View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0447-Insertion-5 (Length: 515)

Name: NF0447-Insertion-5
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0447-Insertion-5
NF0447-Insertion-5
[»] chr3 (12 HSPs)
chr3 (270-515)||(11020186-11020432)
chr3 (8-93)||(11020474-11020561)
chr3 (350-514)||(42340284-42340448)
chr3 (353-515)||(53497051-53497213)
chr3 (423-515)||(27608909-27609001)
chr3 (423-490)||(34497403-34497470)
chr3 (431-490)||(647194-647253)
chr3 (349-515)||(55199526-55199692)
chr3 (327-420)||(647312-647406)
chr3 (8-46)||(11027359-11027397)
chr3 (424-490)||(24176860-24176926)
chr3 (467-511)||(27747695-27747739)
[»] chr7 (9 HSPs)
chr7 (327-515)||(29200961-29201150)
chr7 (327-515)||(16731925-16732114)
chr7 (327-515)||(17710059-17710248)
chr7 (349-515)||(22289256-22289422)
chr7 (349-515)||(9328608-9328774)
chr7 (412-515)||(16098568-16098671)
chr7 (426-511)||(30493620-30493705)
chr7 (425-515)||(3601743-3601833)
chr7 (442-515)||(24139139-24139212)
[»] chr4 (15 HSPs)
chr4 (349-515)||(37245858-37246024)
chr4 (349-515)||(29655672-29655838)
chr4 (328-515)||(43840312-43840501)
chr4 (349-511)||(32577058-32577220)
chr4 (327-515)||(49951305-49951494)
chr4 (349-490)||(56065644-56065785)
chr4 (349-515)||(2064868-2065034)
chr4 (349-515)||(28426198-28426364)
chr4 (327-515)||(28537793-28537980)
chr4 (349-515)||(49119406-49119572)
chr4 (349-515)||(51734978-51735143)
chr4 (349-515)||(55735024-55735190)
chr4 (361-511)||(26422612-26422762)
chr4 (426-515)||(51259535-51259624)
chr4 (349-490)||(21321542-21321685)
[»] chr5 (14 HSPs)
chr5 (327-515)||(25730800-25730989)
chr5 (349-512)||(8388101-8388264)
chr5 (349-515)||(20204970-20205136)
chr5 (327-515)||(15988755-15988944)
chr5 (349-490)||(26597488-26597629)
chr5 (349-512)||(27532915-27533078)
chr5 (349-515)||(41940743-41940908)
chr5 (349-515)||(4268114-4268280)
chr5 (327-515)||(12660308-12660497)
chr5 (349-486)||(22767292-22767429)
chr5 (358-515)||(27292458-27292615)
chr5 (349-490)||(11375544-11375685)
chr5 (349-515)||(34652260-34652426)
chr5 (425-490)||(32632606-32632671)
[»] chr8 (9 HSPs)
chr8 (349-492)||(7127238-7127381)
chr8 (349-515)||(185597-185762)
chr8 (349-515)||(23853947-23854113)
chr8 (349-490)||(478087-478228)
chr8 (349-490)||(8451154-8451295)
chr8 (425-515)||(598243-598333)
chr8 (327-375)||(13415015-13415064)
chr8 (425-511)||(40588740-40588826)
chr8 (343-375)||(9496791-9496823)
[»] chr6 (7 HSPs)
chr6 (352-515)||(15606000-15606163)
chr6 (327-515)||(28107131-28107320)
chr6 (349-515)||(30801997-30802163)
chr6 (349-515)||(19690885-19691051)
chr6 (327-515)||(14680154-14680343)
chr6 (349-490)||(15053206-15053347)
chr6 (327-376)||(29368201-29368251)
[»] chr1 (9 HSPs)
chr1 (349-515)||(25682666-25682832)
chr1 (335-515)||(44527253-44527434)
chr1 (349-515)||(36733711-36733877)
chr1 (349-515)||(44602767-44602933)
chr1 (349-515)||(48949730-48949896)
chr1 (349-490)||(51113330-51113471)
chr1 (425-490)||(2885314-2885379)
chr1 (425-515)||(5609430-5609520)
chr1 (327-454)||(48166229-48166357)
[»] chr2 (10 HSPs)
chr2 (327-512)||(88551-88737)
chr2 (349-515)||(34695910-34696076)
chr2 (349-515)||(34718322-34718488)
chr2 (430-515)||(26198778-26198863)
chr2 (423-515)||(1417987-1418079)
chr2 (425-515)||(9710046-9710136)
chr2 (349-515)||(12130644-12130810)
chr2 (426-491)||(13109899-13109964)
chr2 (398-515)||(22845600-22845717)
chr2 (427-507)||(14827173-14827253)
[»] scaffold0446 (1 HSPs)
scaffold0446 (349-490)||(201-342)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 270 - 515
Target Start/End: Complemental strand, 11020432 - 11020186
Alignment:
Q  270 atgttggtagatgctgactgtgcaaagttgtctatgtggcacacacatgacatttaactcaaatgaaatggcagtggacaa-tatgacagttttggaggg 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||| ||||||| ||||||||||    
T  11020432 atgttggtagatgctgactgtgcaaagttgtctatgtggcacacacttgacatttaactcaaatgaaatgaaagtggacaaatatgacacttttggaggg 11020333  T
Q  369 ggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagctactcgagtgtaaggtcta 468  Q
    |||| || |||||||| ||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||    
