View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0447-Insertion-17 (Length: 980)

Name: NF0447-Insertion-17
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0447-Insertion-17
NF0447-Insertion-17
[»] chr2 (11 HSPs)
chr2 (152-849)||(20169579-20170245)
chr2 (172-706)||(20143386-20143912)
chr2 (486-673)||(20154324-20154511)
chr2 (152-332)||(20250940-20251116)
chr2 (759-863)||(20143276-20143379)
chr2 (6-111)||(20143982-20144081)
chr2 (6-82)||(20358554-20358630)
chr2 (44-111)||(20251193-20251260)
chr2 (280-323)||(20358303-20358346)
chr2 (12-49)||(20251270-20251307)
chr2 (186-225)||(20358348-20358387)
[»] chr3 (16 HSPs)
chr3 (485-672)||(5155169-5155356)
chr3 (454-641)||(16023879-16024066)
chr3 (453-653)||(46469610-46469810)
chr3 (340-548)||(47398186-47398403)
chr3 (340-609)||(46478254-46478532)
chr3 (441-653)||(4582480-4582692)
chr3 (340-586)||(46490019-46490274)
chr3 (340-391)||(5155459-5155510)
chr3 (447-588)||(46497334-46497475)
chr3 (340-405)||(51942268-51942333)
chr3 (340-403)||(47414830-47414893)
chr3 (349-406)||(46550160-46550217)
chr3 (345-388)||(46469884-46469927)
chr3 (340-406)||(45901072-45901138)
chr3 (345-401)||(46543295-46543351)
chr3 (6-39)||(46473323-46473356)
[»] chr8 (5 HSPs)
chr8 (424-616)||(9677601-9677793)
chr8 (419-673)||(9693337-9693594)
chr8 (498-575)||(21465978-21466055)
chr8 (348-408)||(9677516-9677576)
chr8 (345-405)||(9693254-9693314)
[»] chr4 (7 HSPs)
chr4 (455-609)||(35160483-35160637)
chr4 (475-536)||(15555107-15555168)
chr4 (340-405)||(35160696-35160761)
chr4 (465-575)||(37147411-37147521)
chr4 (343-536)||(35154165-35154367)
chr4 (348-391)||(15555261-15555304)
chr4 (340-391)||(37147603-37147654)
[»] chr6 (1 HSPs)
chr6 (485-592)||(16967890-16967997)
[»] chr7 (7 HSPs)
chr7 (342-391)||(17734707-17734756)
chr7 (342-391)||(16720723-16720772)
chr7 (342-391)||(16729596-16729645)
chr7 (342-391)||(17697737-17697786)
chr7 (342-391)||(17706668-17706717)
chr7 (342-391)||(17716656-17716705)
chr7 (342-391)||(17743947-17743996)


Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 152 - 849
Target Start/End: Original strand, 20169579 - 20170245
Alignment:
Q  152 ccgataactaaatcaacttattaaaatacatcctgcaactaagtaaatcaaatcacatagaaggcaccagaggatagcaccaacgaggttatttcatgat 251  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  20169579 ccgataactacatcaacttattaaaatacatcctgcaactaagtaaatcaaatcacatagaaggcaccagaggatagcaccaacgaggttatttcaagaa 20169678  T
Q  252 taacaagaagaagnnnnnnnncagagatatgcacaccttggttagaaaatcaagtgtagctggcgttgctttgtaattatcacgtactatttgtttgaag 351  Q
     || || || ||         | ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  20169679 gaaaaaaaaaaa---------ctgagatatgcacaccttggttagaaaatcaagtgaagccggcgttgctttgtaattatcacgtactatttgtttgaag 20169769  T
Q  352 gaaggttgaagagaaagggtttgttcaacccatacaccatcgacaaaagagaggcgaccatgagcaacgtccttgagtaggacggaatggagataagagg 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20169770 gaaggttgaagagaaagggtttgttcaacccatacaccatcgacaaaagagaggcgaccatgagcaacgtccttcagtaggacggaatggagataagagg 20169869  T
Q  452 cgaaggagttaagatgattggtagatttgaagcggaggaagtcgacaagttgttgttgtgtgggaccttcagaaccagcagcgataaggcttagcacaat 551  Q
    ||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||| ||||||||    
T  20169870 cgaaggaattgagatgattggtggatttgaaacggaggaagtcgacaagttgttgttttgtgggaccttcagaaccagtagcaataaggctgagcacaat 20169969  T
Q  552 ttggagtgatagtggcgaaaacacgacgttcttgtctgattgtttcaacaagagatgtctggcgatgtcgagggaaacctttgtttggttagtgattgat 651  Q
    ||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  20169970 ttgaagtgatagtggtgaaaacacgacgtttttgtctgattgtttcaacaacagatgtctggccatgtcgagggaaacctttgtttggttagtgattgat 20170069  T
