View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0447-Insertion-16 (Length: 640)
Name: NF0447-Insertion-16
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447-Insertion-16 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 8 - 456
Target Start/End: Original strand, 35551022 - 35551469
Alignment:
| Q |
8 |
gtattaaggttgataattcatttttctcaagaaattaactgtgatttcgacttccagtatattcagagtcactaaaatttcactaaacaccaacatagag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35551022 |
gtattaaggttgataattcatttttctcaagaaattaactgtgattttgacttccagtatattcagagtcactaaaatttcattaaacaccaacatagag |
35551121 |
T |
|
| Q |
108 |
caccagaaaacgattgnnnnnnnnngttatgagataaaagatgaatcaaacgtgtacctcaataaaagagatgaagaaggaacgtcgttcaccgccgttg |
207 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35551122 |
caccagaaaacgattgaaaaaaaa-gttatgggataaaaaatgaatcaaacgtgtacctcaaaaaaagagatgaagaaggaacgtcgttcaccgccgttg |
35551220 |
T |
|
| Q |
208 |
attttgggtttgagcgatgaagaaggagcgttggtcttgattgcactgtgatatcagggaagggaatggggagaaggcgtagaagaaagtcgtttccgtg |
307 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35551221 |
attttggctttgagctatgaagaaggagcgttggtcttgattgcactgtgatatcagggaagggaatggggagaaggcgtagaagaaagtcgtttccgtg |
35551320 |
T |
|
| Q |
308 |
cttgggtttataaagttgttttcttagcgattaataatcctacactagtggagggtgacacaacacaactaaagagaatcaatcgcaacaactttatgaa |
407 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35551321 |
cttgggtttataaagttgtttacttagcgattaataatcctacactagtggagggtgacacaacacaactaaagagaatcaatcgcaacaactttatgaa |
35551420 |
T |
|
| Q |
408 |
tttacacttgtcaagaggattccaacctcggagctaaagacaatttgtc |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35551421 |
tttacacttgtcaagaggattccaacctcggagctaaagacaatttgtc |
35551469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 520 - 640
Target Start/End: Original strand, 18022053 - 18022173
Alignment:
| Q |
520 |
ggcaaaagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcggattggttttacacgtgtaataatctcagctcacac |
619 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18022053 |
ggcaaaagttatggtgcataagtccttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacac |
18022152 |
T |
|
| Q |
620 |
tctccttcacatctcatactc |
640 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
18022153 |
tctccttcacatctcatactc |
18022173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 449 - 519
Target Start/End: Original strand, 35551495 - 35551565
Alignment:
| Q |
449 |
aatttgtcgttttaaaatcctacaccgttaaactaaagttatttatatgaggtgtccgagaacttacaaga |
519 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35551495 |
aatttgtcgttttaaaatcctacacggttaaactaaagttatttatatgaggtgtccgagaacttacaaga |
35551565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 520 - 640
Target Start/End: Complemental strand, 9180157 - 9180037
Alignment:
| Q |
520 |
ggcaaaagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcggattggttttacacgtgtaataatctcagctcacac |
619 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9180157 |
ggcaaaagttatggtgcataagtccttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacac |
9180058 |
T |
|
| Q |
620 |
tctccttcacatctcatactc |
640 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
9180057 |
tctccttcacatctcatactc |
9180037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 4e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 520 - 640
Target Start/End: Original strand, 3925578 - 3925698
Alignment:
| Q |
520 |
ggcaaaagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcggattggttttacacgtgtaataatctcagctcacac |
619 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3925578 |
ggcaaaagttatggtgcataagtccttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcggctcacac |
3925677 |
T |
|
| Q |
620 |
tctccttcacatctcatactc |
640 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3925678 |
tctccttcacatctcatactc |
3925698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 608
Target Start/End: Complemental strand, 36637003 - 36636915
Alignment:
| Q |
520 |
ggcaaaagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcggattggttttacacgtgtaataatc |
608 |
Q |
| |
|
|||||||||| | |||||||||| || |||||| ||||||||||| | ||| ||||| || |||| |||||||||||||||||||| |
|
|
| T |
36637003 |
ggcaaaagttattatgcataagtcattttcttatgtaccctacataaacacttcacaaccatcagatttgttttacacgtgtaataatc |
36636915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 54751602 - 54751717
Alignment:
| Q |
525 |
aagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcggattggttttacacgtgtaataatctcagctcacactctcc |
624 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54751602 |
aagttatggtgcataagtgcttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacactctcc |
54751701 |
T |
|
| Q |
625 |
ttcacatctcatactc |
640 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
54751702 |
ttcacatctcatactc |
54751717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 525 - 639
Target Start/End: Complemental strand, 30411141 - 30411027
Alignment:
| Q |
525 |
aagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcggattggttttacacgtgtaataatctcagctcacactctcc |
624 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30411141 |
aagttatggtgcataagggtttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacactctcc |
30411042 |
T |
|
| Q |
625 |
ttcacatctcatact |
639 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
30411041 |
ttcacatctcatact |
30411027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 608
Target Start/End: Original strand, 33868155 - 33868243
Alignment:
| Q |
520 |
ggcaaaagttttggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcggattggttttacacgtgtaataatc |
608 |
Q |
| |
|
|||||||||| | |||||||||| || ||||||||||||| ||||| | ||| ||||| || |||| ||||||| ||||||||||| |
|
|
| T |
33868155 |
ggcaaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatctgatttattttacatgtgtaataatc |
33868243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University