  3739163 aaattgagttttcaatgttgtt-ggtttggcttttcataattgcttctatcatccaaaagcaattttccttaaagctacaattcctaatttttgactttc 3739065  T
Q  944 ctagaatcaattctacattaattttaatattttgattat 982  Q
     |||||||||||||||||||| |||||||||||||||||    
T  3739064 ttagaatcaattctacattaaatttaatattttgattat 3739026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 805 - 943
Target Start/End: Original strand, 37996653 - 37996790
Alignment:
Q  805 tttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcc 904  Q
    |||| |||||||||| ||| |||  ||||||||| | | ||||||| ||| ||||||||| |||  ||||||||||| ||||| | ||||| ||||||||    
T  37996653 tttgacttttcagcaacaagaagcaattctacaaacctcaaaagtggaaa-ttgagttttcaatattgtttggtttggcttttcataattgcttctatcc 37996751  T
Q  905 tccaaaaacaattatctttaaagctacaaatcctaactt 943  Q
    |||||||  ||||  | |||||||||||| |||||||||    
T  37996752 tccaaaagtaattcaccttaaagctacaattcctaactt 37996790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 871 - 939
Target Start/End: Complemental strand, 2443793 - 2443725
Alignment:
Q  871 tgtttggtttgacttttaagaattgattctatcctccaaaaacaattatctttaaagctacaaatccta 939  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||||||| ||  ||||||||||| |||||    
T  2443793 tgtttggtttggcttttcagaattgcttctatcctccaaaaacaattctccataaagctacaattccta 2443725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 2e-61; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 793 - 1049
Target Start/End: Complemental strand, 48254680 - 48254409
Alignment:
Q  793 gagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaa 892  Q
    |||||||||||||||| ||||||| |||||| |||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||    
T  48254680 gagcctgtttggtttgacttttcaacaccaataagtgattctacaaccttcaaaagtgaaaaactgagcttttaatggtgtttggtttgacttttaagaa 48254581  T
Q  893 ttgattctatcctccaaaaacaattatctttaaagctacaaatcctaac---------ttctagaatcaattctacattaattttaatattttgatta-t 982  Q
    |||||| |||||||||||| |||||||| |||||||||||||||||| |         ||||||||||||||||| ||||| |||  ||||||||||| |    
T  48254580 ttgattatatcctccaaaagcaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattctatattaaattttctattttgattatt 48254481  T
Q  983 aca--ctataatttttcctta-tggcctttatcaa-tctctctctttttgc-ttgtaatttaaattgatgaa 1049  Q
    |||  |||| ||||||| ||| || |||||||||| ||||| ||||||||| ||||||||||| ||||||||    
T  48254480 acaacctattatttttctttattgccctttatcaattctctttctttttgctttgtaatttaatttgatgaa 48254409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 793 - 982
Target Start/End: Original strand, 39251398 - 39251596
Alignment:
Q  793 gagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaa 892  Q
    |||||||||| ||||| ||||||| |||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||    
T  39251398 gagcctgtttagtttgacttttcaacaccaagaagtgattctacaacctttaaaagtgaaaaactgaatttttaatggtgtttgatttgacttttaagaa 39251497  T
Q  893 ttgattctatcctccaaaaacaattatctttaaagctacaaatcctaacttc---------tagaatcaattctacattaattttaatattttgattat 982  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||||||||         |||||||||||||||||||| |||  ||||||||||||    
T  39251498 ttgattatatcctccaaaaacaattatccctaaagctacaaatcctaacttctaacttttttagaatcaattctacattaaattttctattttgattat 39251596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 790 - 980
Target Start/End: Original strand, 45150517 - 45150716
Alignment:
Q  790 ttagagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaa 889  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| |||| | |||| |||||||||||||||| |||||||||||||||| |||||||    
T  45150517 ttagagcctgtttgttttggcttttcagcaccaagaagtgattctataaccctcaaaaatgaaaaattgagttttcaatggtgtttggtttggcttttaa 45150616  T
Q  890 gaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaactt---------ctagaatcaattctacattaattttaatattttgatt 980  Q
    |||||| |||||||||||||||||||||||| || ||||||||||||||| |||         ||||||||||||||||||||| ||| |||||||||||    
T  45150617 gaattgtttctatcctccaaaaacaattatccttgaagctacaaatcctagcttttggttttcctagaatcaattctacattaaattttatattttgatt 45150716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 790 - 939
Target Start/End: Original strand, 31813320 - 31813469
Alignment:
Q  790 ttagagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaa 889  Q
    |||||||||||||||||  | |||||| |||||| ||||||||||| |||| | |||||||||||  ||| |||| |||||||||| ||||| |||||||    
T  31813320 ttagagcctgtttggttcagtttttcaccaccaagaagtgattctataaccctcaaaagtgaaaagctgaattttcaatggtgtttagtttggcttttaa 31813419  T
Q  890 gaattgattctatcctccaaaaacaattatctttaaagctacaaatccta 939  Q
    |||||||||||||||||||||| ||||||||  | |||||||||||||||    
T  31813420 gaattgattctatcctccaaaagcaattatccatgaagctacaaatccta 31813469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 798 - 982
Target Start/End: Original strand, 42074320 - 42074512
Alignment:
Q  798 tgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgat 897  Q
    |||||| |||||||||| |||| ||| |||   |||||||| | | ||||||| ||| ||||||||| |||| ||||||||||| ||||| ||||||| |    