T  11020332 ggagacatcagctttactcgatgctatttactttgctgatgggaacaaatggaactgggttgtcttcgagtctgacttaactactccagtgtaaggtcta 11020233  T
Q  469 tcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||||||||||||||||||| | || |||||||||||||||||||    
T  11020232 tcgtctccgggccatggtgattcagaattctgtgctattgtttctag 11020186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 11020561 - 11020474
Alignment:
Q  8 gacatgacacatgtgaactagataaaatggattgattataaatctttagttgatgt--gaaaaggtcatgtcacgggtagatgaaagg 93  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||    
T  11020561 gacatgacacatgtgaactagataaaatagattgattataaatctttagttgatgtgagaaaaggtcacgtcacgggtagatgaaagg 11020474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 350 - 514
Target Start/End: Complemental strand, 42340448 - 42340284
Alignment:
Q  350 atatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagc 449  Q
    |||||||||| |||||||||||||||| |||  || ||||||  ||| |||||||||||| ||||| ||||  | | |||||||||||||| |||| |||    
T  42340448 atatgacagtgttggagggggaggcaatagccctactcgatgtcattcactttgcagatgtgaacagatgggaccgagttgtcttcgagtcagactcagc 42340349  T
Q  450 tactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttcta 514  Q
    ||||  |||| ||| ||| |||||||||||||||||||||| | || ||| ||||||||||||||    
T  42340348 tactttagtgcaagctctgtcgtctccgggccatggtgattcagaattctatgctattgtttcta 42340284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 515
Target Start/End: Original strand, 53497051 - 53497213
Alignment:
Q  353 tgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagctac 452  Q
    |||||||||| ||||||||||||  ||| ||| | || ||  || ||||||| ||||  |||| ||||  | |||||||||||||||| |||| | ||||    
T  53497051 tgacagtttttgagggggaggcagtagccttactagaggcccttcactttgctgatgctaacagatgggaccgggttgtcttcgagtccgactcatctac 53497150  T
Q  453 tcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    ||  ||| ||| ||||||||||||||||||||||||||   || ||| |||||||||||||||    
T  53497151 tcttgtgcaagctctatcgtctccgggccatggtgattcggaattctatgctattgtttctag 53497213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 423 - 515
Target Start/End: Complemental strand, 27609001 - 27608909
Alignment:
Q  423 ctgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||||||||||||||| |||| |||||||| |||| |||  |||||||||||||||||||||||||   || | | |||||||||||||||    
T  27609001 ctgggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgctattgtttctag 27608909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 423 - 490
Target Start/End: Complemental strand, 34497470 - 34497403
Alignment:
Q  423 ctgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatt 490  Q
    |||||||||||||||||| |||| |||||||| |||| |||  |||||||||||||||||||||||||    
T  34497470 ctgggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgatt 34497403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 490
Target Start/End: Complemental strand, 647253 - 647194
Alignment:
Q  431 tcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatt 490  Q
    ||||||||||||||| | |||||| |||| ||| ||||||||||||||||||||||||||    
T  647253 tcttcgagtctgactcatctactctagtgcaagctctatcgtctccgggccatggtgatt 647194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 349 - 515
Target Start/End: Original strand, 55199526 - 55199692
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||||||||||||||||||||||   || ||| ||||||| ||| ||||||  | ||  |||| ||||  | ||||||||||| |||| |||| ||    
T  55199526 aatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgttgttggaaacagatgggaccgggttgtcttcaagtccgactcag 55199625  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    ||||||  ||| |||  ||||||||| |||| ||||||||||   || | | |||||||||||||||    
T  55199626 ctactctggtgcaagcgctatcgtctacgggtcatggtgattcggaattttatgctattgtttctag 55199692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 420
Target Start/End: Complemental strand, 647406 - 647312
Alignment:
Q  327 ctcaaatgaaatggcagtggac-aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatgg 420  Q
