View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0447-Insertion-23 (Length: 397)

Name: NF0447-Insertion-23
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0447-Insertion-23
NF0447-Insertion-23
[»] chr3 (3 HSPs)
chr3 (11-325)||(25516707-25517018)
chr3 (38-184)||(21156297-21156439)
chr3 (21-77)||(29100130-29100186)
[»] chr4 (5 HSPs)
chr4 (30-149)||(37781762-37781880)
chr4 (30-148)||(873596-873713)
chr4 (21-120)||(4956113-4956213)
chr4 (75-149)||(54867082-54867157)
chr4 (88-151)||(3991920-3991984)
[»] chr2 (12 HSPs)
chr2 (9-183)||(16388529-16388702)
chr2 (23-184)||(2869765-2869927)
chr2 (21-185)||(3277869-3278029)
chr2 (36-151)||(28770859-28770974)
chr2 (65-143)||(5699691-5699769)
chr2 (30-151)||(18674480-18674600)
chr2 (88-156)||(8390286-8390354)
chr2 (97-187)||(16388312-16388399)
chr2 (95-151)||(39482828-39482884)
chr2 (72-145)||(20522124-20522196)
chr2 (88-149)||(23078608-23078669)
chr2 (88-199)||(13569181-13569289)
[»] scaffold0076 (1 HSPs)
scaffold0076 (21-127)||(16058-16165)
[»] chr5 (4 HSPs)
chr5 (38-184)||(5611010-5611152)
chr5 (55-181)||(30899728-30899854)
chr5 (70-199)||(34842457-34842582)
chr5 (71-182)||(28537489-28537604)
[»] chr6 (7 HSPs)
chr6 (21-127)||(33721629-33721735)
chr6 (53-241)||(30519123-30519307)
chr6 (69-151)||(28301082-28301164)
chr6 (69-151)||(28510909-28510991)
chr6 (21-149)||(9036160-9036286)
chr6 (88-149)||(22963599-22963660)
chr6 (88-149)||(23824733-23824794)
[»] chr7 (4 HSPs)
chr7 (23-184)||(28617297-28617457)
chr7 (88-151)||(46516447-46516510)
chr7 (75-151)||(2647820-2647896)
chr7 (23-91)||(27984475-27984543)
[»] chr1 (4 HSPs)
chr1 (75-149)||(29651710-29651784)
chr1 (43-151)||(48382575-48382683)
chr1 (21-143)||(35109606-35109727)
chr1 (65-132)||(32737110-32737177)
[»] scaffold0148 (1 HSPs)
scaffold0148 (23-149)||(10628-10754)
[»] chr8 (3 HSPs)
chr8 (72-162)||(6813567-6813658)
chr8 (89-146)||(5990699-5990756)
chr8 (63-116)||(34477330-34477383)
[»] scaffold0006 (1 HSPs)
scaffold0006 (75-149)||(2392-2465)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 25517018 - 25516707
Alignment:
Q  11 agttggtcatttttggactgaactgggtaaataatattggtatgttgttttccctctcttctttcttatccttgttactttgaatatgcttgtggtgttg 110  Q
    ||||| |||||||| ||  |||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  25517018 agttgatcatttttagatcgaactgggtaaacactattggtgtgttgttttccctctcttctttcttatccttgttactttaaatatgtttgtggtgttg 25516919  T
Q  111 tttcacacttcgatctaagtctattttttgttgttgttgttatttgagactactttacttattgattactactttctctactcaacacaataaagattta 210  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25516918 tttcacacttcgatctaagtctattttttgttgttgtt---atttgagactactttacttattgattactactttctttactcaacacaataaagattta 25516822  T
Q  211 ttggtataattacctgttccaattcacaacaaattctattaataatgtagttgtagtagtttgtaaagagaaaaatgaaagtatatacatctatatctgc 310  Q
    ||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||    
T  25516821 ttggtatgattaccagttcaaattcacaacaaattctattaataatgtagttgtagtagtttgtaaagagacaaatgaaagtatataaatgtatatctgc 25516722  T
Q  311 tattcgctctgctgg 325  Q
    ||||||||| |||||    
T  25516721 tattcgctccgctgg 25516707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 184
Target Start/End: Complemental strand, 21156439 - 21156297
Alignment:
Q  38 taaataatattggtatgttgttttccctctcttctttcttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaagtctatttt 137  Q
    |||| ||||||||| ||||||||||  || ||||||||||||| ||||| |||||||||| ||| |||||||||||||| ||| |||||| ||   || |    
