View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0447-Insertion-3 (Length: 611)

Name: NF0447-Insertion-3
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0447-Insertion-3
NF0447-Insertion-3
[»] chr6 (13 HSPs)
chr6 (9-603)||(32826193-32826792)
chr6 (9-101)||(6978500-6978593)
chr6 (9-91)||(7591059-7591141)
chr6 (16-84)||(33450813-33450881)
chr6 (21-92)||(989501-989572)
chr6 (20-93)||(6542014-6542087)
chr6 (9-88)||(9929297-9929375)
chr6 (19-90)||(20207190-20207261)
chr6 (19-90)||(22101213-22101284)
chr6 (25-101)||(26894168-26894246)
chr6 (15-65)||(9540583-9540633)
chr6 (46-88)||(33148312-33148354)
chr6 (7-88)||(33240886-33240965)
[»] chr1 (6 HSPs)
chr1 (15-109)||(7439080-7439173)
chr1 (18-92)||(31577995-31578069)
chr1 (27-88)||(38091249-38091310)
chr1 (7-77)||(10308233-10308303)
chr1 (38-135)||(12019043-12019139)
chr1 (20-56)||(2749246-2749282)
[»] chr2 (4 HSPs)
chr2 (7-101)||(24166792-24166886)
chr2 (9-90)||(28816182-28816262)
chr2 (9-108)||(37267714-37267813)
chr2 (9-57)||(44647250-44647298)
[»] chr7 (6 HSPs)
chr7 (9-109)||(44453600-44453700)
chr7 (9-88)||(22713451-22713529)
chr7 (9-71)||(2391586-2391648)
chr7 (18-91)||(40256819-40256892)
chr7 (9-80)||(17115885-17115956)
chr7 (7-101)||(10382014-10382107)
[»] chr8 (11 HSPs)
chr8 (7-101)||(39039704-39039798)
chr8 (35-101)||(9045699-9045765)
chr8 (9-107)||(44173149-44173247)
chr8 (9-92)||(27157699-27157782)
chr8 (7-64)||(29026240-29026297)
chr8 (9-88)||(40506616-40506695)
chr8 (47-101)||(7229072-7229126)
chr8 (7-101)||(31078800-31078894)
chr8 (60-101)||(6030054-6030095)
chr8 (24-109)||(7685447-7685531)
chr8 (26-102)||(3103761-3103837)
[»] chr4 (4 HSPs)
chr4 (7-101)||(9603867-9603961)
chr4 (7-67)||(29491942-29492002)
chr4 (9-54)||(37211011-37211056)
chr4 (7-88)||(38303253-38303334)
[»] chr3 (8 HSPs)
chr3 (9-90)||(7925345-7925426)
chr3 (9-90)||(25123224-25123305)
chr3 (7-92)||(33513403-33513488)
chr3 (7-71)||(26665523-26665587)
chr3 (20-87)||(1750080-1750147)
chr3 (18-98)||(23771689-23771771)
chr3 (7-90)||(18395501-18395583)
chr3 (8-80)||(25838063-25838135)
[»] chr5 (6 HSPs)
chr5 (9-80)||(13271486-13271557)
chr5 (21-88)||(17223081-17223148)
chr5 (9-79)||(27549736-27549806)
chr5 (9-78)||(33043868-33043937)
chr5 (20-89)||(35323616-35323685)
chr5 (45-91)||(30124539-30124585)


Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 9 - 603
Target Start/End: Complemental strand, 32826792 - 32826193
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatggaatttttatacggttc 108  Q
    ||||||||| ||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32826792 tttttccattctatgagtttctcgcgcgttctatttgaattctaaaattttaaatatttcaacgagtttttggaggttttatggaatttttatgcggttc 32826693  T
Q  109 gaaactgtataggacgcgtgagaagctcaatggnnnnnnnnnnnttaaacagtaaaatatgaaattcctt----ttgaaagtaacaacaatacattgctt 204  Q
    | ||| |||||| |||||| |||||||||||||           |||||||||||||| |||||||||||    |||||||||||||   ||||||||||    
T  32826692 ggaaccgtatagaacgcgtaagaagctcaatggaaaaagaaa--ttaaacagtaaaatttgaaattccttggatttgaaagtaacaa---tacattgctt 32826598  T
Q  205 ttacaaaaaa-tagtgaaaatacattgctgtgttagacatgtttggtcattgtcagtcacatgttactgtgttaggaaagcttttcttcctcttctactc 303  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32826597 ttacaaaaaaatagtgaaaatacattgctgtgttagacatgtttggtcattgtcagtcacatgttactgtgttaggaaagcttttcttcctcttctactc 32826498  T
Q  304 agacttgggcaatgttcaacttgtcaagcaaatgctacatttagnnnnnnnnctttaaatagtaaatatcagtacaattttattgttgctgccattcttt 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32826497 agacttgggcaatgttcaacttgtcaagcaaatgctacatttagttttttttctttaaatagtaaatatcagtacaattttattgttgctgccattcttt 32826398  T
Q  404 caatttaattaacttgccaaccttataactccaataaattaagtgtggcaannnnnnnnnaatatgtagaattttagatgaagtctacatgtatannnnn 503  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||         
T  32826397 caacttaattaacttgccaaccttataactccaataaattaagtgtggcaatttttttttaatatgtagaattttagatgaagtctacatgtatattttt 32826298  T
