View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447-Insertion-18 (Length: 1048)
Name: NF0447-Insertion-18
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447-Insertion-18 |
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Alignment Details
Target: chr7 (Bit Score: 511; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 8 - 559
Target Start/End: Complemental strand, 48172803 - 48172252
Alignment:
| Q |
8 |
catctagtactgcaaaaggattgtggtacttgcacgacaaggcaaatccttcaattatatacagggacttgaaatcgtcgaacattttgcttgataagga |
107 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48172803 |
catctaatactgcaaaaggattgtggtacttgcacgacaaggcaaatccttcaattatatacagggacttgaaatcgtcgaacattttgcttgataagga |
48172704 |
T |
|
| Q |
108 |
tcttaatgcaaaactatctgattacggacttgccaaacttgctggtaaagataaggctaacattgtgcctacaagagtcatgggtacttatggttatagc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48172703 |
tcttaatgcaaaactatctgattacggacttgccaaacttgctggtaaagataaggctaacattgtgcctacaagagtcatgggtacttatggttatagc |
48172604 |
T |
|
| Q |
208 |
gcccctgagtatgtaagaacaggtaacctcaccttgaaatcagatgtgtacagttttggagttgtcttgctagagctcattactggaagacgagccgttg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48172603 |
gcccctgagtatgtaagaacaggtaacctcaccttgaaatcagatgtgtacagttttggagttgtcttgctagagctcattactggaagacgagccgttg |
48172504 |
T |
|
| Q |
308 |
acaccacaagatcgcacgacgagcaaaatctagtttcatgggtacacaaactatagcaatcttttttcaatattactttttgtcctatataaaataaaat |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
48172503 |
acaccacaagatcgcacgacgagcaaaatctagtttcatgggtacacaaactatagcaatctcttttcaacattactttttgtcctatataaaataaaat |
48172404 |
T |
|
| Q |
408 |
acaatatgagatgattatggggnnnnnnngtgttttaactctccgattccaacggtaagggcccttggtaatctagagttcagtcggaactctggttaat |
507 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48172403 |
acaatatgagatgattatggagtttttttgtgttttaactctccgattccaacggtaagggcctttggtaatctagagttcagtcggaactctggttaat |
48172304 |
T |
|
| Q |
508 |
tattgattcaaccaggattctaacttgtgattcccgaatgatttgcccttaa |
559 |
Q |
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| T |
48172303 |
tattgattcaaccaggattctaacttgtgattcccgaatgatttgcccttaa |
48172252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 594 - 1048
Target Start/End: Complemental strand, 48172245 - 48171788
Alignment:
| Q |
594 |
attttgggagctttcctaagtgcaatttctccagtatgatataaactaatattttaagcaatatctttgattctcttgtatctgttttgataattttata |
693 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48172245 |
attttgggagctttcctaagtgcaatttctccagtatgatataaactaatattttaagcaatatctttgattctcttgtatctgttttgataattttata |
48172146 |
T |
|
| Q |
694 |
cttgtaactgctgagcaggcacaaccaatatttagagatcctaaaagatatggagatatggcagatccaaatctgaataaaaattatccagaaaaggatc |
793 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48172145 |
cttgtaactgctgagcaggcacaaccaatatttagagatcctaaaagatatggagatatggcagatccaaatctgaataaaaattatccagaaaaggatc |
48172046 |
T |
|
| Q |
794 |
tgaatcaagttgttgcaattgcagccatgtgcttacaagaggaatcagcagcgcgtcctttgatgagtgatgttgtaactgctttgagttttctttccac |
893 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48172045 |
tgaatcaagttgttgcaattgcagccatgtgcttacaagaggaatcagcagcgcgtcctttgatgagtgatgttgtaactgctttgagttttctttccac |
48171946 |
T |
|
| Q |
894 |
ttctcctcctccagaagctgttcctgcacctcttccacctcccaattgtacctctcaaaaggagtgt--gcactgccgatgaa--ggagagcgaagatga |
989 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||| |
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| T |
48171945 |