Q  652 tcttgaagagccattgttcttcagactttttaactgactaagactcgaattcttgagacactttttaaaagactattactctctgttttgtttgcaattc 751  Q
    ||||| |||||||||||| |||||| ||| |||||||||||||| |                   ||||||||||||||||| |||||||||||||||||    
T  20170070 tcttggagagccattgttattcagattttataactgactaagacac-------------------taaaagactattactctttgttttgtttgcaattc 20170150  T
Q  752 cttctgctttatatagaggcgtttccttgtgcttcaagatatatacgagataatattgaaccccttattttctattacaatcttttatgttaaataaa 849  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  20170151 cttctgctttatatagaggcgtttccttgtgcttcaagatatatac--gataatattgaa-cccttattttctattgcaatcttttatgttaaataaa 20170245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 172 - 706
Target Start/End: Complemental strand, 20143912 - 20143386
Alignment:
Q  172 ttaaaatacatcctgcaactaagtaaatcaaatcacatagaaggcaccagaggatagcaccaacgaggttatttcat-gattaacaagaagaagnnnnnn 270  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||         ||||| |||||||| |||||||          
T  20143912 ttaaaatacatcctgcaattaagtaaatcaaatcacatagaaggcaccagaggatagcaccaa---------ttcattgattaacaggaagaagaaaaaa 20143822  T
Q  271 nncagagatatgcacaccttggttagaaaatcaagtgtagctggcgttgctttgtaattatcacgtactatttgtttgaaggaaggttgaagagaaaggg 370  Q
        |||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20143821 aaatgagatatgcaaaccttggttagaaaatcaagtgaagccggcgttgctttgtaattatcacgtactatttgtttgaaggaaggttgaagagaaaggg 20143722  T
Q  371 tttgttcaacccatacaccatcgacaaaagagaggcgaccatgagcaacgtccttgagtaggacggaatggagataagaggcgaaggagttaagatgatt 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20143721 tttgttcaacccatacaccatcgacaaaagagaggcgaccatgagcaaagtccttgagtaggacggaatggagataagaggtgaaggagttaagatgatt 20143622  T
Q  471 ggtagatttgaagcggaggaagtcgacaagttgttgttgtgtgggaccttcagaaccagcagcgataaggcttagcacaatttggagtgatagtggcgaa 570  Q
    ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20143621 ggtggatttgaagcggaggaagtcgacaagttgttgttgtgtgggatcttcagaaccagcagcgataaggctgagcacaatttggagtgatagtggcgaa 20143522  T
Q  571 aacacgacgttcttgtctgattgtttcaacaagagatgtctggcgatgtcgagggaaacctttgtttggttagtgattgattcttgaagagccattgttc 670  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20143521 aacacgatgttcttgtctgattgtttcaacaacagatgtctggcgatgtcgagggaaacctttgtttggttagtgattgattcttgaagagccattgttc 20143422  T
Q  671 ttcagactttttaactgactaagactcgaattcttg 706  Q
    ||||||||||||||||||||||||||||||||||||    
T  20143421 ttcagactttttaactgactaagactcgaattcttg 20143386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 486 - 673
Target Start/End: Complemental strand, 20154511 - 20154324
Alignment:
Q  486 gaggaagtcgacaagttgttgttgtgtgggaccttcagaaccagcagcgataaggcttagcacaatttggagtgatagtggcgaaaacacgacgttcttg 585  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||| | ||||| ||||||||| | |||||||||||| | |||||||    
T  20154511 gaggaagtcgacaagctgttgttgtgtgggaccttcagagccagcagcggtgaggctgaacacaacttggagtgacactggcgaaaacacaatgttcttg 20154412  T
Q  586 tctgattgtttcaacaagagatgtctggcgatgtcgagggaaacctttgtttggttagtgattgattcttgaagagccattgttcttc 673  Q
    |||||||||||||| || |||||| |||||||||||||| |||||||| ||||||| |||||||||||||| ||||||| ||||||||    
T  20154411 tctgattgtttcaagaacagatgtttggcgatgtcgaggaaaacctttatttggttggtgattgattcttggagagccactgttcttc 20154324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 152 - 332
Target Start/End: Complemental strand, 20251116 - 20250940
Alignment:
Q  152 ccgataactaaatcaacttattaaaatacatcctgcaactaagtaaatcaaatcacatagaaggcaccagaggatagcaccaacgaggttatttcatgat 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     | |||   | ||    
T  20251116 ccgataactaaatcaacttattaaaatacatcctgcaactaagtaaatcaaatcacatagaaggcaccagaggatagcaccaa----ttcattgattaat 20251021  T