T  21156439 taaacaatattggtgtgttgttttct-tcccttctttcttatctttgttgctttgaatattcttatggtgttgtttcactcttagatctaggt---ttgt 21156344  T
Q  138 ttgttgttgttgttatttgagactactttacttattgattactactt 184  Q
    ||||| || |||||  || ||||||||||||| ||||||||||||||    
T  21156343 ttgttatttttgttgcttaagactactttactcattgattactactt 21156297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 29100186 - 29100130
Alignment:
Q  21 ttttggactgaactgggtaaataatattggtatgttgttttccctctcttctttctt 77  Q
    |||||||| |||||||||||| ||||||||| ||||||||||  |||||||||||||    
T  29100186 ttttggaccgaactgggtaaacaatattggtgtgttgttttctttctcttctttctt 29100130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 37781880 - 37781762
Alignment:
Q  30 gaactgggtaaataatattggtatgttgttttccctctcttctttcttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaag 129  Q
    |||||||||||| ||||||||| ||||||||||  ||| || ||||||||| ||||| ||||||||||||||||||||||| ||||||||| |||||| |    
T  37781880 gaactgggtaaacaatattggtttgttgttttct-tctattatttcttatctttgttgctttgaatatgcttgtggtgttgcttcacacttagatctagg 37781782  T
Q  130 tctattttttgttgttgttg 149  Q
    ||||||| ||| ||||||||    
T  37781781 tctatttgttgatgttgttg 37781762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 873596 - 873713
Alignment:
Q  30 gaactgggtaaataatattggtatgttgttttccctctcttctttcttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaag 129  Q
    |||||| ||||||||||||||| |||||||| || | |||| ||||||||| | |||  |||||||||| ||||||||||||||||||||| ||| ||||    
T  873596 gaactgagtaaataatattggtgtgttgttt-ccttatcttgtttcttatcttcgttgttttgaatatgtttgtggtgttgtttcacacttagatttaag 873694  T
Q  130 tctattttttgttgttgtt 148  Q
    ||  ||| |||||||||||    
T  873695 tcagtttgttgttgttgtt 873713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 4956213 - 4956113
Alignment:
Q  21 ttttggactgaactgggtaaataatattggtatgttgttttccctctcttctttctt-atccttgttactttgaatatgcttgtggtgttgtttcacact 119  Q
    |||||||||||||||| |||| ||||||| | |||| |||||  |||||| ||| || |||  |||| |||||| |||| ||||||||||| ||||||||    
T  4956213 ttttggactgaactggataaacaatattgatttgtttttttctttctcttgtttttttatctgtgttgctttgattatgtttgtggtgttgcttcacact 4956114  T
Q  120 t 120  Q
    |    
T  4956113 t 4956113  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 149
Target Start/End: Complemental strand, 54867157 - 54867082
Alignment:
Q  75 cttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaagtct-attttttgttgttgttg 149  Q
    |||||| || ||||||||| |||||||||||||||| |  |||||| |||||| ||||  ||||||||||||||||    
T  54867157 cttatctttattactttgattatgcttgtggtgttgctctacacttagatctatgtctgtttttttgttgttgttg 54867082  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 3991984 - 3991920
Alignment:
Q  88 ctttgaatatgcttgtggtgttgtttcacacttcgatctaag-tctattttttgttgttgttgtt 151  Q
    |||| ||||||||||| |||||| ||||||||| |||||||| | | ||| ||||||||||||||    
T  3991984 ctttaaatatgcttgtagtgttgcttcacacttagatctaagctttgtttgttgttgttgttgtt 3991920  T

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Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 16388529 - 16388702
Alignment:
Q  9 agagttggtcatttttggactgaactgggtaaataatattggtatgttgttttccctctcttctttcttatccttgttactttgaatatgcttgtggtgt 108  Q
    ||||| ||||||||||||||  ||||||||||| ||||||||| |||||||||||  || |||| ||||||| || || ||||| |||||||| | ||||    
T  16388529 agagtaggtcatttttggaccaaactgggtaaacaatattggtgtgttgttttcctcct-ttctctcttatctttattgctttggatatgcttatagtgt 16388627  T