ttctcctcctccagaagctgttcctgcacctcttccacctcccaattgtacctcccaaaa-gagtgttgccactgccgatgaaagtgagagcgaagatga |
48171847 |
T |
|
| Q |
990 |
t-atgacagccatagttcttgatgaagagcgttttgttcatgaggataaaaagtctatta |
1048 |
Q |
| |
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| T |
48171846 |
taatgacagccatagttc-cgatgaagagcgttctgttcatgaggataaaaagtctatta |
48171788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 296
Target Start/End: Complemental strand, 21139438 - 21139321
Alignment:
| Q |
179 |
caagagtcatgggtacttatggttatagcgcccctgagtatgtaagaacaggtaacctcaccttgaaatcagatgtgtacagttttggagttgtcttgct |
278 |
Q |
| |
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||||||| ||||| |||||||| ||| | || ||||||||| |||||||||| | ||||| ||||||||||| | ||||||||||| ||||| ||||| |
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| T |
21139438 |
caagagtaatggggacttatggatattgtgcacctgagtatcaaagaacaggtcaactcactgtgaaatcagatatatacagttttggtgttgttttgct |
21139339 |
T |
|
| Q |
279 |
agagctcattactggaag |
296 |
Q |
| |
|
|| | ||||||||||| |
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| T |
21139338 |
tgaattgattactggaag |
21139321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 8e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 747 - 893
Target Start/End: Original strand, 35288401 - 35288547
Alignment:
| Q |
747 |
agatatggcagatccaaatctgaataaaaattatccagaaaaggatctgaatcaagttgttgcaattgcagccatgtgcttacaagaggaatcagcagcg |
846 |
Q |
| |
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|||||||||||||||| ||| || ||| | | |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||| ||| |
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| T |
35288401 |
agatatggcagatccacttctcaacaaacaattcccagaaaaggatcttaatcaagctgttgcaatagcagccatgtgcttacaagaggaaccagaagct |
35288500 |
T |
|
| Q |
847 |
cgtcctttgatgagtgatgttgtaactgctttgagttttctttccac |
893 |
Q |
| |
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||||||||||| | || ||||| || ||| |||||||||||||||| |
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| T |
35288501 |
cgtcctttgatcggcgacgttgtgaccgctctgagttttctttccac |
35288547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 106 - 351
Target Start/End: Original strand, 35287744 - 35287989
Alignment:
| Q |
106 |
gatcttaatgcaaaactatctgattacggacttgccaaacttgctggtaaagataaggctaacattgtgcctacaagagtcatgggtacttatggttata |
205 |
Q |
| |
|
||||||||||||||||||| ||||| |||| | | |||| || ||||| ||| ||| |||| || ||| ||||||| ||||||||||| |||||| |
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| T |
35287744 |
gatcttaatgcaaaactatatgatttcggaatggtcaaattttctggtggagacaagatgaacaatgcacctccaagagttatgggtacttacggttatt |
35287843 |
T |
|
| Q |
206 |
gcgcccctgagtatgtaagaacaggtaacctcaccttgaaatcagatgtgtacagttttggagttgtcttgctagagctcattactggaagacgagccgt |
305 |
Q |
| |
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| || ||||| ||| |||||||||| | || |||||||||||||||| ||||||||||||||||||||||| || || || ||||| |||| ||| | |
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| T |
35287844 |
gtgctcctgaatatacaagaacaggtcaattctccttgaaatcagatgtatacagttttggagttgtcttgcttgaacttatcactgggcgacgtgccat |
35287943 |
T |
|
| Q |
306 |
tgacaccacaagatcgcacgacgagcaaaatctagtttcatgggta |
351 |
Q |
| |
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||||||| ||| | |||| |||||||| || |||||||||||| |
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|
| T |
35287944 |
tgacacctcaaagcctaacgaagagcaaaaccttgtttcatgggta |
35287989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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