T  42074320 tgtttgttttggcttttgagcaacaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgctgtttggtttggcttttcagaattgct 42074418  T
Q  898 tctatcctccaaaaacaattatctttaaagctacaaatcctaactt---------ctagaatcaattctacattaattttaatattttgattat 982  Q
    |||||||||||||||||||| || |||||||||||| ||||| |||         || |||||||||||||||||| |||||||||||||||||    
T  42074419 tctatcctccaaaaacaattctccttaaagctacaattcctagcttttgactttgctcgaatcaattctacattaaatttaatattttgattat 42074512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 794 - 893
Target Start/End: Original strand, 11257748 - 11257847
Alignment:
Q  794 agcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaat 893  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||||   | ||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  11257748 agcctgtttgttttggcttttcagcatcaagaagtgattctacaattatcaaaagtgaaaaattgagttttcaatggtgtttggtttggcttttaagaat 11257847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 831 - 982
Target Start/End: Original strand, 51229688 - 51229847
Alignment:
Q  831 ttctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaacaattatctttaaagcta 930  Q
    |||||||| |||||||| || ||| ||||||||| |||| ||||||||||  ||||| | ||||| |||||||||||||||| |||| || |||||||||    
T  51229688 ttctacaaactttaaaattggaaa-ttgagttttcaatgttgtttggtttagcttttcaaaattgcttctatcctccaaaaataattctccttaaagcta 51229786  T
Q  931 caaatcctaactt---------ctagaatcaattctacattaattttaatattttgattat 982  Q
    ||| |||||||||         ||||||||||||||||||||| |||||||||||||||||    
T  51229787 caattcctaacttttggctttcctagaatcaattctacattaaatttaatattttgattat 51229847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 790 - 982
Target Start/End: Original strand, 28182289 - 28182490
Alignment:
Q  790 ttagagcctgtttggtttggcttttcagcaccaaaaagtgattctacaa-cctttaaaagtgaaaaattgagtttttaatggtgtttggtttgactttta 888  Q
    |||||| ||||||| |||||||||||| || ||| |||   |||||||| |||  ||||||| ||| ||||||||| |||| ||||||||||| |||||     
T  28182289 ttagagtctgtttgttttggcttttcaacaacaagaagcacttctacaaacctcaaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttt 28182387  T
Q  889 agaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaactt---------ctagaatcaattctacattaattttaatattttgat 979  Q
    ||||||| ||||||||||||| | |||||||| ||||||||| || |||||||||         ||| ||||||||||||||||| ||| ||||||||||    
T  28182388 agaattgcttctatcctccaacagcaattatccttaaagctaaaattcctaacttttggctttcctataatcaattctacattaaattttatattttgat 28182487  T
Q  980 tat 982  Q
    |||    
T  28182488 tat 28182490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 797 - 982
Target Start/End: Original strand, 48180996 - 48181189
Alignment:
Q  797 ctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattga 896  Q
    ||||||| ||||||||||||||| ||| |||   |||||||| | | | ||||| ||| ||||||||| |||| | ||||||||||| ||| |||||||     
T  48180996 ctgtttgttttggcttttcagcaacaagaagcacttctacaaacctcagaagtggaaa-ttgagttttcaatgttttttggtttgacattttagaattgc 48181094  T
Q  897 ttctatcctccaaaaacaattatctttaaagctacaaatcctaactt---------ctagaatcaattctacattaattttaatattttgattat 982  Q
    ||||||||||||||| ||||| || ||||| |||||| ||||| |||         ||||||||||||||||||||| ||| |||||||||||||    
T  48181095 ttctatcctccaaaagcaattctccttaaaactacaattcctagcttttggctttcctagaatcaattctacattaaattttatattttgattat 48181189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 798 - 939
Target Start/End: Complemental strand, 33025968 - 33025828
Alignment:
Q  798 tgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgat 897  Q
    |||||| ||||||||||||||| ||||| |   |||||||| | | ||||||| ||| ||||||| | |||| ||||||||||||||||| | ||||| |    
T  33025968 tgtttgttttggcttttcagcaacaaaatgcacttctacaaacctcaaaagtggaaa-ttgagttatcaatgttgtttggtttgacttttcaaaattgct 33025870  T
Q  898 tctatcctccaaaaacaattatctttaaagctacaaatccta 939  Q
    |||||||||||||| ||||| || |||||||||||| |||||    
T  33025869 tctatcctccaaaagcaattctccttaaagctacaattccta 33025828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 798 - 939
Target Start/End: Complemental strand, 53687547 - 53687407
Alignment:
Q  798 tgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgat 897  Q
    ||||||||||||||||||||||  ||||||   |||||||| | | ||||||| ||| ||||||||| |||  ||||||||||||||||| | ||||| |    
T  53687547 tgtttggtttggcttttcagcaataaaaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatattgtttggtttgacttttcataattgct 53687449  T
Q  898 tctatcctccaaaaacaattatctttaaagctacaaatccta 939  Q
    |||||||||||||| ||||| |  |||||||||||| |||||    
T  53687448 tctatcctccaaaagcaattcttgttaaagctacaattccta 53687407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 797 - 917
Target Start/End: Original strand, 51407391 - 51407510
Alignment:
Q  797 ctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattga 896  Q
    ||||||| ||||||||||||||| ||| |||  ||||||||    | ||||||||||| |||||||||||| | ||||||||||| ||||| |||||||     
T  51407391 ctgtttgttttggcttttcagcatcaagaagccattctacatatctgaaaagtgaaaa-ttgagtttttaaagttgtttggtttggcttttcagaattgc 51407489  T