Q  109 tgtttcacacttcgatctaagtctattttttgttgttgttgttatttgagactactttacttattgattactact 183  Q
    || ||||||| |  ||||| |||| ||| ||||||||| || |  |||||||||||||||| |||||||||||||    
T  16388628 tgcttcacacatacatctaggtctgtttgttgttgttgctgctgcttgagactactttactcattgattactact 16388702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 2869765 - 2869927
Alignment:
Q  23 ttggactgaactgggtaaataatattggtatgttgttttccctctcttcttt-cttatccttgttactttgaatatgcttgtggtgttgtttcacacttc 121  Q
    |||||| |||||||||||| ||||||||| ||||  ||  | ||  || ||| |||||| ||||| |||||||||||||| |||||||| |  ||||||     
T  2869765 ttggaccgaactgggtaaacaatattggtgtgtttgttctcttcctttatttgcttatctttgttgctttgaatatgcttatggtgttgctctacactta 2869864  T
Q  122 gatctaagtctattttttgttgttgttgttatttgagactactttacttattgattactactt 184  Q
    ||| || |||||||| |||||||||||||| |||||  |||||||||| |||||| |||||||    
T  2869865 gatttaggtctatttgttgttgttgttgttgtttgatgctactttactcattgatcactactt 2869927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 3278029 - 3277869
Alignment:
Q  21 ttttggactgaactgggtaaataatattggtatgttgttttccctctcttctttcttatccttgttactttgaatatgcttgtggtgttgtttcacactt 120  Q
    |||||||| ||| || ||||| ||| ||| | |||| ||||||||||||| ||||||||| || || ||||||||||| |||| |||||| |||||||||    
T  3278029 ttttggacggaaatgagtaaacaatgttgatgtgtt-ttttccctctcttatttcttatcttttttgctttgaatatgtttgtagtgttgcttcacactt 3277931  T
Q  121 cgatctaagtctattttttgttgttgttgttatttgagactactttacttattgattactacttt 185  Q
     ||||||  |||||||   ||||||||||||  ||| || |||||| || |||||||||||||||    
T  3277930 agatctagatctattt---gttgttgttgtttcttgtgattactttgctaattgattactacttt 3277869  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 28770859 - 28770974
Alignment:
Q  36 ggtaaataatattggtatgttgttttccctctcttctttcttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaagtctatt 135  Q
    |||||| ||||||||| | |||||| |  |||||||||| ||||  || || |||||| |||||||||||||||| ||||||||| |||||| |||||||    
T  28770859 ggtaaaaaatattggtgtcttgtttcctttctcttctttattatattttttgctttgattatgcttgtggtgttgcttcacacttagatctaggtctatt 28770958  T
Q  136 ttttgttgttgttgtt 151  Q
    | |||| |||||||||    
T  28770959 tgttgtagttgttgtt 28770974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 5699769 - 5699691
Alignment:
Q  65 tctcttctttcttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaagtctattttttgttg 143  Q
    |||||| | ||||||| ||| | ||||||||| ||||||||||||| || |||||| |||||| |||||||| ||||||    
T  5699769 tctcttttatcttatcgttgctgctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttg 5699691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 18674480 - 18674600
Alignment:
Q  30 gaactgggtaaataatattggtatgttgttttccctctcttctttcttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaag 129  Q
    ||||||| |||| ||||||| | | ||||||||  |||||| ||||||||| |||||  || ||||||||| ||||||||  |||||||||  ||||| |    
T  18674480 gaactggataaacaatattgatgtcttgttttctttctctt-tttcttatctttgttgtttcgaatatgctcgtggtgttacttcacacttaaatctagg 18674578  T
Q  130 tctattttttgttgttgttgtt 151  Q
    ||| ||| || |||||||||||    
T  18674579 tctgtttgttattgttgttgtt 18674600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 8390286 - 8390354
Alignment:
Q  88 ctttgaatatgcttgtggtgttgtttcacacttcgatctaagtctattttttgttgttgttgttatttg 156  Q
    |||||| |||||||||||||||| |  |||||| |||||| ||||  ||||||||||||||||| ||||    
