View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447-Insertion-4 (Length: 548)
Name: NF0447-Insertion-4
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447-Insertion-4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 284 - 548
Target Start/End: Original strand, 552325 - 552605
Alignment:
| Q |
284 |
gttgaacaaagagcgaatcaaatcataatcttaacataaca--------------taaaccagagacataatatgttggc--gtgcagaaagatgccaat |
367 |
Q |
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| T |
552325 |
gttgaacaaagagcgaatcaaatcataatcttaacataacaattacaatccttcataaaccagagacataatatgttggcacgtgcagaaagatgccaat |
552424 |
T |
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| Q |
368 |
atttcatggaactttcaacacaatgaagacttgcatatttcaagcatgcaatctatcttcaaatacaactcaggaaataagatttaaaccccgatggata |
467 |
Q |
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| T |
552425 |
atttcatggaactttcaacacaatgaagacttgcatatttcaagcatgcaatctatcttcaaatacaactcaggaaataagatttaaaccccgatggata |
552524 |
T |
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| Q |
468 |
tgagtaattagcagagaatattttctcaagtatctgcagaaatgaaagagacaatcaagaattaaatttgcagaataatat |
548 |
Q |
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| T |
552525 |
tgagtaattagcagagaatattttctcaagtatctgcagaaatgaaagagacaatcaagaattaaatttgcagaataatat |
552605 |
T |
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Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 552062 - 552263
Alignment:
| Q |
6 |
cagtcccaacaacaagctgtccataaaaagtgacaatcatacaaatacccccaaaactcagcattggtttgaaaccaaaacatcaattctaacatattac |
105 |
Q |
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| T |
552062 |
cagtcccaacaacaagctgtccataaaaagtgacaatcatacaaatacccccaaaactcagcattggtttgaaaccaaaacatcaattctaacatattac |
552161 |
T |
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| Q |
106 |
caagtctcaaatttatcatgagccattttttactcaaatccctcattttccatactttgtagtaatccaacaaaaatgcattaacaatgacaccaattca |
205 |
Q |
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| T |
552162 |
caagtctcaaatttatcatgagccattttttactcaaatccctcattttccatactttgtagtaatccaacaaaaatgcattaacaatgacaccaattca |
552261 |
T |
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| Q |
206 |
gc |
207 |
Q |
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| T |
552262 |
gc |
552263 |
T |
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