    |||||| |||||||||| || | |||||||||||| |||||||||||||| |||| ||| ||||||  ||| ||||||| |||| ||||| ||||    
T  647406 ctcaaacgaaatggcagcgggctaatatgacagttatggagggggaggcagcagccttactcgatgtcattcactttgctgatgtgaacagatgg 647312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 11027397 - 11027359
Alignment:
Q  8 gacatgacacatgtgaactagataaaatggattgattat 46  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  11027397 gacatgacacatgtgaaccagataaaatggattgattat 11027359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 490
Target Start/End: Original strand, 24176860 - 24176926
Alignment:
Q  424 tgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatt 490  Q
    |||||||||||||||||||||  | |||||| |||| ||| ||||||||||| ||| ||||||||||    
T  24176860 tgggttgtcttcgagtctgacacaactactctagtgcaagctctatcgtctctgggtcatggtgatt 24176926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 511
Target Start/End: Complemental strand, 27747739 - 27747695
Alignment:
Q  467 tatcgtctccgggccatggtgatttaaaaatctgtgctattgttt 511  Q
    |||||||||||||||||||||||| |||| ||| |||||||||||    
T  27747739 tatcgtctccgggccatggtgattcaaaattctatgctattgttt 27747695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 327 - 515
Target Start/End: Complemental strand, 29201150 - 29200961
Alignment:
Q  327 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 425  Q
    |||||| |||||| ||| |||||| ||||||||||||||||||||||| | ||  |||| | ||||  ||| ||||||| |||| ||||| |||||   |    
T  29201150 ctcaaacgaaatgacagcggacaaatatgacagttttggagggggaggtagcatgtttacttgatgtcattcactttgctgatgtgaacagatggaaacg 29201051  T
Q  426 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||||||||||||||||| |||||||| |||| ||| ||||||||||| |||||||||||||| | || ||| |||||||||||||||    
T  29201050 ggttgtcttcgagtctgactcagctactctagtgcaagctctatcgtctctgggccatggtgattcagaattctatgctattgtttctag 29200961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 327 - 515
Target Start/End: Original strand, 16731925 - 16732114
Alignment:
Q  327 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 425  Q
    |||||| |||||||||| || ||| ||||||||| |||||||||||||||  ||| ||| |||| || ||| ||| ||| |||| ||||| ||||| | |    
T  16731925 ctcaaacgaaatggcagagggcaaatatgacagtattggagggggaggcagtagccttactcgaggccattcactctgctgatgcgaacagatggaaccg 16732024  T
Q  426 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
     |||||||||||||| ||||   |||||| |||| ||| |||||| ||||||||||||||||||| | || ||| |||||||||||||||    
T  16732025 agttgtcttcgagtccgactcgtctactctagtgcaagctctatcatctccgggccatggtgattcagaattctctgctattgtttctag 16732114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 327 - 515
Target Start/End: Original strand, 17710059 - 17710248
Alignment:
Q  327 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 425  Q
    |||||| |||||||||| || ||| ||||||||| |||||||||||||||  ||| ||| |||| || ||| ||| ||| |||| ||||| ||||| | |    
T  17710059 ctcaaacgaaatggcagagggcaaatatgacagtattggagggggaggcagtagccttactcgaggccattcactctgctgatgcgaacagatggaaccg 17710158  T
Q  426 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
     |||||||||||||| ||||   |||||| |||| ||| |||||| ||||||||||||||||||| | || ||| |||||||||||||||    
T  17710159 agttgtcttcgagtccgactcgtctactctagtgcaagctctatcatctccgggccatggtgattcagaattctctgctattgtttctag 17710248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 349 - 515
Target Start/End: Original strand, 22289256 - 22289422
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||||||||||||||||||||     || ||| ||||||| ||| ||||||| | || ||||||||||  | ||| |||||||||||| |||| ||    
T  22289256 aatatgacagttttggagggggaggtggttgccttactcgatgccattcactttgccgttgggaacaaatgggaccgggctgtcttcgagtccgactcag 22289355  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||| |||| |||  ||||||||||||||||||||||||| | || | | |||||||||||||||    
T  22289356 ctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctag 22289422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 515
Target Start/End: Complemental strand, 9328774 - 9328608
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||| ||||||||||||||||||  ||| ||| ||| ||||||| ||||||| ||||  |||| ||||  | |||||||||| ||||||||||  |    
