View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447-Insertion-14 (Length: 990)
Name: NF0447-Insertion-14
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447-Insertion-14 |
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Alignment Details
Target: chr6 (Bit Score: 767; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 767; E-Value: 0
Query Start/End: Original strand, 137 - 963
Target Start/End: Complemental strand, 34867199 - 34866372
Alignment:
| Q |
137 |
acatgttttaaaatatgcaaaaccctgtcaaggttgaactgcttctaaaggcagaattattttctattcgtcatgctgttttcgataaagattttaggca |
236 |
Q |
| |
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| T |
34867199 |
acatgttttaaaatatgcaaaaccctgtcaaggttgaactgcttctaaaggcagaattattttctattcgtcatgctgttttcgataaagattttaggca |
34867100 |
T |
|
| Q |
237 |
acgcctaccctacttcactgatcttgttgaagggataaatttccttaatgattggttttcttggaacttgtatatgcagaaagttagatatatagtggaa |
336 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34867099 |
acgcctaccctacttcactgatcctgttgaagggataaatttccttaatgattggttttcttggaacttgtatatgcagaaagttagatatatattggaa |
34867000 |
T |
|
| Q |
337 |
attttacttttgtttgaggtactgtttatggaaattaagcactaacgtaatctataatgaaagaggtgatgtggttaaactgcttttatataagttgtaa |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34866999 |
attttacttttgtttgaggtactgtttatggaaattaagcactaacgtaatctataatgaaagaggtgttgtggttaaactgcttttatataagttgtaa |
34866900 |
T |
|
| Q |
437 |
attgtttctgcaagcttattgtggaggttattgaaataagttataaacaacttgttgagtgtctcgcaaaatatattaatatggtcagagtagagcttat |
536 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34866899 |
attgtttctgcaagcttattgtggaggttattgaaataagttaaaaacaacttgttgagtgtctcacaaaatatattaatatggtcagagtagagcttat |
34866800 |
T |
|
| Q |
537 |
aagggggtggatatccttcacattactaactgattttgtagggttgagttagagccaatccaaattttaagacagcttttaaacatgttataagctattt |
636 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866799 |
aagggggtggatatccttcacattactaactgattttgtagggttgagttagagccaatccaaattttaagacagcttttaaacatgttataagctattt |
34866700 |
T |
|
| Q |
637 |
ttataagttctgtcatgttctgaacacttcgacaagggcttatgtcatcaggtaaattcaaataagttgtaaataagctcttccaaacactcccttaatt |
736 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866699 |
ttataagttctgtcatgttctgaacacttcgacaagggcttatgtcatcaggtaaattcaaataagttgtaaataagctcttccaaacactcccttaatt |
34866600 |
T |
|
| Q |
737 |
caatttataggtggcttatttattaatgcaagtaaataagtaaaatattgacaggaacttgggtatttt-ggagggcctaagtctagcatcgggtagtat |
835 |
Q |
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| T |
34866599 |
caatttataggtggcttatttattaatgcaagtaaataagtaaaatattgacaggaacttgggtattttgggagggcctaagtctagcatcgggtagtat |
34866500 |
T |
|
| Q |
836 |
ttgagttgttaggttcttccttcttgacagctagctttaagggagatttcttcaaaggctctcgactacttatcaaatggtatcagagagactgg-tgtc |
934 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
34866499 |
ttgagttgttaggttcttccttcttgacagctagctttaagggagatttctccaaatgctctcgactacttatcaaatggtatc--agagactggttgtc |
34866402 |
T |
|
| Q |
935 |
gatgtctcac-aagtgctacctacagaagg |
963 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
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| T |
34866401 |
gatgtctcacaaagtgctacctacagaagg |
34866372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 34867689 - 34867558
Alignment:
| Q |
8 |
agaatcagtaaaatcaccctgttaatctgccatgtttcagtattgagcttgatttttgaggttgtatattgttttcactcagataacaccgaaatgatcc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34867689 |
agaatcagtaaaatcaccctgttaatctgccatgtttcagtattgagcttgatttttgagtttgtatattgttttcactcagataacaccgaaatgatcc |
34867590 |
T |
|
| Q |
108 |
ttaaaatctcatgccatatattgattgtgaca |
139 |
Q |
| |
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|||||||||||||||| ||||||||||||||| |
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| T |
34867589 |
ttaaaatctcatgccacatattgattgtgaca |
34867558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 387 - 818
Target Start/End: Original strand, 51857107 - 51857537
Alignment:
| Q |
387 |
tctataatgaaagaggtgatgtggttaaactgcttttatataagttgtaaattgtttctgcaagcttattgtggaggttattgaaataagttataaacaa |
486 |
Q |
| |
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||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| |
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| T |
51857107 |
tctataatgaaagaggtgatgcagttgaactgcttttttataagttgtaaattgtttctgcaagcttattgtggaggttactgaaataaggtaaaaacaa |
51857206 |
T |
|
| Q |
487 |
cttgttgagtgtctcgcaaaatatattaatatggtcagagtagagcttataagggggtggatatccttcacattactaactgattttgtagggttgagtt |
586 |
Q |
| |
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||||||||| ||| | ||| ||||| |||||||| || ||||| ||||| |||| ||| |||||||||||| |||| || |||||||||||||||||||| |
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|
| T |
51857207 |
cttgttgagagtcccacaacatatagtaatatggccaaagtag-gcttagaaggtggtcgatatccttcactttacaaattgattttgtagggttgagtt |
51857305 |
T |
|
| Q |
587 |
agagccaatccaaattttaagacagcttttaaacatgttataagctatttttataagttctgtcatgttctgaacacttcgacaagggcttatgtcatca |
686 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | |||||||| |
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| T |
51857306 |
agagccaatccaaattttaagacagcttttaaacatgttataagctatttttataagttctgtcatgttccaaacacttcgacaggggcatgtgtcatca |
51857405 |
T |
|
| Q |
687 |
ggtaaattcaaataagttgtaaataagctcttccaaacactcccttaattcaatttataggtggcttatttattaatgcaagtaaataagtaaaatattg |
786 |
Q |
| |
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|||||||||||| ||||||| | |||| ||||||||||||||||||||| | ||||||| |||||||||||||||||||||||| || |||||||||||| |
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| T |
51857406 |
ggtaaattcaaaaaagttgttagtaagatcttccaaacactcccttaatactatttatatgtggcttatttattaatgcaagtagatgagtaaaatattg |
51857505 |
T |
|
| Q |
787 |
acaggaacttgggtattttggagggcctaagt |
818 |
Q |
| |
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||||| ||||||||||||||| ||||||||| |
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| T |
51857506 |
acagggacttgggtattttgggaggcctaagt |
51857537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 51856675 - 51856765
Alignment:
| Q |
162 |
tgtcaaggttgaactgcttctaaaggcagaattattttctattcgtcatgctgttttcgataaagattttaggcaacgcctaccctacttc |
252 |
Q |
| |
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||||| ||||||| ||| || ||||||| || |||||||| | |||||| |||||| || ||| |||||||||||||||||| |||||| |
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| T |
51856675 |
tgtcatggttgaagtgcatccaaaggcaccatgattttctacttgtcatgttgttttttattaagtttttaggcaacgcctaccatacttc |
51856765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 689 - 726
Target Start/End: Complemental strand, 11171515 - 11171478
Alignment:
| Q |
689 |
taaattcaaataagttgtaaataagctcttccaaacac |
726 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| |
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| T |
11171515 |
taaattcaaataagttgtaaataaactcttccaaacac |
11171478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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