T  8390286 ctttgattatgcttgtggtgttgctctacacttagatctaggtctggtttttgttgttgttgttgtttg 8390354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 16388399 - 16388312
Alignment:
Q  97 tgcttgtggtgttgtttcacacttcgatctaagtctattttttgttgttgttgttatttgagactactttacttattgattactactttct 187  Q
    ||||||| ||||||||||||||||  || || ||   || ||||||||||||| |  |||||||||||||| | |||||||||||||||||    
T  16388399 tgcttgtagtgttgtttcacacttatatatatgt---ttgtttgttgttgttgctgcttgagactactttattcattgattactactttct 16388312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 39482884 - 39482828
Alignment:
Q  95 tatgcttgtggtgttgtttcacacttcgatctaagtctattttttgttgttgttgtt 151  Q
    ||||||||||||||||||  |||||| ||| || |||| ||||||||||||||||||    
T  39482884 tatgcttgtggtgttgttctacacttagatttaggtctgttttttgttgttgttgtt 39482828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 20522196 - 20522124
Alignment:
Q  72 tttcttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaagtctattttttgttgtt 145  Q
    ||||||||| || || |||||| |||||||||||||||| |  |||||| |||||| |||| ||||||||||||    
T  20522196 tttcttatctttattgctttgattatgcttgtggtgttgctctacacttagatctatgtct-ttttttgttgtt 20522124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 23078608 - 23078669
Alignment:
Q  88 ctttgaatatgcttgtggtgttgtttcacacttcgatctaagtctattttttgttgttgttg 149  Q
    |||||| |||||||||||||||| |  |||||| |||||| || | ||||||||||||||||    
T  23078608 ctttgattatgcttgtggtgttgctctacacttagatctaggtatgttttttgttgttgttg 23078669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 199
Target Start/End: Complemental strand, 13569289 - 13569181
Alignment:
Q  88 ctttgaatatgcttgtggtgttgtttcacacttcgatctaagtctattttttgttgttgttgttatttgagactactttacttattgattactactttct 187  Q
    |||||| |||||||||||||||  |  | |||| |||||||| || |||||||||||||||||  || ||||| |||||||  ||||||||| |||| ||    
T  13569289 ctttgattatgcttgtggtgtttctctatacttagatctaagcctgttttttgttgttgttgt--ttggagac-actttacacattgattaccacttcct 13569193  T
Q  188 ctactcaacaca 199  Q
     ||||| |||||    
T  13569192 ttactccacaca 13569181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 16058 - 16165
Alignment:
Q  21 ttttggactgaactgggtaaataatattggtatgttgttttccctctcttctttctt-atccttgttactttgaatatgcttgtggtgttgtttcacact 119  Q
    |||||||| |||||||||||||||||||||| ||||||||| | ||  |||| |||| ||| ||||| ||||||||||| ||||||||||||||||||||    
T  16058 ttttggaccgaactgggtaaataatattggtgtgttgtttttcttcctttctctctttatctttgttgctttgaatatgtttgtggtgttgtttcacact 16157  T
Q  120 tcgatcta 127  Q
    | ||||||    
T  16158 tagatcta 16165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 184
Target Start/End: Complemental strand, 5611152 - 5611010
Alignment:
Q  38 taaataatattggtatgttgttttccctctcttctttcttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaagtctatttt 137  Q
    |||| ||||||||| ||||||||||  || ||||||||||||| ||||| |||||||||| ||| |||||||||||||| ||| |||||| ||   || |    
T  5611152 taaacaatattggtgtgttgttttct-tcccttctttcttatctttgttgctttgaatattcttatggtgttgtttcactcttagatctaggt---ttgt 5611057  T
Q  138 ttgttgttgttgttatttgagactactttacttattgattactactt 184  Q
    ||||| || |||||  || ||||||||||||| ||||||||||||||    
T  5611056 ttgttatttttgttgcttaagactactttactcattgattactactt 5611010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 181
Target Start/End: Complemental strand, 30899854 - 30899728
Alignment:
Q  55 ttgttttccctctcttctttcttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaagtctattttttgttgttgttgttatt 154  Q