T  9328774 aatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatgggaccgggttgtcttggagtctgactctg 9328675  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
     ||||| |||| ||| |||||||||  |||| |||||| ||| | || ||| |||  ||||||||||    
T  9328674 atactctagtgcaagctctatcgtcagcgggacatggtaattcagaattctatgcgtttgtttctag 9328608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 515
Target Start/End: Original strand, 16098568 - 16098671
Alignment:
Q  412 aacaaatggatctgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgttt 511  Q
    |||||||||  | |||||||||||||||| |||| | |||||| |||  ||| || ||||||||||||||||||||||| | || ||| || ||||||||    
T  16098568 aacaaatgggaccgggttgtcttcgagtccgactcatctactctagtacaagctccatcgtctccgggccatggtgattcagaattctatgatattgttt 16098667  T
Q  512 ctag 515  Q
    ||||    
T  16098668 ctag 16098671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 511
Target Start/End: Complemental strand, 30493705 - 30493620
Alignment:
Q  426 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgttt 511  Q
    ||||||||||||||| |||| |  ||||| |||| ||| |||||||||| ||||||||||||||| | || | | |||||||||||    
T  30493705 ggttgtcttcgagtccgactcaattactctagtgcaagctctatcgtcttcgggccatggtgattcagaattttatgctattgttt 30493620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 515
Target Start/End: Original strand, 3601743 - 3601833
Alignment:
Q  425 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    ||||||| |||||||| |||| | |||||| |||| ||| | ||||||||| || ||||||||||| | || | | |||||||||||||||    
T  3601743 gggttgttttcgagtccgactcatctactctagtgcaagctttatcgtctctggaccatggtgattcagaattttatgctattgtttctag 3601833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 515
Target Start/End: Original strand, 24139139 - 24139212
Alignment:
Q  442 gacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||| |||||||| |||| ||| ||| ||||||||||| |||| |||||| ||| | | |||||||||||||||    
T  24139139 gactcagctactctagtgcaagctctgtcgtctccgggtcatgttgatttgaaattttatgctattgtttctag 24139212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 349 - 515
Target Start/End: Complemental strand, 37246024 - 37245858
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||||||||||||||||||||||  ||| ||| ||||||||||| |||||||  ||| ||||| ||||  | |||||||||||||||||||||  |    
T  37246024 aatatgacagttttggagggggaggcagtagccttactcgatgctattcactttgcttatgtgaacagatgggaccgggttgtcttcgagtctgactctg 37245925  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||  |||| ||| ||| ||||||| |||||||||||||| | || ||| |||||||||||||||    
T  37245924 ctactttagtgcaagctctttcgtctctgggccatggtgattcagaattctatgctattgtttctag 37245858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 349 - 515
Target Start/End: Complemental strand, 29655838 - 29655672
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||| ||||||||||| ||||||  ||| ||| ||||||  ||| ||||||| |||| ||||| ||||| | | |||||||||||||||||||  |    
T  29655838 aatatgactgttttggagggagaggcagtagccttactcgatgtcattcactttgctgatgtgaacagatggaaccgtgttgtcttcgagtctgactacg 29655739  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||| |||| ||| |||||| ||| ||||||||||||||| | || ||| || ||||||||||||    
T  29655738 ctactctagtgcaagctctatcatcttcgggccatggtgattcagaattctatgttattgtttctag 29655672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 328 - 515
Target Start/End: Complemental strand, 43840501 - 43840312
Alignment:
Q  328 tcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagc-tttattcgatgctatttactttgcagatgagaacaaatggatctg 425  Q
    ||||| |||||||||| |||||| ||||||||| |||||||||||| ||||| | |||| ||||||| ||| ||||||| |||| |||||||||   | |    
T  43840501 tcaaacgaaatggcagcggacaaatatgacagtgttggagggggagacaacaacctttactcgatgccattcactttgctgatgtgaacaaatgagaccg 43840402  T
Q  426 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    | ||||||||||||  |||| |||||||| | || ||| |||||||||| ||| |||||||||||   || ||| |||||||||||||||    
T  43840401 gtttgtcttcgagttcgactcagctactctaatgcaagctctatcgtcttcggaccatggtgattcggaattctatgctattgtttctag 43840312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 349 - 511