Q  504 nnagatacatttctgtttgagatctaaagagtaataaagataattggtcctc-----tttccagannnnnnnnatatagggtacgccgtcacatcaccac 598  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||        |||||||||||||||||||||||||||    
T  32826297 ttagatacatttctgtttgagatctaaagagtaataaagataattggtcctctttaatttccagattttttttatatagggtacgccgtcacatcaccac 32826198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 6978593 - 6978500
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacg-agtttttggaggttttatggaatttttat 101  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||| | ||||||||||||| | ||||||||||||||||||| |||||||    
T  6978593 tttttccatcctatgagtttctcgtgcgtcctatttggattctaaaatctaaaatatttcaacgtaatttttggaggttttatggagtttttat 6978500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 7591059 - 7591141
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatg 91  Q
    |||| ||||||||||| |||| ||||||||||||| ||||||||||||   ||||||||||||| |||||| |||||||||||    
T  7591059 ttttcccatcctatgaatttcccgcgcgtcctattaagattctaaaatccgaaatatttcaacgtgttttttgaggttttatg 7591141  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 33450813 - 33450881
Alignment:
Q  16 atcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggagg 84  Q
    |||||||||| |||| ||||||||||||  ||||||||||||  ||||||||||||| |||||||||||    
T  33450813 atcctatgagcttcttgcgcgtcctattcggattctaaaattcgaaatatttcaacgtgtttttggagg 33450881  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 989501 - 989572
Alignment:
Q  21 atgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatgg 92  Q
    ||||| ||||||| || |||||| ||| |||||||| | ||||||||||||| |||||||||| ||||||||    
T  989501 atgagcttctcgcacgccctattcagaatctaaaatctgaaatatttcaacgtgtttttggagattttatgg 989572  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 6542087 - 6542014
Alignment:
Q  20 tatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatgga 93  Q
    ||||||||||||| | |||||||| |||||||||||||  |||||||| |||| | ||||| || |||||||||    
T  6542087 tatgagtttctcgtgtgtcctattcagattctaaaattcaaaatattttaacgtgcttttgaagattttatgga 6542014  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 9929297 - 9929375
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggtttt 88  Q
    ||||| |||||||||||| | |||| | ||||||||||||| |||||| | |||| |||||||| | |||||||||||||    
T  9929297 ttttttcatcctatgagtatgtcgcacctcctatttagattttaaaatctgaaatctttcaacgtg-ttttggaggtttt 9929375  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 20207261 - 20207190
Alignment:
Q  19 ctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttat 90  Q
    |||||| | ||||||  |||||||| |||||||||||| | ||||||||||||| ||||||| || ||||||    
T  20207261 ctatgaatatctcgcatgtcctattcagattctaaaatctgaaatatttcaacgtgtttttgaagtttttat 20207190  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 22101284 - 22101213
Alignment:
Q  19 ctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttat 90  Q
    |||||| | ||||||  |||||||| |||||||||||| | ||||||||||||| ||||||| || ||||||    
T  22101284 ctatgaatatctcgcatgtcctattcagattctaaaatctgaaatatttcaacgtgtttttgaagtttttat 22101213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 26894246 - 26894168
Alignment:
Q  25 gtttctcgcgcgtcctatttagattctaaaattttaaatatttcaac--gagtttttggaggttttatggaatttttat 101  Q
    |||||||| ||||||||||| | ||||||||||  |||||||| |||  | ||||||||||||||||||  ||||||||    
T  26894246 gtttctcgtgcgtcctatttggtttctaaaattcaaaatatttgaacgtgtgtttttggaggttttatgagatttttat 26894168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 9540633 - 9540583
Alignment:
Q  15 catcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatat 65  Q
    ||||||||||||||||| |||| |||||| |||||||||||| | ||||||    
T  9540633 catcctatgagtttctcacgcgccctattcagattctaaaatctgaaatat 9540583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 33148354 - 33148312
Alignment:
Q  46 gattctaaaattttaaatatttcaacgagtttttggaggtttt 88  Q
    |||||||||| || ||||||||||||| |||||||||||||||    
T  33148354 gattctaaaaattgaaatatttcaacgtgtttttggaggtttt 33148312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 33240965 - 33240886