    ||||||| | ||||||||||  |||| |||||  ||||  ||| |||||||||||| || |||||| |||||| |||||| | ||||||||||||||  |    
T  30899854 ttgtttttcttctcttcttttgtatctttgttgttttggttatacttgtggtgttgcttaacactttgatctaggtctatgtgttgttgttgttgttgct 30899755  T
Q  155 tgagactactttacttattgattacta 181  Q
    |||| ||||||| || |||||||||||    
T  30899754 tgaggctactttgctcattgattacta 30899728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 34842582 - 34842457
Alignment:
Q  70 tctttcttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaagtctattttttgttgttgttgttatttgagactactttact 169  Q
    ||||||||||| ||||| ||| | ||||||||||||||||| ||||||||| |||||| ||   || ||| ||||||||| |  ||||| |||||||||     
T  34842582 tctttcttatctttgttgcttcggatatgcttgtggtgttgcttcacacttagatctaggt---ttgtttattgttgttgctgcttgaggctactttac- 34842487  T
Q  170 tattgattactactttctctactcaacaca 199  Q
    | ||||||||||||| || ||||| |||||    
T  34842486 tcttgattactacttcctttactccacaca 34842457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 28537604 - 28537489
Alignment:
Q  71 ctttcttatccttgtt-actttgaatatgcttgtggtgttgtttcacacttcgatctaagtctatttttt-gttgttgttgttat---ttgagactactt 165  Q
    |||||||||| ||||| | ||||| |||| |||||||| ||||| |||||| ||| || |||| |||||| |||||||||||| |   ||||||||||||    
T  28537604 ctttcttatctttgttgattttgattatgtttgtggtgctgttttacacttagat-tatgtctgtttttttgttgttgttgttgttgcttgagactactt 28537506  T
Q  166 tacttattgattactac 182  Q
    |||| ||||||||||||    
T  28537505 tactcattgattactac 28537489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 33721629 - 33721735
Alignment:
Q  21 ttttggactgaactgggtaaataatattggtatgttgttttccctctcttctttcttatccttgttactttgaatatgcttgtggtgttgtttcacactt 120  Q
    ||||||||| |||||| ||| |||||||||| ||||||||| | ||  |||| ||||||| ||||| ||||||||||| |||||||| ||||||||||||    
T  33721629 ttttggactaaactggataagtaatattggtgtgttgtttttcttcctttctctcttatctttgttgctttgaatatgtttgtggtgatgtttcacactt 33721728  T
Q  121 cgatcta 127  Q
     ||||||    
T  33721729 agatcta 33721735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 30519123 - 30519307
Alignment:
Q  53 tgttgttttccctctcttctttcttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaagtctattttttgttgttgttgtta 152  Q
    ||||||||||  |||||| ||||||||| ||||| |||| |||||| || |||||||| |||||||||  |||||| | | ||| ||||||||||||       
T  30519123 tgttgttttctttctcttatttcttatctttgttgctttaaatatgtttatggtgttgcttcacacttaaatctaaatatgtttgttgttgttgttg--- 30519219  T
Q  153 tttgagactactttacttattgattactactttctctactcaacacaataaagatttattggtataattacctgttccaattcacaaca 241  Q
    |||||||||| |||  | ||||||||||| ||||| | ||| ||||| | || |||||||||||| ||||  ||||| | |||||||||    
T  30519220 tttgagactattttgatcattgattactattttctttgctccacacatttaa-atttattggtatgattatttgttcaatttcacaaca 30519307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 28301082 - 28301164
Alignment:
Q  69 ttctttcttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaagtctattttttgttgttgttgtt 151  Q
    ||||||||||||  |||| ||||||||||| |||| |||||| |||||||||||||||| || | ||| ||||| ||||||||    
T  28301082 ttctttcttatctctgtttctttgaatatgtttgtagtgttgcttcacacttcgatctaggtatgtttattgttcttgttgtt 28301164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 28510991 - 28510909
Alignment:
Q  69 ttctttcttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaagtctattttttgttgttgttgtt 151  Q
    ||||||||||||  |||| ||||||||||| |||| |||||| |||||||||||||||| || | ||| ||||| ||||||||    
