View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447-Insertion-30 (Length: 337)
Name: NF0447-Insertion-30
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447-Insertion-30 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 5 - 333
Target Start/End: Original strand, 46682074 - 46682402
Alignment:
| Q |
5 |
acagattcttcggttgatatttccacgacagagaatttagaaaaactttgccaaattggtgacaaattattgaagaaaccagtatctaaggtcaatttag |
104 |
Q |
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| T |
46682074 |
acagattcttcggttgatatttccacgacagagaatttagaaaaactttgccaaattggtgacaaattattgaagaaaccagtatctaaggtcaatttag |
46682173 |
T |
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| Q |
105 |
agaatggtatgtttgagcctattgaaaagggagaaaccaacgaagatgccctcaaaaggtaaatatatacaaaacatgtttcattataattaatagacaa |
204 |
Q |
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| T |
46682174 |
agaatggtatgtttgagcctatggaaaagggagaaaccaacgaagatgccctcaaaaggtaaatatatacaaaacatgtttcattataattaatagacaa |
46682273 |
T |
|
| Q |
205 |
ttatgtgattaaatgactaaacatttgttgtaacctttgcaggtttgccaaaatactttctcaagagaggaggctacgagagttgaaatcccctcacact |
304 |
Q |
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||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46682274 |
ttatgtgattaaatgactaaacatttgttttaatctttccaggtttgccaaaatactttctcaagagaggaggctccgagagttgaaatcccctcacact |
46682373 |
T |
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| Q |
305 |
aataataaagccttgatatagagaaacat |
333 |
Q |
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| T |
46682374 |
aataataaagctttgatatagagaaacat |
46682402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 5 - 165
Target Start/End: Original strand, 46678083 - 46678243
Alignment:
| Q |
5 |
acagattcttcggttgatatttccacgacagagaatttagaaaaactttgccaaattggtgacaaattattgaagaaaccagtatctaaggtcaatttag |
104 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
46678083 |
acagattcttcggttgatatttccacaaaagagaatttagaaaaactttgccaaattggtgacagattgttgaagaaaccagtatctaaggtcaatttag |
46678182 |
T |
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| Q |
105 |
agaatggtatgtttgagcctattgaaaagggagaaaccaacgaagatgccctcaaaaggta |
165 |
Q |
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| T |
46678183 |
agaatggtatgtttgagcctattgaaaatggggagaccaaccaagaagctctcaaaaggta |
46678243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 204 - 333
Target Start/End: Complemental strand, 46655463 - 46655337
Alignment:
| Q |
204 |
attatgtgattaaatgactaaacatttgttgtaacctttgcaggtttgccaaaatactttctcaagagaggaggctacgagagttgaaatcccctcacac |
303 |
Q |
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|||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46655463 |
attatgcgattaaatgactaaacatttgttttaatctttgcaggtttgccaaaatactttctcaagagaggaggctacgagagttgaaatcccctcacac |
46655364 |
T |
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| Q |
304 |
taataataaagccttgatatagagaaacat |
333 |
Q |
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| T |
46655363 |
---caataaagctttaatatagagaaacat |
46655337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 46678365 - 46678429
Alignment:
| Q |
242 |
tgcaggtttgccaaaatactttctcaagagaggaggctacgagagttgaaatcccctcacactaa |
306 |
Q |
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| T |
46678365 |
tgcaggtttgcaaaaatactatcacaagagaggaagcttcgagaattgacatcccctcacactaa |
46678429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 6088789 - 6088670
Alignment:
| Q |
47 |
aaactttgccaaattggtgacaaattattgaagaaaccagtatctaaggtcaatttagagaatggtatgtttgagcctattga-aaagggagaaaccaac |
145 |
Q |
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||||| |||||||||||||| || ||||| |||||||| || |||| ||||||||||| |||||| |||||||| | ||| ||| ||||||||||| |
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| T |
6088789 |
aaactgtgccaaattggtgaaaatttattaaagaaaccggtctctagagtcaatttagaaaatggtcactttgagcc-actgacaaatggagaaaccaat |
6088691 |
T |
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| Q |
146 |
gaagatgccctcaaaaggtaa |
166 |
Q |
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||||| || ||||| |||||| |
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| T |
6088690 |
gaagaagctctcaagaggtaa |
6088670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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