Q  252 taacaagaagaagnnnnnnnncagagatatgcacaccttggttagaaaatcaagtgtagctggcgttgctttgtaattatc 332  Q
    ||||| |||||||        | ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  20251020 taacaggaagaagaaaaaaaactgagatatgcacaccttggttagaaaatcaagtgaagccggcgttgctttgtaattatc 20250940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 759 - 863
Target Start/End: Complemental strand, 20143379 - 20143276
Alignment:
Q  759 tttatatagaggcgtttccttgtgcttcaagatatatacgagataatattgaaccccttattttctattacaatcttttatgttaaataaaaaataaata 858  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  20143379 tttatatagaggcgtttccttgtgcttcaagatatatacgagataatattgaa-cccttattttctattacaatcttttatgttaaataaaaaataaata 20143281  T
Q  859 ttgcg 863  Q
    |||||    
T  20143280 ttgcg 20143276  T

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Target: chr2; HSP #6
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 20144081 - 20143982
Alignment:
Q  6 caattcatacctccaaatatacaatacaactttcaattcaaataaatgcaaaacattataactatgaacctatctttagggttaggctacttggtcttta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||    
T  20144081 caattcatacctccaaatatacaatacaactttcaattcaaataaatgcaaaacattataactatgaacctatctt------taggctacttggtcttta 20143988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 20358630 - 20358554
Alignment:
Q  6 caattcatacctccaaatatacaatacaactttcaattcaaataaatgcaaaacattataactatgaacctatcttt 82  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20358630 caattcatacctttaaatatacaatacaactttcaattcaaataaatgcaaaacattataactatgaacctatcttt 20358554  T

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Target: chr2; HSP #8
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 20251260 - 20251193
Alignment:
Q  44 caaataaatgcaaaacattataactatgaacctatctttagggttaggctacttggtctttagaagta 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20251260 caaataaatgcaaaacattataactatgaacctatctttagggttaggctacttggtctttagaagta 20251193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 280 - 323
Target Start/End: Complemental strand, 20358346 - 20358303
Alignment:
Q  280 atgcacaccttggttagaaaatcaagtgtagctggcgttgcttt 323  Q
    |||||||||||||||||||||||||||| ||| |||||||||||    
T  20358346 atgcacaccttggttagaaaatcaagtgaagccggcgttgcttt 20358303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 20251307 - 20251270
Alignment:
Q  12 atacctccaaatatacaatacaactttcaattcaaata 49  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  20251307 atacctccaaatatataatacaactttcaattcaaata 20251270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 20358387 - 20358348
Alignment:
Q  186 gcaactaagtaaatcaaatcacatagaaggcaccagagga 225  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  20358387 gcaactaagtaaatcaaatcacataaaaggcactagagga 20358348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 9e-42; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 485 - 672
Target Start/End: Complemental strand, 5155356 - 5155169
Alignment:
Q  485 ggaggaagtcgacaagttgttgttgtgtgggaccttcagaaccagcagcgataaggcttagcacaatttggagtgatagtggcgaaaacacgacgttctt 584  Q
    |||||||||||| ||| ||||||||||||||||| ||||| ||||||||||| | |||||| |||| ||| || || |||||||||||||| | ||||||    
T  5155356 ggaggaagtcgagaagctgttgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 5155257  T
Q  585 gtctgattgtttcaacaagagatgtctggcgatgtcgagggaaacctttgtttggttagtgattgattcttgaagagccattgttctt 672  Q
    |||| ||| |||||| || |||||| ||||||||   |||||||| ||||||||||| ||||||||||| || |||||||||||||||    
T  5155256 gtctaattctttcaagaacagatgtttggcgatgcgtagggaaacatttgtttggttggtgattgattcatggagagccattgttctt 5155169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 454 - 641