T  28510991 ttctttcttatctctgtttctttgaatatgtttgtagtgttgcttcacacttcgatctaggtatgtttattgttcttgttgtt 28510909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 9036286 - 9036160
Alignment:
Q  21 ttttggactgaactgggtaaataatattggtatgttgttttccctctcttctttcttatccttgttactttgaatatgcttgtggtgttgtttcacactt 120  Q
    |||||||| ||||||| ||||||||||| || ||||||||||  |||||||||||||||| |||||  ||||| |||  ||||||  ||| |||||||||    
T  9036286 ttttggaccgaactgg-taaataatattagtgtgttgttttctttctcttctttcttatctttgttgttttgattataattgtgg-attgcttcacactt 9036189  T
Q  121 cgatctaagtctattttttgttgttgttg 149  Q
     ||||||  | | ||| ||||||||||||    
T  9036188 agatctagatatgtttgttgttgttgttg 9036160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 22963660 - 22963599
Alignment:
Q  88 ctttgaatatgcttgtggtgttgtttcacacttcgatctaagtctattttttgttgttgttg 149  Q
    |||||| |||||||||||||||| |  |||||| |||||| |||| ||||||||||||||||    
T  22963660 ctttgattatgcttgtggtgttgctctacacttagatctaggtctgttttttgttgttgttg 22963599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 23824733 - 23824794
Alignment:
Q  88 ctttgaatatgcttgtggtgttgtttcacacttcgatctaagtctattttttgttgttgttg 149  Q
    |||||| |||||||||||||||| |  |||||| |||||| |||| ||||||||||||||||    
T  23824733 ctttgattatgcttgtggtgttgctctacacttagatctaggtctgttttttgttgttgttg 23824794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 28617297 - 28617457
Alignment:
Q  23 ttggactgaactgggtaaataatattggtatgttgttttccctctcttctttcttatccttgttactttgaatatgcttgtggtgttg-tttcacacttc 121  Q
    |||||| |||||||||||| ||||||||| ||||  ||| | ||  ||||| |||||| ||||| ||||||||||||||||||||||| ||| || ||      
T  28617297 ttggaccgaactgggtaaacaatattggtgtgtttgttttcttcctttcttgcttatctttgttgctttgaatatgcttgtggtgttgcttttactctaa 28617396  T
Q  122 gatctaagtctattttttgttgttgttgttatttgagactactttacttattgattactactt 184  Q
    ||  || |||||  |||||||||| |||||  ||||| |||||||||| ||||||||| ||||    
T  28617397 gacttaggtcta--ttttgttgttcttgtttcttgaggctactttactcattgattaccactt 28617457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 46516447 - 46516510
Alignment:
Q  88 ctttgaatatgcttgtggtgttgtttcacacttcgatctaagtctattttttgttgttgttgtt 151  Q
    |||||| ||||||| |||||||| || |||||| ||| ||||||| ||||||||||||||||||    
T  46516447 ctttgattatgcttttggtgttgctttacacttagatttaagtctgttttttgttgttgttgtt 46516510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 2647820 - 2647896
Alignment:
Q  75 cttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaagtctattttttgttgttgttgtt 151  Q
    |||||| || || |||||| |||||||||||||||| |  | |||| ||| || |||| ||||||||||||||||||    
T  2647820 cttatctttattgctttgattatgcttgtggtgttgctctaaacttagatttaggtctgttttttgttgttgttgtt 2647896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 27984543 - 27984475
Alignment:
Q  23 ttggactgaactgggtaaataatattggtatgttgttttccctctcttctttcttatccttgttacttt 91  Q
    |||||||||||||| |||| ||||| | | ||| ||||||  |||||||||||||||| ||||| ||||    
T  27984543 ttggactgaactggataaacaatatcgatgtgtagttttctttctcttctttcttatctttgtttcttt 27984475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 75 - 149
Target Start/End: Complemental strand, 29651784 - 29651710
Alignment:
Q  75 cttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaagtctattttttgttgttgttg 149  Q
    |||||| || || |||||| |||||||||||||||| |  |||||| ||||||||||| ||||||||||||||||    
T  29651784 cttatctttattgctttgattatgcttgtggtgttgctctacacttagatctaagtctgttttttgttgttgttg 29651710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 48382575 - 48382683