Alignment:
Q  7 attttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggtttt 88  Q
    |||||||  ||||||||||||||||| ||| ||||||  |||||||||||   ||||||||||||  ||||||| |||||||    
T  33240965 attttttatatcctatgagtttctcgtgcgccctattcggattctaaaatccgaaatatttcaac--gtttttgaaggtttt 33240886  T

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Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 7439173 - 7439080
Alignment:
Q  15 catcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatggaatttttatacggttcg 109  Q
    ||||||||||| ||||||||||||||||| | |||||||||| | ||||||||||||| ||||||| ||||||||||| | ||||||||||||||    
T  7439173 catcctatgagattctcgcgcgtcctattcaaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatggga-ttttatacggttcg 7439080  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 31578069 - 31577995
Alignment:
Q  18 cctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatgg 92  Q
    |||||||| |||||||||| ||||||| |||||||||||   ||||||||||||| |||||||||||||||||||    
T  31578069 cctatgagcttctcgcgcgccctatttggattctaaaatccgaaatatttcaacgtgtttttggaggttttatgg 31577995  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 38091310 - 38091249
Alignment:
Q  27 ttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggtttt 88  Q
    ||||||||||||||||| |||||||||||||  |||||||||| || ||| ||| |||||||    
T  38091310 ttctcgcgcgtcctattcagattctaaaattcgaaatatttcaccgtgttattgaaggtttt 38091249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 10308303 - 10308233
Alignment:
Q  7 attttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagttt 77  Q
    ||||||||||   |||||||||||||| || | |||||||||||||||||   ||||||||||||| ||||    
T  10308303 attttttccactgtatgagtttctcgcacgccatatttagattctaaaatccaaaatatttcaacgtgttt 10308233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 12019139 - 12019043
Alignment:
Q  38 cctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatggaatttttatacggttcgaaactgtataggacgcgtgagaagct 135  Q
    |||||||| |||||||||||  |||||||| || | |||||| |||||||||| | ||||| || | | |||||| || ||||| |||||||||||||    
T  12019139 cctatttaaattctaaaattcaaaatattttaatgtgttttttgaggttttataggattttcatgcag-tcgaaattgcatagggcgcgtgagaagct 12019043  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 2749282 - 2749246
Alignment:
Q  20 tatgagtttctcgcgcgtcctatttagattctaaaat 56  Q
    ||||||||||||||||| || ||||||||||||||||    
T  2749282 tatgagtttctcgcgcgcccaatttagattctaaaat 2749246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 24166792 - 24166886
Alignment:
Q  7 attttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatggaatttttat 101  Q
    |||||||||| |||||||||||||| |||| ||||||  |||||| |||||  ||||||||||||  |||||| ||||||||||||| |||||||    
T  24166792 attttttccaccctatgagtttctcacgcgccctattcggattcttaaattcgaaatatttcaacatgtttttagaggttttatggagtttttat 24166886  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 28816262 - 28816182
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttat 90  Q
    |||||||| | ||| ||||||||| ||| |||||| | ||| |||||||||||||||||||||| | |||||||||||||||    
T  28816262 tttttccaccttataagtttctcgtgcgccctattcaaattataaaattttaaatatttcaacgtg-ttttggaggttttat 28816182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 37267714 - 37267813
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatggaatttttatacggttc 108  Q
    |||||||| | |||||| |||||| | | ||||||| |||||||||||   |||||||| |||| ||||| ||||||||||||  |||||||||| ||||    
T  37267714 tttttccaccttatgagcttctcgtgtgccctatttggattctaaaatccgaaatattttaacgtgttttgggaggttttatgagatttttatacagttc 37267813  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 44647298 - 44647250
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaaatt 57  Q
    ||||| |||||||| || || |||||||||||| |||||||||||||||    
T  44647298 ttttttcatcctataagcttatcgcgcgtcctacttagattctaaaatt 44647250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 44453600 - 44453700