Target Start/End: Complemental strand, 16024066 - 16023879
Alignment:
Q  454 aaggagttaagatgattggtagatttgaagcggaggaagtcgacaagttgttgttgtgtgggaccttcagaaccagcagcgataaggcttagcacaattt 553  Q
    |||||||| |||| ||||||||||| | |||||||||||| || ||| ||||||||||| || || || || ||||||||||||||||| || |||| ||    
T  16024066 aaggagttgagattattggtagattcggagcggaggaagtggagaagctgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaactt 16023967  T
Q  554 ggagtgatagtggcgaaaacacgacgttcttgtctgattgtttcaacaagagatgtctggcgatgtcgagggaaacctttgtttggtt 641  Q
    | |||||||| || ||||||| || ||| ||||||||||||||  | ||||||||| || |||||| |||||| || || ||||||||    
T  16023966 gaagtgatagcggagaaaacatgatgttattgtctgattgttttgaaaagagatgtttgacgatgttgagggatacgttggtttggtt 16023879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 453 - 653
Target Start/End: Complemental strand, 46469810 - 46469610
Alignment:
Q  453 gaaggagttaagatgattggtagatttgaagcggaggaagtcgacaagttgttgttgtgtgggaccttcagaaccagcagcgataaggcttagcacaatt 552  Q
    ||||||||| ||||| | | | |||||| | |||||||| |||| |||||||||||||||  |||| |||||  ||||||||| || | | |||| || |    
T  46469810 gaaggagttgagatggtcgatggatttggaacggaggaattcgagaagttgttgttgtgtacgaccctcagaggcagcagcgacaatgttgagcataact 46469711  T
Q  553 tggagtgatagtggcgaaaacacgacgttcttgtctgattgtttcaacaagagatgtctggcgatgtcgagggaaacctttgtttggttagtgattgatt 652  Q
    |||||||| || ||||||||||| |||||||||||||||| |||  | ||||||||| |||| ||||  |||||||| || |||||||| ||||||||||    
T  46469710 tggagtgacagcggcgaaaacacaacgttcttgtctgattcttttgagaagagatgtttggccatgttaagggaaactttggtttggttggtgattgatt 46469611  T
Q  653 c 653  Q
    |    
T  46469610 c 46469610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 340 - 548
Target Start/End: Original strand, 47398186 - 47398403
Alignment:
Q  340 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccatcgacaaaagagaggcga---ccat------gagcaacgtccttgagta 430  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||||||||||||   ||||      ||| | | ||||||||||    
T  47398186 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccacacgccattgacgaaagagaggcgaggtccatcggtgggagaagcatccttgagta 47398285  T
Q  431 ggacggaatggagataagaggcgaaggagttaagatgattggtagatttgaagcggaggaagtcgacaagttgttgttgtgtgggaccttcagaaccagc 530  Q
     ||| ||| |||||| ||||||||||||||| ||||| |  || || ||| | |  |||||||||| ||| | ||||||||||||||| ||||| |||||    
T  47398286 cgactgaaaggagatgagaggcgaaggagttgagatgttcagtggacttggacccaaggaagtcgagaagctcttgttgtgtgggaccctcagagccagc 47398385  T
Q  531 agcgataaggcttagcac 548  Q
    |||| | | |||||||||    
T  47398386 agcgttgatgcttagcac 47398403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 340 - 609
Target Start/End: Complemental strand, 46478532 - 46478254
Alignment:
Q  340 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccatcgacaaaagagaggcga---ccat------gagcaacgtccttgagta 430  Q
    ||||||| ||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||| ||   |||       ||| | ||||   ||| |    
T  46478532 atttgttggaaggaaggttgaagagaaagggtttgatcaacccaaacaccgtcgacgaaagagaggagaggaccaccggcgggagaagcgtcggagagga 46478433  T
Q  431 ggacggaatggagataagaggcgaaggagttaagatgattggtagatttgaagcggaggaagtcgacaagttgttgttgtgtgggaccttcagaaccagc 530  Q
     |||||||  ||| |  || |||||| |||| ||||||| ||| |||||| |  | ||||||| || |||||||||||| |||||||| ||||||||||     
T  46478432 tgacggaaacgagctgtgaagcgaagtagttgagatgatcggtggatttggattgaaggaagttgaaaagttgttgttgagtgggaccctcagaaccaga 46478333  T
Q  531 agcgataaggcttagcacaatttggagtgatagtggcgaaaacacgacgttcttgtctgattgtttcaacaagagatgt 609  Q
    |||||| |  |||||||||| ||||||||| ||||| |||||||||| ||| |||||||||| |||  | |||||||||    
