View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0447-Insertion-11 (Length: 75)

Name: NF0447-Insertion-11
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0447-Insertion-11
NF0447-Insertion-11
[»] chr4 (3 HSPs)
chr4 (7-75)||(48961455-48961523)
chr4 (7-75)||(48958306-48958374)
chr4 (7-74)||(48965488-48965555)
[»] chr2 (3 HSPs)
chr2 (7-75)||(13454993-13455061)
chr2 (10-75)||(13448525-13448590)
chr2 (7-75)||(13440359-13440427)
[»] chr6 (1 HSPs)
chr6 (7-65)||(12483423-12483481)
[»] chr8 (1 HSPs)
chr8 (10-65)||(12641440-12641495)
[»] chr7 (1 HSPs)
chr7 (7-65)||(3417489-3417547)
[»] chr5 (2 HSPs)
chr5 (7-75)||(12540844-12540912)
chr5 (7-75)||(28385493-28385561)


Alignment Details
Target: chr4 (Bit Score: 65; Significance: 3e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-29
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 48961455 - 48961523
Alignment:
Q  7 atgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccct 75  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48961455 atgtttctctcttcaaatcctttcggcaaccacttgtctttctcctcttcgctctcatccactttccct 48961523  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 48958306 - 48958374
Alignment:
Q  7 atgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccct 75  Q
    |||||||||||||| |||||||||| |||||||||  ||||||||||||| ||||| ||  ||||||||    
T  48958306 atgtttctctcttcgaatcctttcggcaaccactttcctttctcctcttcactctcgtcttctttccct 48958374  T

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Target: chr4; HSP #3
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 48965488 - 48965555
Alignment:
Q  7 atgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccc 74  Q
    |||||||||||||| ||||| || |  |||||||| |  ||||||||||| ||||||||| |||||||    
T  48965488 atgtttctctcttcgaatccctttggtaaccacttttgcttctcctcttcactctcatcctctttccc 48965555  T

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Target: chr2 (Bit Score: 41; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 13454993 - 13455061
Alignment:
Q  7 atgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccct 75  Q
    |||||| ||||||||||||| |||| ||||||||| | |||||||||||||||||||||  ||||||||    
T  13454993 atgtttttctcttcaaatcccttcggcaaccacttttgtttctcctcttcgctctcatcttctttccct 13455061  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 13448525 - 13448590
Alignment:
Q  10 tttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccct 75  Q
    ||||||||||||||||| ||||  |||||||| |||||||| ||||||||||||||  ||||||||    
T  13448525 tttctctcttcaaatcccttcggtaaccacttttctttctcttcttcgctctcatcttctttccct 13448590  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 13440359 - 13440427
Alignment:
Q  7 atgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccct 75  Q
    |||||||||||||| ||||| || | ||||||||| |||||||| || || ||||||||  ||||||||    
T  13440359 atgtttctctcttcgaatccctttggcaaccacttttctttctcttcctcactctcatcttctttccct 13440427  T

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Target: chr6 (Bit Score: 39; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 12483481 - 12483423
Alignment:
Q  7 atgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatc 65  Q
    ||||||||||| |||||||| |||| ||||||||| ||||||||||| |||||||||||    
T  12483481 atgtttctctcctcaaatcccttcggcaaccacttttctttctcctcatcgctctcatc 12483423  T

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Target: chr8 (Bit Score: 36; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 12641495 - 12641440
Alignment:
Q  10 tttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatc 65  Q
    ||||||||||| |||||||| | ||||||||| |||||||||||||| ||||||||    
T  12641495 tttctctcttcgaatcctttaggcaaccacttttctttctcctcttcactctcatc 12641440  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 3417547 - 3417489
Alignment:
Q  7 atgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatc 65  Q
    ||||||||||| |||||||| |||| ||||||||| |||||||| |||||| |||||||    
T  3417547 atgtttctctcctcaaatcccttcggcaaccacttttctttctcttcttcgttctcatc 3417489  T

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Target: chr5 (Bit Score: 29; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 12540844 - 12540912
Alignment:
Q  7 atgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccct 75  Q
    ||||||||||| |||||||| |||| || |||||| |||||||| |||||  |||||||  ||||||||    
T  12540844 atgtttctctcctcaaatcccttcggcatccacttttctttctcttcttcagtctcatcttctttccct 12540912  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 28385493 - 28385561
Alignment:
Q  7 atgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccct 75  Q
    ||||||||||| |||||||| || | || |||||| |||||||| |||||| |||||||  ||||||||    
T  28385493 atgtttctctcctcaaatccctttggcagccacttttctttctcttcttcgatctcatcttctttccct 28385561  T

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