Q  897 ttctatcctccaaaaacaatt 917  Q
    ||||||||||||||| |||||    
T  51407490 ttctatcctccaaaagcaatt 51407510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 853 - 939
Target Start/End: Original strand, 42274500 - 42274586
Alignment:
Q  853 aaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaacaattatctttaaagctacaaatccta 939  Q
    |||||||||||| |||| |||||| |||| ||||| ||||||||||||||||||||||| ||||| || |||||| ||||| |||||    
T  42274500 aaattgagttttgaatgttgtttgatttggctttttagaattgattctatcctccaaaagcaattctccttaaagttacaattccta 42274586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 871 - 945
Target Start/End: Original strand, 52692005 - 52692079
Alignment:
Q  871 tgtttggtttgacttttaagaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaacttct 945  Q
    ||||||||||||||||||| ||| |||| |||||||||||| ||||| |  || ||||||||| |||||||||||    
T  52692005 tgtttggtttgacttttaaaaatagattttatcctccaaaagcaattctagttgaagctacaattcctaacttct 52692079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 891 - 982
Target Start/End: Original strand, 11263711 - 11263811
Alignment:
Q  891 aattgattctatcctccaaaaacaattatctttaaagctacaaatcctaactt---------ctagaatcaattctacattaattttaatattttgatta 981  Q
    ||||| ||||||||||||||| |||||||| || ||||||||||||||| |||         ||||||||||||||| ||||| ||| ||||||||||||    
T  11263711 aattgcttctatcctccaaaagcaattatccttgaagctacaaatcctagcttttggctttcctagaatcaattctagattaaattttatattttgatta 11263810  T
Q  982 t 982  Q
    |    
T  11263811 t 11263811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 119; Significance: 3e-60; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 793 - 935
Target Start/End: Original strand, 37619 - 37761
Alignment:
Q  793 gagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaa 892  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37619 gagcctgtttggtttggcttttcaacaccaagaagtgattctacaaccttcaaaagtgaaaaattgagtttttaatggtgtttggtttggcttttaagaa 37718  T
Q  893 ttgattctatcctccaaaaacaattatctttaaagctacaaat 935  Q
    |||||||||||||||||||||||||||| || |||||||||||    
T  37719 ttgattctatcctccaaaaacaattatcctttaagctacaaat 37761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 1e-59; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 790 - 947
Target Start/End: Original strand, 8416581 - 8416738
Alignment:
Q  790 ttagagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaa 889  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||| || |||||||||||||||| |||||||| ||||||| |||| |||||||    
T  8416581 ttagagcctgtttggtttggcttttcaacaccaagaagtgattctacaactttcaaaagtgaaaaattgaatttttaatcgtgtttgatttggcttttaa 8416680  T
Q  890 gaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaacttctag 947  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  8416681 gaattgattctatcctccaaaagcaattatccttaaagctacaaatcctaacttctag 8416738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 789 - 947
Target Start/End: Complemental strand, 45276583 - 45276425
Alignment:
Q  789 tttagagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgactttta 888  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||| ||| ||||||||||||||| ||||||||||||    
T  45276583 tttagagcctgtttggtttggcttttcagcagcaagaagtgattcaacaaccttcaaaagtgaaaaactgaatttttaatggtgttttgtttgactttta 45276484  T
Q  889 agaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaacttctag 947  Q
    | |||||||| |||||||||||| |||||||| |||||||||||||||||| |||||||    
T  45276483 aaaattgattatatcctccaaaagcaattatccttaaagctacaaatcctagcttctag 45276425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 792 - 1049
Target Start/End: Complemental strand, 22936747 - 22936475
Alignment:
Q  792 agagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaaga 891  Q
    ||||||||||||||||| ||||||| |||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||    
T  22936747 agagcctgtttggtttgacttttcaacaccaagaagtgattctacaaccttcaaaagtgaaaaactgagtttttaatggtgtttagtttcacttttaaga 22936648  T
Q  892 attgattctatcctccaaaaacaattatctttaaagctacaaatcctaac---------ttctagaatcaattctacattaattttaatattttgatta- 981  Q
    ||||||||||||||||||||  ||||||  |||||||||||||||||| |         ||||||||||||||||||||||| |||  ||||| |||||     
T  22936647 attgattctatcctccaaaataaattattcttaaagctacaaatcctagcttatagcttttctagaatcaattctacattaaattttctatttcgattat 22936548  T
Q  982 taca--ctataatttttcctta-tggcctttatcaa-tctctctctttttg-cttgtaatttaaattgatgaa 1049  Q
    ||||  |||| ||||| | ||| ||||||||||||| ||||  ||||||||  ||||||||||| ||||||||    
T  22936547 tacaacctattattttcctttattggcctttatcaattctccttctttttgttttgtaatttaatttgatgaa 22936475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 804 - 982
Target Start/End: Complemental strand, 35802509 - 35802322
Alignment:
Q  804 gtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatc 903  Q
    |||||||||||||| ||||| ||||||||||| |||| | ||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||    