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatggaatttttatacggttc 108  Q
    ||||| || ||||| |||||||||  |||||||||  ||||||||||||  ||||||||||||| ||||||||| |||||||||| | ||||||| ||||    
T  44453600 ttttttcaccctataagtttctcgtacgtcctattcggattctaaaattcgaaatatttcaacgtgtttttggaagttttatggagtctttatacagttc 44453699  T
Q  109 g 109  Q
    |    
T  44453700 g 44453700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 22713529 - 22713451
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggtttt 88  Q
    |||||||| | ||||||||||||| ||| |||||||  ||| |||||| | ||||||||||||| |||||||||||||||    
T  22713529 tttttccaccttatgagtttctcgtgcg-cctatttgaattttaaaatctgaaatatttcaacgtgtttttggaggtttt 22713451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 2391586 - 2391648
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaac 71  Q
    ||||| ||||||||||||||||||||||  |||||| |||||||||||   ||||||||||||    
T  2391586 ttttttcatcctatgagtttctcgcgcgcactatttggattctaaaatccgaaatatttcaac 2391648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 40256819 - 40256892
Alignment:
Q  18 cctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatg 91  Q
    ||||||||||| ||||||| | ||||  |||| |||||| | ||||||| ||||| ||||||||||||||||||    
T  40256819 cctatgagtttttcgcgcgccttattcggattttaaaatctgaaatattgcaacgtgtttttggaggttttatg 40256892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 17115885 - 17115956
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttg 80  Q
    |||||| |||||||||||||  | ||||| |||||| |||| |||||| | ||||||||||||| |||||||    
T  17115885 tttttctatcctatgagttttcctcgcgttctatttggattttaaaatctaaaatatttcaacgtgtttttg 17115956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 10382107 - 10382014
Alignment:
Q  7 attttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatggaatttttat 101  Q
    |||||||||||| ||||| |||||||| |||| |||| ||||| ||||||   ||| |||| |||| ||||||| |||||||||||  |||||||    
T  10382107 attttttccatcgtatgactttctcgcacgtcttattaagattttaaaatccgaaa-attttaacgtgtttttgaaggttttatggggtttttat 10382014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 39039704 - 39039798
Alignment:
Q  7 attttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatggaatttttat 101  Q
    ||||||| |||||||| || |||| |||||||||||||||||||||||||   ||| ||||||||| |||||| || ||||||||| | ||||||    
T  39039704 atttttttcatcctataagcttcttgcgcgtcctatttagattctaaaatccgaaacatttcaacgtgtttttagaagttttatgggaattttat 39039798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 9045765 - 9045699
Alignment:
Q  35 cgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatggaatttttat 101  Q
    ||||||||| |||||  ||||| | ||||||||||||| |||||||||||||||||||| |||||||    
T  9045765 cgtcctattcagatttaaaaatctgaaatatttcaacgtgtttttggaggttttatggagtttttat 9045699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 44173149 - 44173247
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatggaatttttatacggtt 107  Q
    |||||||||| ||| |  |||||||||| |||||| ||||||||||||   |||||||||||||  ||||||||| ||||||| | ||||| |||||||    
T  44173149 tttttccatcttataaaattctcgcgcgccctattcagattctaaaatcagaaatatttcaacgtatttttggagattttatgaagtttttttacggtt 44173247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 27157782 - 27157699
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatgg 92  Q
    |||||||| ||||||||||||||| |||| |||||  |||||||||||   || |||||||||| | |||||||| ||||||||    
T  27157782 tttttccaccctatgagtttctcgtgcgtgctattcggattctaaaatccgaattatttcaacgtggttttggagattttatgg 27157699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 29026297 - 29026240
Alignment:
Q  7 attttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaata 64  Q
    |||||||| |||||||||||||||||||  ||||||| | |||||||||||| |||||    
T  29026297 attttttctatcctatgagtttctcgcgtatcctattcaaattctaaaatttgaaata 29026240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 40506616 - 40506695
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggtttt 88  Q
    ||||| ||||||||||||||||||   | ||||||| |||| ||||||   ||||||||||||| | |||||||||||||    
