View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447-Insertion-13 (Length: 121)
Name: NF0447-Insertion-13
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447-Insertion-13 |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 3e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 42804870 - 42804980
Alignment:
| Q |
11 |
tttttcactaactgtcgcatataattttaacatgaaagaacatgagaggatccattctcattgaagttaagttatgctttcatctatgttactttggatt |
110 |
Q |
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| T |
42804870 |
tttttcactaactgtcgcatataatttcaacatgaaagaacatgagaggatctattctcattgaagttaagttatgctttcttctatgttactttggatt |
42804969 |
T |
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| Q |
111 |
gaggttttaat |
121 |
Q |
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| T |
42804970 |
gaggttttaat |
42804980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 6e-44
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 42762465 - 42762578
Alignment:
| Q |
8 |
ccgtttttcactaactgtcgcatataattttaacatgaaagaacatgagaggatccattctcattgaagttaagttatgctttcatctatgttactttgg |
107 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||| ||||||||||||||| |
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| T |
42762465 |
ccgtttttcactaactgtcacatataattttaacatgaaagagcatgagaggatccattctcattgaagtgaatttatgctttcttctatgttactttgg |
42762564 |
T |
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| Q |
108 |
attgaggttttaat |
121 |
Q |
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| T |
42762565 |
attgaagttttaat |
42762578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 33048821 - 33048924
Alignment:
| Q |
8 |
ccgtttttcactaactgtcgcatataattttaacatgaaagaacatgagaggatccattctcattgaagttaagttatgctttcatctatgttactttgg |
107 |
Q |
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| T |
33048821 |
ccgtttttcactaactgtcgcatataattttaaca----------tgagaggatccattctcattgaagttaagttatgctttcttctatgttacttagg |
33048910 |
T |
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| Q |
108 |
attgaggttttaat |
121 |
Q |
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| T |
33048911 |
attgaggttttaat |
33048924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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