T  46478332 agcgattatacttagcacaacttggagtgaaagtggagaaaacacgatgttgttgtctgattctttggagaagagatgt 46478254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 441 - 653
Target Start/End: Original strand, 4582480 - 4582692
Alignment:
Q  441 gagataagaggcgaaggagttaagatgattggtagatttgaagcggaggaagtcgacaagttgttgttgtgtgggaccttcagaaccagcagcgataagg 540  Q
    ||||| ||| || |||||||| |||||||  || |||||| || | |||||||||| ||| |||| |  |||||| || ||||| ||||||||||| | |    
T  4582480 gagatgagaagcaaaggagttgagatgatcagttgatttggagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatg 4582579  T
Q  541 cttagcacaatttggagtgatagtggcgaaaacacgacgttcttgtctgattgtttcaacaagagatgtctggcgatgtcgagggaaacctttgtttggt 640  Q
    || ||| ||| |||||| || ||||| |||||||| | |||||| ||||||| |||  | ||||||| | |||||||   ||||||||| ||||||||||    
T  4582580 ctgagcgcaacttggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggt 4582679  T
Q  641 tagtgattgattc 653  Q
    |||||||||||||    
T  4582680 tagtgattgattc 4582692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 340 - 586
Target Start/End: Complemental strand, 46490274 - 46490019
Alignment:
Q  340 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccatcgacaaaagagaggcga------cca---tgagcaacgtccttgagta 430  Q
    |||||||||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||| |||      |||    ||||| |||| ||||| |    
T  46490274 atttgtttgaaggaaggttgaagagaaagggttttttccacccacacaccgtcgacaaaagagagacgaggtccgccagcgggagcaccgtctttgagaa 46490175  T
Q  431 ggacggaatggagataagaggcgaaggagttaagatgattggtagatttgaagcggaggaagtcgacaagttgttgttgtgtgggaccttcagaaccagc 530  Q
     |||||||  ||| | ||||||||| ||||| || |||| ||| || ||  |  |||||||||| | ||| |||||||||||||  || ||||| |||||    
T  46490174 tgacggaaacgagcttagaggcgaatgagttgagttgatcggtggagttagattggaggaagtcaagaagctgttgttgtgtggagccgtcagagccagc 46490075  T
Q  531 agcgataaggcttagcacaatttggagtgatagtggcgaaaacacgacgttcttgt 586  Q
    |||||| | ||| || |||| |||||| || |||||||| ||||| | ||||||||    
T  46490074 agcgatgatgctgagtacaacttggagcgaaagtggcgataacacaatgttcttgt 46490019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 340 - 391
Target Start/End: Complemental strand, 5155510 - 5155459
Alignment:
Q  340 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccat 391  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5155510 atttctttgaaggaaggttgaagagaaagggtttgttcaacccatacaccat 5155459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 447 - 588
Target Start/End: Complemental strand, 46497475 - 46497334
Alignment:
Q  447 agaggcgaaggagttaagatgattggtagatttgaagcggaggaagtcgacaagttgttgttgtgtgggaccttcagaaccagcagcgataaggcttagc 546  Q
    ||||||||||||||| || |||| ||| |||||| |  ||||||||| || |||||||||||||||||| || || || |||| |||||| | |||||||    
T  46497475 agaggcgaaggagttgagttgataggtggatttggattggaggaagttgagaagttgttgttgtgtggggccctcggagccagtagcgatgatgcttagc 46497376  T
Q  547 acaatttggagtgatagtggcgaaaacacgacgttcttgtct 588  Q
    |||| ||| ||||| ||||| || ||||| |  |||||||||    
T  46497375 acaacttgtagtgaaagtggagataacaccatattcttgtct 46497334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 51942333 - 51942268
Alignment:
Q  340 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccatcgacaaaagagagg 405  Q
    |||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| || ||||||    
T  51942333 atttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcgacgaaggagagg 51942268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 340 - 403
Target Start/End: Original strand, 47414830 - 47414893
Alignment:
Q  340 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccatcgacaaaagaga 403  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||  |||| |||||||||||    