T  35802509 gtttggcttttcagtaccaagaagtgattctagaaccctcaaaagtgaaaaattgagttttcaatggtgtttggtttgacttttaaaaattgcttctatc 35802410  T
Q  904 ctccaaaaacaattatctttaaagctacaaatcctaactt---------ctagaatcaattctacattaattttaatattttgattat 982  Q
    |||||||| |||||||| || |||||||| |||||| |||         ||||||||||||||||||||| ||| |||||||||||||    
T  35802409 ctccaaaagcaattatccttgaagctacatatcctagcttttggctttcctagaatcaattctacattaaattttatattttgattat 35802322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 798 - 933
Target Start/End: Complemental strand, 36821797 - 36821663
Alignment:
Q  798 tgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgat 897  Q
    |||||| ||||||||||||||| ||| ||    |||||||| | | ||||||||||| ||||||||| |||| ||||||||||| ||||| ||||||| |    
T  36821797 tgtttgttttggcttttcagcaacaagaaacacttctacaaacctcaaaagtgaaaa-ttgagttttcaatgttgtttggtttggcttttcagaattgct 36821699  T
Q  898 tctatcctccaaaaacaattatctttaaagctacaa 933  Q
    |||||||||||||| |||||||| |||||| |||||    
T  36821698 tctatcctccaaaagcaattatccttaaagttacaa 36821663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 831 - 940
Target Start/End: Original strand, 33165751 - 33165860
Alignment:
Q  831 ttctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaacaattatctttaaagcta 930  Q
    |||||||| | | ||||||||||||||||||||||||  |||||||||||| ||||||||||||| |||||||||| ||||  |||| || |||||||||    
T  33165751 ttctacaaacctcaaaagtgaaaaattgagtttttaacagtgtttggtttggcttttaagaattgtttctatcctctaaaagtaattctccttaaagcta 33165850  T
Q  931 caaatcctaa 940  Q
     || ||||||    
T  33165851 taattcctaa 33165860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 788 - 909
Target Start/End: Original strand, 44238769 - 44238889
Alignment:
Q  788 ttttagagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgactttt 887  Q
    ||||||||||| |||| ||  |||||||| |||||| |||||||||||||||| | |||||||||||  ||| |||| |||||||||| ||||  |||||    
T  44238769 ttttagagcctatttg-ttcagcttttcaccaccaagaagtgattctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttagtttagctttt 44238867  T
Q  888 aagaattgattctatcctccaa 909  Q
    ||||||||||| ||||||||||    
T  44238868 aagaattgattatatcctccaa 44238889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 793 - 982
Target Start/End: Complemental strand, 35164551 - 35164359
Alignment:
Q  793 gagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaa 892  Q
    ||||||||||| ||||||||||||||| ||| |||   |||||||| | | |||||||  ||||||| |||| |||| ||||||||||| ||||| |       
T  35164551 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtg-gaaattgaattttcaatgttgtttggtttggcttttca--- 35164456  T
Q  893 ttgattctatcctccaaaaacaattatctttaaagctacaaatccta-------actt--ctagaatcaattctacattaattttaatattttgattat 982  Q
      | ||||||||||||||| ||||| || || ||||||||| |||||       ||||  || |||||||||||||||||| ||||||||||| |||||    
T  35164455 --gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattat 35164359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 856 - 943
Target Start/End: Original strand, 924086 - 924173
Alignment:
Q  856 ttgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaactt 943  Q
    ||||||||| |||  ||||||||||||||||| | ||||| |||||| ||||||||  |||| |  |||||||||||| |||||||||    
T  924086 ttgagttttcaatcatgtttggtttgacttttcaaaattgcttctatactccaaaagtaattctagttaaagctacaattcctaactt 924173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 1e-59; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 789 - 946
Target Start/End: Original strand, 365509 - 365666
Alignment:
Q  789 tttagagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgactttta 888  Q
    |||||||| ||||||||||||||||| ||||| || || ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  365509 tttagagcatgtttggtttggctttttagcactaagaaatgattctacaatcttcaaaagtgaaaaattgagtttttaatggtgtttggtttgactttta 365608  T
Q  889 agaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaacttcta 946  Q
    ||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  365609 agaattgattctatcatccaaaagcaattatccttaaagctacaaatcctaacttcta 365666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 793 - 939
Target Start/End: Complemental strand, 21517533 - 21517387
Alignment:
Q  793 gagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaa 892  Q
    ||||||||||||||  |||||||| |||||| |||||||||||||||| | ||||||||||| |||| |||| |||||||||||||||||||||||||||    
T  21517533 gagcctgtttggttcagcttttcaccaccaagaagtgattctacaaccctcaaaagtgaaaagttgaattttcaatggtgtttggtttgacttttaagaa 21517434  T
Q  893 ttgattctatcctccaaaaacaattatctttaaagctacaaatccta 939  Q
    ||||||||||||||||||| ||||||||  | |||||||||||||||    
T  21517433 ttgattctatcctccaaaagcaattatccatgaagctacaaatccta 21517387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 822 - 947
Target Start/End: Original strand, 10683120 - 10683243
Alignment:
Q  822 aaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaacaattatct 921  Q
    |||| |||||||||||||||| ||||||||||   ||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||  |||||||     