Target Start/End: Complemental strand, 32577220 - 32577058
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||| |||||||||||||||| |  ||| ||| ||| ||||||||||||||| ||||  |||| ||||  |||||||||||||||||||||||  |    
T  32577220 aatatgactgttttggagggggaggtactagccttactcgctgctatttactttgctgatgtaaacatatgggactgggttgtcttcgagtctgactctg 32577121  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgttt 511  Q
    |||||| |||| ||| || ||||||  |||| |||||||||| | || ||| ||| |||||||    
T  32577120 ctactctagtgcaagctcaatcgtcagcgggacatggtgattcagaattctatgcgattgttt 32577058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 515
Target Start/End: Original strand, 49951305 - 49951494
Alignment:
Q  327 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 425  Q
    |||||| |||||||||| || ||| ||||||||| |||||||||||||||  ||| ||| |||| ||  || ||||||| |||| ||||| ||||| | |    
T  49951305 ctcaaacgaaatggcagcgggcaaatatgacagtattggagggggaggcagtagccttactcgaggcccttcactttgctgatgcgaacagatggaaccg 49951404  T
Q  426 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
     |||||||||||||| ||||   |||||| |||| ||| | |||| ||| |||||| |||||||| | || ||| |||||||||||||||    
T  49951405 agttgtcttcgagtccgactcgtctactctagtgcaagctttatcatcttcgggccgtggtgattcagaattctctgctattgtttctag 49951494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 490
Target Start/End: Original strand, 56065644 - 56065785
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||||||||||||||||||||||   || ||| ||||||| ||| ||||||| | || ||| | ||||  | |||||||||||||||| |||| ||    
T  56065644 aatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgctgttgggaatatatgggaccgggttgtcttcgagtccgactcag 56065743  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatt 490  Q
    |||||| |||| |||  ||||| ||||| | |||||||||||    
T  56065744 ctactctagtgcaagcgctatcatctccagaccatggtgatt 56065785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 515
Target Start/End: Original strand, 2064868 - 2065034
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    ||||||||||| ||| |||||||||||  ||| ||| |||| ||  || ||||||| |||||||||| |||||   |||||||||| ||||| |||| |     
T  2064868 aatatgacagtattgaagggggaggcagtagccttactcgacgcccttcactttgctgatgagaacagatggagtcgggttgtctttgagtcggactcat 2064967  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||| ||   ||| |||||||||||| || ||||||||||  ||| | | |||||||||||||||    
T  2064968 ctactctagcccaagctctatcgtctccaggtcatggtgattcgaaattatatgctattgtttctag 2065034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 515
Target Start/End: Original strand, 28426198 - 28426364
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||| ||||||||||||||||||  ||| ||| ||| ||||||| ||||||| ||||  |||| ||||  | ||||||||||| |||||||||  |    
T  28426198 aatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatgggaccgggttgtcttcaagtctgactctg 28426297  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
     ||||| ||||  || |||||||||  |||| |||||| ||||| || | | ||| |||||||||||    
T  28426298 atactctagtgccagctctatcgtcagcgggacatggtaatttagaattatatgcgattgtttctag 28426364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 515
Target Start/End: Complemental strand, 28537980 - 28537793
Alignment:
Q  327 ctcaaatgaaatggcagtgg-acaatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 425  Q
    |||||| |||||||||| || | ||||||| |||||  ||||||||||||  ||| ||| |||| ||  || ||||||  |||| ||||| ||||  | |    
T  28537980 ctcaaacgaaatggcagcgggaaaatatgatagttt--gagggggaggcagtagccttactcgaggcccttcactttgttgatgcgaacagatgggaccg 28537883  T
Q  426 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||| ||| |||| |||| | |||||  |||| ||| ||||||||||| |||||||||||||| |||| ||| |||||||||||||||    
T  28537882 ggttgtgttcaagtccgactcatctactttagtgcaagctctatcgtctctgggccatggtgattcaaaattctatgctattgtttctag 28537793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 515
Target Start/End: Complemental strand, 49119572 - 49119406
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||| ||||||||||||||||||  ||| ||| ||| ||||||| ||||||| ||||  |||| ||||  | ||||||||||| |||||||||  |    