T  47414830 atttgtttgaaggaaggtttaagagaaagggattgttcaacccataggccattgacaaaagaga 47414893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 46550160 - 46550217
Alignment:
Q  349 aaggaaggttgaagagaaagggtttgttcaacccatacaccatcgacaaaagagaggc 406  Q
    ||||||||||||||||||||||||||||||| |||  |||||| ||| ||||||||||    
T  46550160 aaggaaggttgaagagaaagggtttgttcaatccacgcaccattgacgaaagagaggc 46550217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 345 - 388
Target Start/End: Complemental strand, 46469927 - 46469884
Alignment:
Q  345 tttgaaggaaggttgaagagaaagggtttgttcaacccatacac 388  Q
    |||||||||||||||||||||||||||||| |||||||| ||||    
T  46469927 tttgaaggaaggttgaagagaaagggtttgatcaacccacacac 46469884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 340 - 406
Target Start/End: Complemental strand, 45901138 - 45901072
Alignment:
Q  340 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccatcgacaaaagagaggc 406  Q
    ||||||| ||||||||||||||||||||| ||||| |||||| | ||||||| | ||| ||||||||    
T  45901138 atttgttggaaggaaggttgaagagaaagtgtttgatcaaccaacacaccattggcaacagagaggc 45901072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 345 - 401
Target Start/End: Complemental strand, 46543351 - 46543295
Alignment:
Q  345 tttgaaggaaggttgaagagaaagggtttgttcaacccatacaccatcgacaaaaga 401  Q
    |||||||||| |||||| || ||| | |||||||||||||||||||| |||||||||    
T  46543351 tttgaaggaatgttgaaaagtaagtgattgttcaacccatacaccattgacaaaaga 46543295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 46473356 - 46473323
Alignment:
Q  6 caattcatacctccaaatatacaatacaactttc 39  Q
    ||||||||||||||||||||| ||||||||||||    
T  46473356 caattcatacctccaaatatataatacaactttc 46473323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 1e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 424 - 616
Target Start/End: Original strand, 9677601 - 9677793
Alignment:
Q  424 ttgagtaggacggaatggagataagaggcgaaggagttaagatgattggtagatttgaagcggaggaagtcgacaagttgttgttgtgtgggaccttcag 523  Q
    ||||| ||||| ||| |||||| |||| |||||||||| ||||||| | | |||||||| ||||||||||||| ||| |||||||| || ||||| ||||    
T  9677601 ttgaggaggacagaaaggagatgagagacgaaggagttgagatgatcgatggatttgaaacggaggaagtcgagaagctgttgttgagtaggaccctcag 9677700  T
Q  524 aaccagcagcgataaggcttagcacaatttggagtgatagtggcgaaaacacgacgttcttgtctgattgtttcaacaagagatgtctggcga 616  Q
    | ||||||||||| |  || || |||| |||||| || | ||| ||||| |||||||| |||||||||| |||  | ||||||||| ||||||    
T  9677701 agccagcagcgatgatactgagaacaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggcga 9677793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 419 - 673
Target Start/End: Original strand, 9693337 - 9693594
Alignment:
Q  419 cgtccttgagtaggacggaatggagataagaggcgaaggagttaagatgattggtagatttgaagcggaggaagtcgacaagttgttgttgtgtgggacc 518  Q
    |||| ||||| |||||  || |||||| |||| | ||| |||| ||||||| | | |||||||| ||||||||||| | ||| |||||||| || |||||    
T  9693337 cgtctttgaggaggacataaaggagatgagagacaaagaagttgagatgatcgatggatttgaaacggaggaagtcaagaagctgttgttgagtaggacc 9693436  T
Q  519 ttcagaaccagcagcgataaggcttagcacaatttggagtgatagtggcgaaaacacgacgttcttgtctgattgtttcaacaagagatgtctggcgatg 618  Q
     ||||| ||| ||||||| | ||| || |||| |||||| || | ||| ||||| ||||| ||||||||||||| |||  | ||||||||| ||||||||    
T  9693437 gtcagagccaacagcgatgatgctgagaacaacttggagagacaatggtgaaaagacgacattcttgtctgattcttttgagaagagatgtttggcgatg 9693536  T
Q  619 tcgagggaaacctttgtttggttagtgattgattcttgaa---gagccattgttcttc 673  Q
      ||||||||  || | |||||| ||| ||||||| | ||   |||||||||||||||    
T  9693537 gtgagggaaaatttcgcttggttggtgcttgattcatcaaggtgagccattgttcttc 9693594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 498 - 575