T  10683120 aaaatgtgattctacaaccttcaaaagtgaaac--tgaatttttaatggtgtttggtttggcttttaagaattgattctatcctctaaaattaattatcc 10683217  T
Q  922 ttaaagctacaaatcctaacttctag 947  Q
    ||||||||||||||||||||||||||    
T  10683218 ttaaagctacaaatcctaacttctag 10683243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 871 - 943
Target Start/End: Complemental strand, 31746287 - 31746215
Alignment:
Q  871 tgtttggtttgacttttaagaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaactt 943  Q
    ||||||||||||||||| | ||||| ||||||||||||||| ||||| ||  || |||||||| |||||||||    
T  31746287 tgtttggtttgacttttcaaaattgcttctatcctccaaaagcaattctccatatagctacaattcctaactt 31746215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 5e-59; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 787 - 947
Target Start/End: Complemental strand, 28964050 - 28963890
Alignment:
Q  787 gttttagagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttt 886  Q
    |||| ||||||||||||||||| ||||||| |||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||    
T  28964050 gtttaagagcctgtttggtttgacttttcaacaccaataagtgattctacaacattcaaaagtgaaaaactgagtttttaatggtgtttggtttgacttt 28963951  T
Q  887 taagaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaacttctag 947  Q
    |||||||||||| |||||||||||| |||||||  ||||||||||||||||||||||||||    
T  28963950 taagaattgattatatcctccaaaagcaattattcttaaagctacaaatcctaacttctag 28963890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 792 - 939
Target Start/End: Original strand, 38767712 - 38767859
Alignment:
Q  792 agagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaaga 891  Q
    |||||||||||| ||| ||||||||||||||| |||||||| || |||| | |||||||||||||| |||||| ||||||||||||||||||||||||||    
T  38767712 agagcctgtttgtttttgcttttcagcaccaagaagtgattttagaaccctcaaaagtgaaaaattaagttttcaatggtgtttggtttgacttttaaga 38767811  T
Q  892 attgattctatcctccaaaaacaattatctttaaagctacaaatccta 939  Q
    |||| ||||||||||||||| |||||||| || |||||||||| ||||    
T  38767812 attgcttctatcctccaaaagcaattatccttgaagctacaaagccta 38767859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 793 - 939
Target Start/End: Complemental strand, 22606536 - 22606390
Alignment:
Q  793 gagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaa 892  Q
    ||||||| ||| ||||||||||||||||||| |||||||||||||||| | ||||| |||||||||| |||| ||||||||||||||| |||||||||||    
T  22606536 gagcctgattgttttggcttttcagcaccaagaagtgattctacaaccctcaaaagagaaaaattgaattttcaatggtgtttggtttaacttttaagaa 22606437  T
Q  893 ttgattctatcctccaaaaacaattatctttaaagctacaaatccta 939  Q
    ||| ||||||||||||||| |||||||   | |||||||||||||||    
T  22606436 ttgcttctatcctccaaaagcaattattcgtgaagctacaaatccta 22606390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 790 - 939
Target Start/End: Complemental strand, 52058431 - 52058282
Alignment:
Q  790 ttagagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaa 889  Q
    |||||||||||||  |||| ||||||||||||||||| |||||||||||   | |||||| ||||| ||| |||| ||||||||||||||||||||||||    
T  52058431 ttagagcctgtttattttgacttttcagcaccaaaaaatgattctacaattctcaaaagtaaaaaactgaattttcaatggtgtttggtttgacttttaa 52058332  T
Q  890 gaattgattctatcctccaaaaacaattatctttaaagctacaaatccta 939  Q
    |||||| ||||||||||||||| |||||||| || |||||||||||||||    
T  52058331 gaattgcttctatcctccaaaagcaattatccttgaagctacaaatccta 52058282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 792 - 982
Target Start/End: Complemental strand, 30418575 - 30418375
Alignment:
Q  792 agagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttgg-tttgacttttaag 890  Q
    ||||| |||||| |||  ||||||| || ||| ||||||||||| || ||| |||||| ||||||||||||||||||||||||||| |||| |||||||     
T  30418575 agagcatgtttgattttccttttcaacatcaagaagtgattctataatcttcaaaagtaaaaaattgagtttttaatggtgtttgggtttggcttttaaa 30418476  T
Q  891 aattgattctatcctccaaaaacaattatctttaaagctacaaatcctaactt---------ctagaatcaattctacattaattttaatattttgatta 981  Q
    ||||||||||||||||||||| |||||||| || |||||||||||||||||||         ||||||||||||||||||||| |||  |||||||||||    
T  30418475 aattgattctatcctccaaaagcaattatccttcaagctacaaatcctaacttttagctttcctagaatcaattctacattaaattttctattttgatta 30418376  T
Q  982 t 982  Q
    |    
T  30418375 t 30418375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 797 - 926
Target Start/End: Complemental strand, 29386203 - 29386075
Alignment:
Q  797 ctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattga 896  Q
    |||||||||||||||||||| ||| || |||||||||||||||||| ||||||| |||| ||||||||| ||||||||| ||||| ||||||| ||||||    
T  29386203 ctgtttggtttggcttttcaacacaaagaagtgattctacaaccttcaaaagtg-aaaactgagttttttatggtgtttagtttggcttttaacaattga 29386105  T
Q  897 ttctatcctccaaaaacaattatctttaaa 926  Q
    || |||| || |||| ||||||||||||||    
T  29386104 ttttatcttcgaaaatcaattatctttaaa 29386075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 798 - 982
Target Start/End: Complemental strand, 53663805 - 53663613
Alignment:
Q  798 tgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgat 897  Q
    |||||| |||||||||| |||| ||| |||   |||||||| ||| ||||||| ||| |||||||||||| |  ||||| |||| ||||| |||||||||    
T  53663805 tgtttgttttggcttttgagcaacaagaagcacttctacaaacttcaaaagtggaaa-ttgagtttttaacgccgtttgatttggctttttagaattgat 53663707  T
Q  898 tctatcctccaaaaacaattatctttaaagctacaaatcctaactt---------ctagaatcaattctacattaattttaatattttgattat 982  Q
    |||||||||||||| |||||||| |||||||||||| |||||||||         ||| ||||||||||||||||| ||| |||||||||||||    
T  53663706 tctatcctccaaaagcaattatccttaaagctacaattcctaacttttggctttcctataatcaattctacattaaattttatattttgattat 53663613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 828 - 936
Target Start/End: Original strand, 48406933 - 48407041
Alignment:
Q  828 tgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaacaattatctttaaag 927  Q
    ||||||||||||| | |||| |||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||  |||||||| || |||    
T  48406933 tgattctacaaccctcaaaaatgaaaaattgagttttcaatggtgtttgatttgacttttaagaattgcttctatcctccaaatgcaattatccttgaag 48407032  T
Q  928 ctacaaatc 936  Q
    |||| ||||    
T  48407033 ctaccaatc 48407041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 842 - 982
Target Start/End: Complemental strand, 53404238 - 53404089
Alignment:
Q  842 ttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaac 941  Q
    |||||||| |||||||||||||| |||| ||||||||||| |||||||| || | ||||||||||||||| ||||| || |||||||||||| ||||| |    
T  53404238 ttaaaagtaaaaaattgagttttcaatgttgtttggtttggcttttaagcatagcttctatcctccaaaagcaattctccttaaagctacaattcctagc 53404139  T
Q  942 tt---------ctagaatcaattctacattaattttaatattttgattat 982  Q
    ||         |||||||||||| |||||||| ||| |||||||||||||    
T  53404138 ttttggttttcctagaatcaattttacattaaattttatattttgattat 53404089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 831 - 982
Target Start/End: Original strand, 49723744 - 49723903
Alignment:
Q  831 ttctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaacaattatctttaaagcta 930  Q
    |||||||| | | ||||||||||||||||||||  |||||||||||||||| ||||||||||||| ||||||||||| |||| |||| || |||||||||    
T  49723744 ttctacaaacctcaaaagtgaaaaattgagtttccaatggtgtttggtttggcttttaagaattgtttctatcctcc-aaaagaattctcgttaaagcta 49723842  T
Q  931 caaatccta---------acttctagaatcaattctacattaattttaatattttgattat 982  Q
    ||| || ||         | ||||||||||||||||| ||||| ||| |||||||||||||    
T  49723843 caattcttagcttttggtatttctagaatcaattctatattaaattttatattttgattat 49723903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 871 - 945
Target Start/End: Complemental strand, 51834346 - 51834272
Alignment:
Q  871 tgtttggtttgacttttaagaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaacttct 945  Q
    ||||||||||||||||| ||||||| ||||||||||||||| ||||| ||  ||||||||||| |||||||||||    
T  51834346 tgtttggtttgacttttcagaattgcttctatcctccaaaagcaattctccataaagctacaattcctaacttct 51834272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 853 - 982
Target Start/End: Original strand, 45105789 - 45105926
Alignment:
Q  853 aaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaac--------ttc 944  Q
    |||||||||||| |||| ||||||||||| ||||| ||||||| || ||||||||| || ||||| |  ||||||||| || || || |        |||    
T  45105789 aaattgagttttcaatgttgtttggtttggcttttcagaattgcttatatcctccagaagcaattcttcttaaagctaaaattcatagcttttgcttttc 45105888  T
Q  945 tagaatcaattctacattaattttaatattttgattat 982  Q
    |||||||||||||||||| | |||||||||||||||||    
T  45105889 tagaatcaattctacattcaatttaatattttgattat 45105926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 852 - 917
Target Start/End: Original strand, 26457092 - 26457157
Alignment:
Q  852 aaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaacaatt 917  Q
    |||||||||||||||| | |||| | |||||||||| ||||||| || ||||||||||||||||||    
T  26457092 aaaattgagtttttaaagttgttagatttgacttttcagaattgcttttatcctccaaaaacaatt 26457157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 948 - 1031
Target Start/End: Original strand, 48407038 - 48407126
Alignment:
Q  948 aatcaattctacattaattttaatattttgatta-taca--ctataatttttcctta-tggcctttatcaa-tctctctctttttgctt 1031  Q
    ||||||||||||||||| ||| |||||||||||| ||||  |||| ||||||| ||| || |||||||||| ||||| |||||||||||    
T  48407038 aatcaattctacattaaattttatattttgattattacaatctattatttttctttattgccctttatcaattctctttctttttgctt 48407126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 7e-58; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 795 - 1049
Target Start/End: Complemental strand, 25472939 - 25472670
Alignment:
Q  795 gcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaatt 894  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  25472939 gcctgtttggtttggcttttcaacaccaagaagtgattctacaaccttcaaaaatgacaaattgagtttttaatggtgtttggtttgacttttaagaatt 25472840  T
Q  895 gattctatcctccaaaaacaattatctttaaagctacaaatcctaac---------ttctagaatcaattctacattaattttaatattttgatta-tac 984  Q