Alignment:
Q  43 aatattggtatgttgttttccctctcttctttc-ttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaagtctattttttgt 141  Q
    ||||||||| |||||||||   ||||||||||  ||||| ||||| |||| | |||| ||||||||||| ||||||||| |||||| ||||||||||| |    
T  48382575 aatattggtgtgttgttttg--tctcttcttttattatctttgttgctttaattatgtttgtggtgttgcttcacacttagatctaggtctatttttttt 48382672  T
Q  142 t-gttgttgtt 151  Q
    | |||||||||    
T  48382673 tggttgttgtt 48382683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 35109606 - 35109727
Alignment:
Q  21 ttttggactgaactgggtaaataatattggtatgttgttttccctctcttctttcttatccttgttactttgaatatgcttgtggtgttgtttcacactt 120  Q
    ||||||||  ||||| ||||| ||||| ||| |||||||| |  ||||||||||||| || ||||| |||| | |||| ||||||||||||| | |||||    
T  35109606 ttttggaccaaactgagtaaacaatatcggtgtgttgttt-ctttctcttctttcttctctttgtttctttaattatgtttgtggtgttgttccgcactt 35109704  T
Q  121 cgatctaagtctattttttgttg 143  Q
     |||||| |||| ||| ||||||    
T  35109705 agatctaggtctgtttgttgttg 35109727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 32737110 - 32737177
Alignment:
Q  65 tctcttctttcttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaagtct 132  Q
    ||||||||||||| || ||||  |||||| |||  ||||||||||| ||||||||| |||||||||||    
T  32737110 tctcttctttcttttcattgtagctttgattatatttgtggtgttgcttcacacttagatctaagtct 32737177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 10754 - 10628
Alignment:
Q  23 ttggactgaactgggtaaataatattggtatgttgttttccctctcttctttcttatccttgttactttgaatatgcttgtggtgttgtttcacacttcg 122  Q
    |||||| ||||||||| |||||| ||||| ||||  || | |||| |  || |||||| || || |||||| |||||||||||||||| |  |||||| |    
T  10754 ttggaccgaactgggtcaataatcttggtgtgtttgttcctctctttcattgcttatctttattgctttgattatgcttgtggtgttgctctacacttag 10655  T
Q  123 atctaagtctattttttgttgttgttg 149  Q
    || || |||| ||||||||||||||||    
T  10654 atttaggtctgttttttgttgttgttg 10628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 6813658 - 6813567
Alignment:
Q  72 tttcttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaagtctatttt-ttgttgttgttgttatttgagacta 162  Q
    ||||||||| || || |||||| |||||||||| |||||||  |||||  ||  |||||||||||| ||||||||||||||  |||||||||    
T  6813658 tttcttatctttattgctttgattatgcttgtgatgttgttctacactaagacttaagtctattttgttgttgttgttgttgattgagacta 6813567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 5990699 - 5990756
Alignment:
Q  89 tttgaatatgcttgtggtgttgtttcacacttcgatctaagtctattttttgttgttg 146  Q
    |||||||||||||||||| |||||  |||||| ||| || |||||||| |||||||||    
T  5990699 tttgaatatgcttgtggttttgttctacacttagatttaggtctatttgttgttgttg 5990756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 34477330 - 34477383
Alignment:
Q  63 cctctcttctttcttatccttgttactttgaatatgcttgtggtgttgtttcac 116  Q
    |||||||||||||||||| || || |||||| |||| |||| ||||||||||||    
T  34477330 cctctcttctttcttatctttattgctttgactatgtttgtagtgttgtttcac 34477383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 149
Target Start/End: Complemental strand, 2465 - 2392
Alignment:
Q  75 cttatccttgttactttgaatatgcttgtggtgttgtttcacacttcgatctaagtctattttttgttgttgttg 149  Q
    |||||| || || |||||| ||||||||||||||||||  |||||| |||||| ||||  |||||||||||||||    
T  2465 cttatctttattgctttgattatgcttgtggtgttgttctacacttagatctaggtct-gtttttgttgttgttg 2392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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