Target Start/End: Original strand, 21465978 - 21466055
Alignment:
Q  498 aagttgttgttgtgtgggaccttcagaaccagcagcgataaggcttagcacaatttggagtgatagtggcgaaaacac 575  Q
    ||||||||||||||| ||||||||||| ||||||||||| | ||| | |||||| |||||||||| ||||||||||||    
T  21465978 aagttgttgttgtgtcggaccttcagagccagcagcgatgatgctcaacacaatgtggagtgataatggcgaaaacac 21466055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 348 - 408
Target Start/End: Original strand, 9677516 - 9677576
Alignment:
Q  348 gaaggaaggttgaagagaaagggtttgttcaacccatacaccatcgacaaaagagaggcga 408  Q
    |||||||||||||||||||||| |||  || ||||||||||||| | | ||||||||||||    
T  9677516 gaaggaaggttgaagagaaaggtttttctccacccatacaccattggcgaaagagaggcga 9677576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 9693254 - 9693314
Alignment:
Q  345 tttgaaggaaggttgaagagaaagggtttgttcaacccatacaccatcgacaaaagagagg 405  Q
    |||||||||||||||||||||||||||||  || ||||| ||||||| | | |||||||||    
T  9693254 tttgaaggaaggttgaagagaaagggttttctctacccacacaccattggcgaaagagagg 9693314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 1e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 455 - 609
Target Start/End: Complemental strand, 35160637 - 35160483
Alignment:
Q  455 aggagttaagatgattggtagatttgaagcggaggaagtcgacaagttgttgttgtgtgggaccttcagaaccagcagcgataaggcttagcacaatttg 554  Q
    ||||||| |||||||  || |||||||| ||||||||||| | ||| ||||||||||| | ||| ||||| ||||||| ||| | ||| ||||||| |||    
T  35160637 aggagttgagatgatcagtggatttgaaacggaggaagtcaagaagctgttgttgtgttgaaccctcagagccagcagtgattatgctgagcacaacttg 35160538  T
Q  555 gagtgatagtggcgaaaacacgacgttcttgtctgattgtttcaacaagagatgt 609  Q
    ||| || | |||||||||||||| |||||| ||||||| |||  | |||||||||    
T  35160537 gagagacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgt 35160483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 475 - 536
Target Start/End: Complemental strand, 15555168 - 15555107
Alignment:
Q  475 gatttgaagcggaggaagtcgacaagttgttgttgtgtgggaccttcagaaccagcagcgat 536  Q
    ||||| |||||||||||||||| ||||||||| ||||||| ||| ||||| |||||||||||    
T  15555168 gatttaaagcggaggaagtcgagaagttgttgctgtgtggaaccctcagagccagcagcgat 15555107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 35160761 - 35160696
Alignment:
Q  340 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccatcgacaaaagagagg 405  Q
    |||||||||||||||| ||||||||||||||||| ||| | ||| ||||| ||||| |||||||||    
T  35160761 atttgtttgaaggaagattgaagagaaagggttttttccagccaaacaccgtcgacgaaagagagg 35160696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 465 - 575
Target Start/End: Complemental strand, 37147521 - 37147411
Alignment:
Q  465 atgattggtagatttgaagcggaggaagtcgacaagttgttgttgtgtgggaccttcagaaccagcagcgataaggcttagcacaatttggagtgatagt 564  Q
    ||||||| | ||||| |||  ||||||||||| || |||||||||||||||||| |  || |||||||||||||  ||||| |||| |||||| || |      
T  37147521 atgattgatggatttaaagtcgaggaagtcgagaatttgttgttgtgtgggacccttggagccagcagcgataatacttagaacaacttggagcgacaag 37147422  T
Q  565 ggcgaaaacac 575  Q
    |||||||||||    
T  37147421 ggcgaaaacac 37147411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 536
Target Start/End: Complemental strand, 35154367 - 35154165
Alignment:
Q  343 tgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccatcgacaaaagagaggc---gaccat------gagcaacgtccttgagtagga 433  Q
    |||||||||||||||||| ||||||||||||  || | ||| |||| || ||||||| ||||||   ||||||      ||| | |||| ||||  | ||    
T  35154367 tgtttgaaggaaggttgaggagaaagggttttgtccagccacacactattgacaaaaaagaggcgaggaccatgagaaggagtagcgtctttgaagatga 35154268  T
Q  434 cggaatggagataagaggcgaaggagttaagatgattggtagatttgaagcggaggaagtcgacaagttgttgttgtgtgggaccttcagaaccagcagc 533  Q