T  49119572 aatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatgggaccgggttgtcttcaagtctgactctg 49119473  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
     ||||| ||||  || |||||||||  |||| |||||| ||||| || | | ||| |||||||||||    
T  49119472 atactctagtgccagctctatcgtcagcgggacatggtaatttagaattatatgcgattgtttctag 49119406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 515
Target Start/End: Complemental strand, 51735143 - 51734978
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||||||||||||||||||||||  ||| ||| ||||||| ||| ||||||| |||| ||| | || |  | | |||||||||||||| | ||       
T  51735143 aatatgacagttttggagggggaggcagtagccttactcgatgccattcactttgctgatgtgaatagataggac-gagttgtcttcgagtcaggctcct 51735045  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||| |||| ||| ||||||||||| || ||||||||||| | || ||| || ||||||||||||    
T  51735044 ctactctagtgcaagctctatcgtctctggaccatggtgattcataattctatgatattgtttctag 51734978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 515
Target Start/End: Original strand, 55735024 - 55735190
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    ||||||||||| |||||||||||||||  ||| ||| |||| ||  || ||||||  | || ||||| ||||| | ||||| | |||||||| || | |     
T  55735024 aatatgacagtattggagggggaggcagtagccttactcgaggcccttcactttgttgttgcgaacacatggaaccgggttattttcgagtccgattcat 55735123  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||| |||| ||| |||||||||| ||| ||||||||||| | || ||| |||||||||||||||    
T  55735124 ctactctagtgcaagctctatcgtcttcggaccatggtgattcagaattctatgctattgtttctag 55735190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 511
Target Start/End: Complemental strand, 26422762 - 26422612
Alignment:
Q  361 ttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatgg-atctgggttgtcttcgagtctgacttagctactcgagtg 459  Q
    |||||| ||||||||  ||| ||| ||||||||||||||||||| ||||  |||| |||| ||| |||||||||||||||||||||  | ||||| ||||    
T  26422762 ttggagagggaggcagtagccttactcgatgctatttactttgctgatgtaaacagatgggatc-gggttgtcttcgagtctgactctgatactctagtg 26422664  T
Q  460 taaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgttt 511  Q
     ||| |||||||||  |||| ||| |||||| | || ||| ||| |||||||    
T  26422663 caagctctatcgtcagcgggacatagtgattcagaattctatgcgattgttt 26422612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 51259624 - 51259535
Alignment:
Q  426 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    ||||||||||||||| |||| |||||||| |||| |||  ||||||||| ||||||||||||||| | || | | || ||||||||||||    
T  51259624 ggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtcttcgggccatggtgattcagaattttatgttattgtttctag 51259535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 490
Target Start/End: Original strand, 21321542 - 21321685
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||||||||||||||||||| ||| ||| ||| |||| ||  || ||||| | ||||  |||| ||||  | |||||||||||||||| |||| |     
T  21321542 aatatgacagttttggagggggagacaatagccttactcgaggcccttcacttttctgatgctaacagatgggaccgggttgtcttcgagtccgactcat 21321641  T
Q  449 ctactcgagtgtaa--ggtctatcgtctccgggccatggtgatt 490  Q
    |||||| |||| ||  | ||||| ||||| ||| ||||||||||    
T  21321642 ctactctagtgcaattgctctattgtctcagggtcatggtgatt 21321685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 327 - 515
Target Start/End: Original strand, 25730800 - 25730989
Alignment:
Q  327 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 425  Q
    |||||| |||||||||| || ||| |||||||||||||||||||||||||  ||| ||| |||| ||  || ||||||| |||| ||||| ||||  |||    
T  25730800 ctcaaacgaaatggcagcgggcaaatatgacagttttggagggggaggcagtagccttactcgaggcccttcactttgctgatgcgaacagatgggactg 25730899  T
Q  426 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
     |||||||||||||| |||| | |||||| |||| ||| ||||||||||| ||| |||||||||| | || ||| || ||||||||||||    
T  25730900 agttgtcttcgagtccgactcatctactctagtgcaagctctatcgtctcagggtcatggtgattaagaattctatgttattgtttctag 25730989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 349 - 512
