View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447-Insertion-12 (Length: 1015)
Name: NF0447-Insertion-12
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447-Insertion-12 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 8 - 513
Target Start/End: Original strand, 33446845 - 33447351
Alignment:
| Q |
8 |
taaatcagctgggctttcacattgttggctatggttgcacaacttgtatcgggaattctggagaacttgataactcggtggcatctgcaatttcagaaaa |
107 |
Q |
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| T |
33446845 |
taaatcagttgggctttcacactgttggctatggttgcacaacctgtattggaaattccggagaactcgataactcggtggcatctgcaatttcagaaaa |
33446944 |
T |
|
| Q |
108 |
tggtatacattaagataatgcagatatttcattttcattttataacttaataaccacgaccctgctttaatcttcttgttccaacctttgcagacattat |
207 |
Q |
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| T |
33446945 |
tggtacacattaagataatacagatatttctttttcattttatatcttaataaccacgaccctgctttaaacttcttgttccaacctttgcagacattat |
33447044 |
T |
|
| Q |
208 |
tgctgcttctgttctttctggaaaccgaaattttgaaggtcgtgttcatccgttaacaagagcaaactaccttgcttctcctccattagttgttgcctat |
307 |
Q |
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| T |
33447045 |
tgctgcttctgttctttctggaaaccgaaattttgaaggtcgtgttcatccgttaacaagagcaaactaccttgcttctcctccattagttgttgcctat |
33447144 |
T |
|
| Q |
308 |
gcccttttcggcacggtttgtctatgttcttatgctttcatgatgtaacagttagcttttgaatgtaatttaaaaacatcttgaatgagtaagacttttt |
407 |
Q |
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| T |
33447145 |
gccctttccggcacggtttgtctatgttcttatgctttcatgatataacagttaacttttgaatgtaatttaaaaacatcttgaatgagtaagacttttt |
33447244 |
T |
|
| Q |
408 |
tctctcttgtaagatagac-nnnnnnnnngtacaataagtagcagttggatttcgtcttgaagcagtcatgaattttctcaaaggagtttgagaataagg |
506 |
Q |
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| T |
33447245 |
tctctcttgtaagatagacaaaaaaaaaagtacaataagtagcaattggatttcgtcttgaagcagtcatgaattttctcaaaggagtttgagaataagg |
33447344 |
T |
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| Q |
507 |
tccagag |
513 |
Q |
| |
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| T |
33447345 |
tccagag |
33447351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 536 - 1015
Target Start/End: Original strand, 33447336 - 33447817
Alignment:
| Q |
536 |
agaataaggtcaagagttgaaatcccgactacaaacataacatatcattactaccatttgtctatnnnnnnnncacttggtaactatacgagtttcagtt |
635 |
Q |
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| T |
33447336 |
agaataaggtccagagttgaaatcccgactacaaacataacatatcattactaccatttgtctataaaaaaaacacttggtaactatacgagtttcagtt |
33447435 |
T |
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| Q |
636 |
ttcctgaatcatttcaatgatttttgaatcttcgacacttttaaattcatgcttaatttaaattttagctcaaggacaatttacatttcaggttgacatc |
735 |
Q |
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| T |
33447436 |
ttcctgaatcatttcaatgatttttgaatcttctacacttttaaattcatgcttaatttaaattttagctcaaggacaatttacatttcaggttgacatc |
33447535 |
T |
|
| Q |
736 |
aacttctatgaagagcccctaggaagaggaaagaatggaagggatgtgtacctaaaagatatctggccaagtaatgaagaggtttcaaaggtagnnnnnn |
835 |
Q |
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| T |
33447536 |
aacttctatgaagagcccctaggaagaggaaagaatggaagggatgtgtacctaaaagatatctggccaagtaatgaagaggtttcaaaggtagaaaaaa |
33447635 |
T |
|
| Q |
836 |
ncagaaactaagctatgagatcaatgttatattgttaatttactctgaatatcatttaataattagactttgacatgtatatttcttgttacaccgcata |
935 |
Q |
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| T |
33447636 |
acagaaattaagctatgagatcaatgtaatattgttaatttactctgaatatcatttaataattagactttgacatgtatatttcttgttaca-cgcata |
33447734 |
T |
|
| Q |
936 |
taggctcttccaacttatgtattgcctgacatgttc-agagcatttatgagactattacaaagg--catcctatgtgggatag |
1015 |
Q |
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| T |
33447735 |
taggctcttcaaacttatgtattgcctgacatgttcaagagcatttatgagactattacaaagggcaatcctatgtgggatag |
33447817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 251 - 313
Target Start/End: Original strand, 9097684 - 9097746
Alignment:
| Q |
251 |
gttcatccgttaacaagagcaaactaccttgcttctcctccattagttgttgcctatgccctt |
313 |
Q |
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| T |
9097684 |
gttcatccattaacgagggctaactacctagcttctcctcctctcgttgttgcctatgccctt |
9097746 |
T |
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