    ||||||||||||||||| |||||||| || |||||||||||| || |         ||||||||||||||||||||||| |||  ||||||||||| |||    
T  25472839 gattctatcctccaaaagcaattatccttgaagctacaaatcatagcttctacattttctagaatcaattctacattaaattttctattttgattattac 25472740  T
Q  985 a--ctataatttttcctta-tggcctttatcaa-tctctctctttttgc-ttgtaatttaaattgatgaa 1049  Q
    |  |||| ||||| | ||| || |||||||||| ||||  ||||||||| ||||||||||| ||||||||    
T  25472739 aacctattattttcctttattgccctttatcaattctccttctttttgctttgtaatttaatttgatgaa 25472670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 797 - 947
Target Start/End: Complemental strand, 30140001 - 30139851
Alignment:
Q  797 ctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattga 896  Q
    ||||||||||| | |||||| |||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30140001 ctgtttggtttagtttttcaacaccaagaagtgattctacaatctttaaaagtgaaaatttgagtttttaatggtgtttggtttgacttttaagaattga 30139902  T
Q  897 ttctatcctccaaaaacaattatctttaaagctacaaatcctaacttctag 947  Q
    |||||| ||||||||||||||||| |||||||||  |||| || |||||||    
T  30139901 ttctattctccaaaaacaattatccttaaagctatgaatcttagcttctag 30139851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 793 - 947
Target Start/End: Original strand, 37371001 - 37371155
Alignment:
Q  793 gagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaa 892  Q
    |||||||||||||||| ||||||| || ||| ||   |||||||||| || |||||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  37371001 gagcctgtttggtttgacttttcaacatcaagaaagaattctacaactttcaaaagtgaaaaattaagtttttaatgatgtttggtttggcttttaagaa 37371100  T
Q  893 ttgattctatcctccaaaaacaattatctttaaagctacaaatcctaacttctag 947  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37371101 ttggttctatcctccaaaagcaattatctttaaagctacaaatcctaacttctag 37371155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 797 - 939
Target Start/End: Original strand, 12909155 - 12909297
Alignment:
Q  797 ctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattga 896  Q
    ||||||||||  |||||||| |||||| |||||||||||||||| | |||||||||||  ||| |||| |||||||||||||||||||||||||||||||    
T  12909155 ctgtttggttcagcttttcaccaccaagaagtgattctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttggtttgacttttaagaattga 12909254  T
Q  897 ttctatcctccaaaaacaattatctttaaagctacaaatccta 939  Q
    ||||||||||||||| ||||||||  | |||||||||||||||    
T  12909255 ttctatcctccaaaagcaattatccatgaagctacaaatccta 12909297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 798 - 982
Target Start/End: Original strand, 25970360 - 25970553
Alignment:
Q  798 tgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgat 897  Q
    |||||| ||||||||||||||| ||  ||    |||||||| | | |||||||||||||||| | || |||||||||||||||| ||||||||||||| |    
T  25970360 tgtttgttttggcttttcagcatcatgaatcacttctacaaacatcaaaagtgaaaaattgaatattcaatggtgtttggtttggcttttaagaattgct 25970459  T
Q  898 tctatcctccaaaaacaattatctttaaagctacaaatcctaactt---------ctagaatcaattctacattaattttaatattttgattat 982  Q
    ||||||||||||||  |||| ||||||||||||||| ||||| |||          |||||||||||||||||||| ||| |||||||||||||    
T  25970460 tctatcctccaaaagtaattctctttaaagctacaattcctagcttttggctttcttagaatcaattctacattaaattttatattttgattat 25970553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 798 - 982
Target Start/End: Original strand, 14999797 - 14999988
Alignment:
Q  798 tgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgat 897  Q
    |||||| |||||||||| |||| ||| |||   |||||||||||  ||||||| ||| ||||||||| |||| ||||||||||| ||||| |||||||||    
T  14999797 tgtttgttttggcttttgagcaacaagaagcacttctacaacctc-aaaagtggaaa-ttgagttttcaatgttgtttggtttggctttttagaattgat 14999894  T
Q  898 tctatcctccaaaaacaattatctttaaagctacaaatcctaactt---------ctagaatcaattctacattaattttaatattttgattat 982  Q
    ||||||||||||||  |||| || |||||||||||| |||||| ||         ||||||||||||||||||||| ||| |||||||||||||    
T  14999895 tctatcctccaaaagtaattctccttaaagctacaattcctaatttttggctttcctagaatcaattctacattaaattttatattttgattat 14999988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 795 - 943
Target Start/End: Original strand, 26826306 - 26826454
Alignment:
Q  795 gcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaatt 894  Q
    |||| |||| |||||||||||||||  |||||    |||||||| | | ||||||| ||||||||||||| |||||| ||||||||| ||||||||||||    
T  26826306 gcctatttgttttggcttttcagcataaaaaatcacttctacaaacctcaaaagtggaaaattgagttttcaatggtatttggtttggcttttaagaatt 26826405  T
Q  895 gattctatcctccaaaaacaattatctttaaagctacaaatcctaactt 943  Q
      |||||||||||||||  |||| || |||||| ||||| |||||||||    
T  26826406 acttctatcctccaaaagtaattctccttaaaggtacaattcctaactt 26826454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 791 - 982
Target Start/End: Original strand, 30825111 - 30825310
Alignment:
Q  791 tagagcctgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaag 890  Q
    |||||||| |||| |||||||||| |||| ||| ||    |||||||| | | ||||||| ||| ||||||||| |||| ||||||||||| ||||| ||    
T  30825111 tagagcctctttgttttggctttttagcagcaagaaacacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttgcctttttag 30825209  T