T  40506616 ttttttcatcctatgagtttctcgtatgccctatttggattgtaaaatccgaaatatttcaacgtgattttggaggtttt 40506695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 7229126 - 7229072
Alignment:
Q  47 attctaaaattttaaatatttcaacgagtttttggaggttttatggaatttttat 101  Q
    |||||||||||| ||||||||||||  ||||||| | ||||||||| ||||||||    
T  7229126 attctaaaatttgaaatatttcaacatgtttttgaatgttttatgggatttttat 7229072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 31078894 - 31078800
Alignment:
Q  7 attttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatggaatttttat 101  Q
    ||||||| | || |||||||||||||||| |||||||| |  |||||||||| |||| ||| |||| ||||| | |  ||||||||||| |||||    
T  31078894 atttttttcttcttatgagtttctcgcgcatcctatttggtctctaaaatttgaaatgttttaacgtgttttggaaatttttatggaatatttat 31078800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 6030095 - 6030054
Alignment:
Q  60 aaatatttcaacgagtttttggaggttttatggaatttttat 101  Q
    ||||||||||||| ||||||||| |||||||| |||||||||    
T  6030095 aaatatttcaacgtgtttttggaagttttatgaaatttttat 6030054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 7685447 - 7685531
Alignment:
Q  24 agtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatggaatttttatacggttcg 109  Q
    |||||||||| | ||||||||| ||| |||||| | |||||||||||||   ||||| | |||||||||| ||||||| |||||||    
T  7685447 agtttctcgcacatcctatttaaattttaaaatctgaaatatttcaacg-tattttgaaagttttatggagtttttatgcggttcg 7685531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 3103761 - 3103837
Alignment:
Q  26 tttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatggaatttttata 102  Q
    ||||||||||  | |||| ||||| |||||| | ||||||||||||| ||||||| || ||||||  ||||||||||    
T  3103761 tttctcgcgcaccttattcagattttaaaatctaaaatatttcaacgtgtttttgaagattttattaaatttttata 3103837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 9603961 - 9603867
Alignment:
Q  7 attttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatggaatttttat 101  Q
    |||||| ||| |||||||  ||||||||||||||||| | |||||||||| | |||||||| ||||  ||||||||||||||||||  |||||||    
T  9603961 atttttcccaccctatgaccttctcgcgcgtcctattcaaattctaaaatctgaaatattttaacgtatttttggaggttttatggggtttttat 9603867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 29492002 - 29491942
Alignment:
Q  7 attttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatattt 67  Q
    |||||||||| | ||| |||||||||||||| ||||| ||||| |||||||| ||||||||    
T  29492002 attttttccaccttataagtttctcgcgcgttctattcagattttaaaatttaaaatattt 29491942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 37211011 - 37211056
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaa 54  Q
    ||||| ||||||||||||||||| ||||||||||| ||||| ||||    
T  37211011 ttttttcatcctatgagtttctcacgcgtcctattcagattataaa 37211056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 38303253 - 38303334
Alignment:
Q  7 attttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggtttt 88  Q
    ||||||||||| |||||||||||||||||   |||||  |||  |||||| | |||| |||||| | |||||||||||||||    
T  38303253 attttttccattctatgagtttctcgcgcactctattcggatcttaaaatctgaaatgtttcaatgcgtttttggaggtttt 38303334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 7925345 - 7925426
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttat 90  Q
    |||||||| ||||||| |||||| || ||||||||||||||||||||| | |||||||||||||  |||||  |||||||||    
T  7925345 tttttccaccctatgaatttctcacgtgtcctatttagattctaaaatctgaaatatttcaacgtattttttaaggttttat 7925426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 25123224 - 25123305
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttat 90  Q
    |||||||| | ||||||||| ||||||| |||||| ||||||||||||   |||||||| |||| |||||||||||||||||    
T  25123224 tttttccaccatatgagtttttcgcgcgccctattcagattctaaaatccaaaatattttaacgcgtttttggaggttttat 25123305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 33513488 - 33513403
Alignment:
Q  7 attttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttatgg 92  Q
