View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0447-Insertion-2 (Length: 664)
Name: NF0447-Insertion-2
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447-Insertion-2 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 15 - 664
Target Start/End: Original strand, 47826330 - 47826974
Alignment:
| Q |
15 |
catcacatctctatagtcttccacatcattgctctaaaaccctgtcttaatttcactctttgatttctcgagttcaattgcttacacaatttgatttaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47826330 |
catcacatctctatagtcttccacatcattgctctaaaaccctgtcttaatttcactctttgatttctcgagttcaattgcttacacaatttgatttaat |
47826429 |
T |
|
| Q |
115 |
cattgtgcaaatttgtttgtatttggtattatacattaattagaaaacatgttgtctaggaaggctagtgaagactctcatggccaagactcttcttact |
214 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47826430 |
cattgtgcaaatttg----tatttggtataatacattaattagaaaacatgttgtctaggaaggctagtgaagactctcatggccaagactcttcttact |
47826525 |
T |
|
| Q |
215 |
tcctaggatggcaagagtacgagaagaatccctatcacccaattcataatcccacgggaatcattcagatgggacttgcggagaatcaggtaaattagtt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47826526 |
tcctaggatggcaagagtacgagaagaatccctatcacccaattcataatcccacgggaatcattcagatgggacttgcggagaatcaggtaaattagtt |
47826625 |
T |
|
| Q |
315 |
tgtttattattataactcaagtatatttataatgaatccatgctgctacaagtatatatatagatagagattgaaaaaatgaaactattaagatgtcccg |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47826626 |
tgtttattattataactcaagtatatttataatgactccatgctgctacaagtatatatatagatagagattgaaaaaatgaaactattaagatgtcccg |
47826725 |
T |
|
| Q |
415 |
tacgggggacacaaaaggatagtatgtca---annnnnnnnncttcttcaccaaagttattattatatgctaggactaaacatttaaaattatcattttc |
511 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47826726 |
tacgggggacacaaaaggatagtatgtcactttttttttttttttcttcaccaaagttattattatatgctaggactaaacatttaaaattatcattttc |
47826825 |
T |
|
| Q |
512 |
tcttatatctatctggtccctaataaactatcaaaatactcagtgagctaacattatgttaaccatttacacaataatactagtaatagttcagagtata |
611 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47826826 |
tctta----tatctggtccctaataaactatcaaaatactcagtgagctaacattatgttaaccatttacacaataataccagtaatagttcagagtata |
47826921 |
T |
|
| Q |
612 |
ttacttattgatttaatgctaactttatgttttagtttgttagttcatgctaa |
664 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47826922 |
ttacttattgatttaatgctaactttatgttttagtttgttagttcatgctaa |
47826974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 40207046 - 40207099
Alignment:
| Q |
192 |
tcatggccaagactcttcttacttcctaggatggcaagagtacgagaagaatcc |
245 |
Q |
| |
|
||||||||||||||| || |||||| |||||||| |||| |||||||| ||||| |
|
|
| T |
40207046 |
tcatggccaagactcctcatacttcttaggatgggaagaatacgagaaaaatcc |
40207099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University