View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447-Insertion-15 (Length: 1004)
Name: NF0447-Insertion-15
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447-Insertion-15 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 9e-82; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 9e-82
Query Start/End: Original strand, 272 - 430
Target Start/End: Complemental strand, 2812236 - 2812078
Alignment:
| Q |
272 |
tcatcatcgtagaaaaaatttattttactaattctaaacaaacaacgcaaaaatttaaatataatatagctctcagaatagcgtatactgctacaatggc |
371 |
Q |
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| T |
2812236 |
tcatcatcgtagaaaaaatttattttactaattctaaacaaacaacacaaaaatttaaatataatatagctctcagaatagcgtatactgctacaatggc |
2812137 |
T |
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| Q |
372 |
tgaatatcaccacacatatattagattcaattcagaaacataactcattaactcttaac |
430 |
Q |
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| T |
2812136 |
tgaatatcaccacacatatattagattcaattcagaaacataactcattaactcttaac |
2812078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 663 - 879
Target Start/End: Complemental strand, 2811917 - 2811695
Alignment:
| Q |
663 |
aaatagattcaaagaaattgaacactgagaagtgagaggatgagagaagctttggtgtgtaaatttataggcaaggttgtgaatgactagttg-----tg |
757 |
Q |
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| T |
2811917 |
aaatagattcaaagaaattgaacactgagaagtgagaggctgagagaagctt-ggtgtgtcaatttataggcaaggttgtgaatgactagttggtctttg |
2811819 |
T |
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| Q |
758 |
gatatttactattagcaccaccttcttttaatacaccctctcataaggtgtttgtcttttaattat--ttatttgaataaagttagtgtctcacacaatt |
855 |
Q |
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| T |
2811818 |
gatatttactattagcaccaccgtctattaatacaccctctcataaggtacttgtcttttaattattattaattgaataaagttagtgtctcacacaatt |
2811719 |
T |
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| Q |
856 |
actctattaagcaacatagcatat |
879 |
Q |
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| T |
2811718 |
actctattaagaaacatagcatat |
2811695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 2812487 - 2812382
Alignment:
| Q |
42 |
tgaaataataaaagttcaaaaaattctctataacaaaaccatggcatatgacagactaaaattcggtgtatgtaattcaaacttttaaattacacacgtc |
141 |
Q |
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| T |
2812487 |
tgaaataataaaagttaaaaaaattctctataataaaacc---gcatataacagactaaaattcggtgtatgtaattcaaacttttaaattacacacatc |
2812391 |
T |
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| Q |
142 |
tattttcag |
150 |
Q |
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| T |
2812390 |
tattttcag |
2812382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 517 - 629
Target Start/End: Complemental strand, 2812013 - 2811901
Alignment:
| Q |
517 |
tgatcatcagagacttaattaaatactaggaatcatagaacaaatccatcatattgttgcagnnnnnnnctcatcaaatgattcattcaacaacgaaaat |
616 |
Q |
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| T |
2812013 |
tgatcatcagagacttaattaaatactaggaatcatggaacaaatccatcatattgttgcagtttttttctcatcaaatgatccattccataacacaaat |
2811914 |
T |
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| Q |
617 |
agattcaaagaaa |
629 |
Q |
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| T |
2811913 |
agattcaaagaaa |
2811901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 921 - 998
Target Start/End: Complemental strand, 2811696 - 2811620
Alignment:
| Q |
921 |
atcaatgttttcctccacaaatcaaatggtacagtttgaattcttgaaaatactgcaacaacattgattctgaacaag |
998 |
Q |
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| T |
2811696 |
atcaatgttttcctcctcaaatcaaatggtacagtttg-attcttgatataactgcaaccacatggattctgaacaag |
2811620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 517 - 578
Target Start/End: Complemental strand, 2806528 - 2806471
Alignment:
| Q |
517 |
tgatcatcagagacttaattaaatactaggaatcatagaacaaatccatcatattgttgcag |
578 |
Q |
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| T |
2806528 |
tgatcatcagagacttaa----atactaagaatcatggaacgaatccatcatattgttgcag |
2806471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 535 - 578
Target Start/End: Complemental strand, 8132726 - 8132683
Alignment:
| Q |
535 |
ttaaatactaggaatcatagaacaaatccatcatattgttgcag |
578 |
Q |
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| T |
8132726 |
ttaaatactaggaatcatggaacgaatccatcgtattgttgcag |
8132683 |
T |
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