    |||||||||| ||||||||||||| | ||  ||||||  |||||||||||  |||||||||||||| ||||| |||||||||||||    
T  33513488 attttttccaccctatgagtttcttgtgcaccctattcggattctaaaatcctaaatatttcaacgtgttttcggaggttttatgg 33513403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 26665587 - 26665523
Alignment:
Q  7 attttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaac 71  Q
    |||||| ||||||||||||||||||||||||||||||| |||| ||||||   ||||||||||||    
T  26665587 atttttcccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaac 26665523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 1750080 - 1750147
Alignment:
Q  20 tatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttt 87  Q
    ||||||||||||| ||||||||||| ||||||||||| | |||| |||||||| | ||| ||||||||    
T  1750080 tatgagtttctcgtgcgtcctatttggattctaaaatctaaaatgtttcaacgtgatttaggaggttt 1750147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 23771689 - 23771771
Alignment:
Q  18 cctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaac--gagtttttggaggttttatggaatttt 98  Q
    |||||||| || |||||||  |||||| ||||||||||| ||||||||||||||  |  ||||||||||||||||||| ||||    
T  23771689 cctatgagcttatcgcgcgctctatttggattctaaaatcttaaatatttcaacatgtttttttggaggttttatggagtttt 23771771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 18395501 - 18395583
Alignment:
Q  7 attttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggttttat 90  Q
    |||||| ||||||||||||||| ||||||| |||||||  ||||| ||||   ||||||||||| | |||| ||||||||||||    
T  18395501 atttttcccatcctatgagttt-tcgcgcgccctatttgtattctgaaatccgaaatatttcaatgtgtttgtggaggttttat 18395583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 25838063 - 25838135
Alignment:
Q  8 ttttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttg 80  Q
    |||||| |||||||| | ||| ||| |||||||||| ||||||||||||   ||||||||||||  |||||||    
T  25838063 tttttttcatcctataaatttttcgtgcgtcctattcagattctaaaatccaaaatatttcaacatgtttttg 25838135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 13271557 - 13271486
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttg 80  Q
    |||||||| | ||| |||||||||||||||||||||  |||||||||| | ||||||||||||| |||||||    
T  13271557 tttttccaccatattagtttctcgcgcgtcctatttgaattctaaaatctgaaatatttcaacgtgtttttg 13271486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 17223081 - 17223148
Alignment:
Q  21 atgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggtttt 88  Q
    ||||||||||| |||| | ||||||||||||||||| | ||||||||||||| ||||||| |||||||    
T  17223081 atgagtttctcacgcgccttatttagattctaaaatctgaaatatttcaacgtgtttttgcaggtttt 17223148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 27549806 - 27549736
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagttttt 79  Q
    ||||||| || |||||||||||||| | || ||||||||||||||||||| |||| |||||||| ||||||    
T  27549806 tttttccgtcatatgagtttctcgcacatcatatttagattctaaaatttgaaatgtttcaacgtgttttt 27549736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 33043868 - 33043937
Alignment:
Q  9 tttttccatcctatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttt 78  Q
    |||||||||||||||||||||| || |  |||||||| |||||||||| | |||||||| |||| |||||    
T  33043868 tttttccatcctatgagtttcttgcacaccctatttaaattctaaaatctgaaatattttaacgtgtttt 33043937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 35323616 - 35323685
Alignment:
Q  20 tatgagtttctcgcgcgtcctatttagattctaaaattttaaatatttcaacgagtttttggaggtttta 89  Q
    |||||| |||||| |||||||||| ||||||||||||   |||||||||||||  |||||| ||||||||    
T  35323616 tatgagattctcgtgcgtcctattcagattctaaaatccgaaatatttcaacgtatttttgaaggtttta 35323685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 30124539 - 30124585
Alignment:
Q  45 agattctaaaattttaaatatttcaacgagtttttggaggttttatg 91  Q
    |||||||||||||| ||||| ||||||| |||||| |||||||||||    
T  30124539 agattctaaaatttaaaatagttcaacgtgtttttagaggttttatg 30124585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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