    |||||  ||| | |||| |||||||||| ||||||| ||  ||||||||  ||||||||| || ||| |||||| |||||| ||| ||||| ||||||||    
T  35154267 cggaaatgagttgagagacgaaggagttgagatgataggcggatttgaattggaggaagttgagaagctgttgtcgtgtggaaccgtcagagccagcagc 35154168  T
Q  534 gat 536  Q
    |||    
T  35154167 gat 35154165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 391
Target Start/End: Complemental strand, 15555304 - 15555261
Alignment:
Q  348 gaaggaaggttgaagagaaagggtttgttcaacccatacaccat 391  Q
    |||||||| |||||||||||||||||| |||||||| |||||||    
T  15555304 gaaggaagtttgaagagaaagggtttgctcaacccacacaccat 15555261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 391
Target Start/End: Complemental strand, 37147654 - 37147603
Alignment:
Q  340 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccat 391  Q
    ||||||||||||||| ||||||||||||| | |||||||| ||| |||||||    
T  37147654 atttgtttgaaggaatgttgaagagaaagtgattgttcaatccacacaccat 37147603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 485 - 592
Target Start/End: Original strand, 16967890 - 16967997
Alignment:
Q  485 ggaggaagtcgacaagttgttgttgtgtgggaccttcagaaccagcagcgataaggcttagcacaatttggagtgatagtggcgaaaacacgacgttctt 584  Q
    ||||||| | || |||||||||||| |||||||| |||||||||  |||||| | ||||| ||||| ||||||||| ||||| |||||||||| ||| ||    
T  16967890 ggaggaatttgaaaagttgttgttgagtgggaccctcagaaccaaaagcgattatgcttaacacaacttggagtgagagtggtgaaaacacgatgttgtt 16967989  T
Q  585 gtctgatt 592  Q
    ||| ||||    
T  16967990 gtccgatt 16967997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 17734756 - 17734707
Alignment:
Q  342 ttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccat 391  Q
    ||||||||||||||||||||||| ||| | |||||||||||| |||||||    
T  17734756 ttgtttgaaggaaggttgaagaggaagtgattgttcaacccacacaccat 17734707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 16720772 - 16720723
Alignment:
Q  342 ttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccat 391  Q
    ||||||||||||||||||||||| ||  || ||||||||||| |||||||    
T  16720772 ttgtttgaaggaaggttgaagaggaattgtctgttcaacccacacaccat 16720723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 16729645 - 16729596
Alignment:
Q  342 ttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccat 391  Q
    |||||| |||||||||||||||| ||| | |||||||||||| |||||||    
T  16729645 ttgtttaaaggaaggttgaagaggaagtgattgttcaacccacacaccat 16729596  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 17697786 - 17697737
Alignment:
Q  342 ttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccat 391  Q
    ||||||||||||||||||||||| ||  || ||||||||||| |||||||    
T  17697786 ttgtttgaaggaaggttgaagaggaattgtctgttcaacccacacaccat 17697737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 17706717 - 17706668
Alignment:
Q  342 ttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccat 391  Q
    |||||| |||||||||||||||| ||| | |||||||||||| |||||||    
T  17706717 ttgtttaaaggaaggttgaagaggaagtgattgttcaacccacacaccat 17706668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 17716705 - 17716656
Alignment:
Q  342 ttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccat 391  Q
    |||||| |||||||||||||||| ||| | |||||||||||| |||||||    
T  17716705 ttgtttaaaggaaggttgaagaggaagtgattgttcaacccacacaccat 17716656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 17743996 - 17743947
Alignment:
Q  342 ttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccat 391  Q
    ||||||||||||||||||||||| ||| | || ||||||||| |||||||    
T  17743996 ttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacaccat 17743947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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