Q  891 aattgattctatcctccaaaaacaattatctttaaagctacaaatcctaactt---------ctagaatcaattctacattaattttaatattttgatta 981  Q
    ||||| ||||||||||||||||||||| || |||||| ||||| ||||| |||         | ||||||||||||||||||| ||||||||||| ||||    
T  30825210 aattgcttctatcctccaaaaacaattctccttaaagttacaattcctagcttttggctttccaagaatcaattctacattaaatttaatattttaatta 30825309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 798 - 982
Target Start/End: Complemental strand, 43664984 - 43664792
Alignment:
Q  798 tgtttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgat 897  Q
    |||||| |||||||||||| || ||| || |  ||||| || | | ||||||||||| |||| |||| |||| |||||| |||  ||||| |||||| ||    
T  43664984 tgtttgttttggcttttcaacaacaagaattacttctataaacctcaaaagtgaaaa-ttgaattttcaatgttgtttgttttagcttttcagaattcat 43664886  T
Q  898 tctatcctccaaaaacaattatctttaaagctacaaatcctaac---------ttctagaatcaattctacattaattttaatattttgattat 982  Q
    |||||||||||||| ||||| |  |||||||||||| | |||||         | ||||||||||||||||||||| ||| |||||||||||||    
T  43664885 tctatcctccaaaagcaatttttcttaaagctacaatttctaacctttgactttcctagaatcaattctacattaaattttatattttgattat 43664792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 852 - 911
Target Start/End: Original strand, 39857058 - 39857117
Alignment:
Q  852 aaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaa 911  Q
    ||||||||||||| |||  ||||||||||||||||| ||||||| |||||||||||||||    
T  39857058 aaaattgagttttcaatcatgtttggtttgacttttcagaattgcttctatcctccaaaa 39857117  T

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Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 871 - 945
Target Start/End: Original strand, 41064609 - 41064683
Alignment:
Q  871 tgtttggtttgacttttaagaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaacttct 945  Q
    ||||||||||| ||||| | ||||| ||||||||||||||||||||| ||  ||||||||||| ||||| |||||    
T  41064609 tgtttggtttgccttttcataattgcttctatcctccaaaaacaattctccataaagctacaattcctagcttct 41064683  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 944 - 982
Target Start/End: Complemental strand, 26827779 - 26827741
Alignment:
Q  944 ctagaatcaattctacattaattttaatattttgattat 982  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  26827779 ctagaatcaattctacattaaattttatattttgattat 26827741  T

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Target: scaffold0808 (Bit Score: 95; Significance: 6e-46; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 801 - 947
Target Start/End: Original strand, 4021 - 4166
Alignment:
Q  801 ttggtttggcttttcagcaccaaaaagtgattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgattct 900  Q
    ||||||||||||||||||||||| || ||||||||||||||| |||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||    
T  4021 ttggtttggcttttcagcaccaagaa-tgattctacaaccttcaaaagtgaaaaactgaatttttaatggtgtttagtttggcttttaagaattgattct 4119  T
Q  901 atcctccaaaaacaattatctttaaagctacaaatcctaacttctag 947  Q
    |||||| |||| |||||||| ||||||||| |||||||| |||||||    
T  4120 atcctcgaaaagcaattatcattaaagctaaaaatcctagcttctag 4166  T

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Target: scaffold0097 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 829 - 982
Target Start/End: Complemental strand, 33202 - 33040
Alignment:
Q  829 gattctacaacctttaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaa-caattatctttaaag 927  Q
    |||||||||| | | |||| |||||||||||||||| |||| | ||| ||||||||||||| ||||| |||||| ||||||||| |||||||| || |||    
T  33202 gattctacaatcctcaaaaatgaaaaattgagttttcaatgatatttagtttgacttttaaaaattgcttctattctccaaaaagcaattatcctt-aag 33104  T
Q  928 ctacaaatcctaac---------ttctagaatcaattctacattaattttaatattttgattat 982  Q
    |||||||| |||||         ||||||||||||||||| ||||| ||| |||||||||||||    
T  33103 ctacaaattctaacttttggtttttctagaatcaattctaaattaaattttatattttgattat 33040  T

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Target: scaffold0069 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 853 - 940
Target Start/End: Original strand, 16797 - 16884
Alignment:
Q  853 aaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaacaattatctttaaagctacaaatcctaa 940  Q
    |||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| |  |||||||||||| ||||||    
T  16797 aaattgagttttcaatgttgtttggtttggctttttagaattgattctatcctccaaaagcaattctaattaaagctacaattcctaa 16884  T

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Target: scaffold0006 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 853 - 943
Target Start/End: Original strand, 91516 - 91608
Alignment:
Q  853 aaattgagtttttaatggtgtttggtttgacttttaagaattgattctatcctccaaaaacaattatct--ttaaagctacaaatcctaactt 943  Q
    |||||||||||| ||||  |||||||||| ||||| ||||||||||||||||||||||| ||||  |||  |||||||||||| |||||||||    
T  91516 aaattgagttttcaatgtagtttggtttggctttttagaattgattctatcctccaaaagcaatattctacttaaagctacaattcctaactt 91608  T

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