Target Start/End: Original strand, 8388101 - 8388264
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||||||||||||||||||||||   || ||| ||||||| ||| ||||||| | || ||||| ||||  | |||||||||||||||| |||| ||    
T  8388101 aatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgcggttgggaacagatgggaccgggttgtcttcgagtccgactcag 8388200  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttc 512  Q
    |||||| |||| |||  ||||||||||| ||||||||||||| | || | | ||||||||||||    
T  8388201 ctactctagtgcaagcgctatcgtctccaggccatggtgattcagaattttatgctattgtttc 8388264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 349 - 515
Target Start/End: Original strand, 20204970 - 20205136
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    ||||||||||| |||||||||||||||  ||| ||| |||| || ||| ||||||  | || ||||| ||||| | | |||||||||||||| |||| |     
T  20204970 aatatgacagtattggagggggaggcagtagccttactcgaggccattcactttgttgttgcgaacagatggaaccgagttgtcttcgagtccgactcat 20205069  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||| |||| ||| |||||| |||||||| |||||||||| |||| ||| |||||||||||||||    
T  20205070 ctactctagtgcaagctctatcctctccgggtcatggtgattcaaaattctatgctattgtttctag 20205136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 327 - 515
Target Start/End: Complemental strand, 15988944 - 15988755
Alignment:
Q  327 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 425  Q
    |||||| |||||||||| |||||| |||||||||||||||||||||||||  | | ||| |||| ||  |||||||||| |||| ||||| ||||  | |    
T  15988944 ctcaaacgaaatggcagcggacaaatatgacagttttggagggggaggcagtaaccttactcgaggccctttactttgctgatgcgaacatatgggaccg 15988845  T
Q  426 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||||||| |||| | || |||||||| |||| ||  |||||||||| | |||||||||||||   || ||| || ||||||||||||    
T  15988844 ggttgtcttcaagtccgtctcagctactctagtgcaatctctatcgtcttcaggccatggtgattcggaattctatgttattgtttctag 15988755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 349 - 490
Target Start/End: Complemental strand, 26597629 - 26597488
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    ||||||||| |||||||||||||||||   || ||| ||||||| ||| ||||||||| || ||| | |||   | |||||||||||||||| |||| ||    
T  26597629 aatatgacaattttggagggggaggcagttgccttactcgatgccattcactttgcagttgggaatagatgagaccgggttgtcttcgagtccgactcag 26597530  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatt 490  Q
    |||||| |||| |||  |||||||||||||||||||||||||    
T  26597529 ctactctagtgcaagcgctatcgtctccgggccatggtgatt 26597488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 349 - 512
Target Start/End: Complemental strand, 27533078 - 27532915
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    ||||| |||||||||||||||||||||| ||||||||||||||  ||| ||||||| |||| ||| | ||||  | ||||||| |||||||| ||||| |    
T  27533078 aatataacagttttggagggggaggcaatagctttattcgatgtcattcactttgctgatgtgaatagatgggaccgggttgttttcgagtccgactttg 27532979  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttc 512  Q
    || ||  |||| |   | ||||||||||||| |||||||||| | || ||| ||||||||||||    
T  27532978 cttctttagtgcagactttatcgtctccgggtcatggtgattcagaattctttgctattgtttc 27532915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 349 - 515
Target Start/End: Complemental strand, 41940908 - 41940743
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||||||||||||||||||| ||| ||| ||| || |||  ||| |||||||  ||| |||||| |||| | |||||||||||||||| |||| |     
T  41940908 aatatgacagttttggagggggagacaatagccttactcaatgtcattcactttgctcatgtgaacaactggacc-gggttgtcttcgagtccgactcaa 41940810  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||| |||| ||  ||||||||||| || |||| |||||| | || ||| |||||||||||||||    
T  41940809 ctactctagtgcaaactctatcgtctctggaccattgtgattcagaattctatgctattgtttctag 41940743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 515
Target Start/End: Original strand, 4268114 - 4268280
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||||||||||||||||||||||  ||| ||| | || ||  || ||||||| ||||  ||||  |||  | ||||| |||||||||| |||| |     
T  4268114 aatatgacagttttggagggggaggcagtagccttactagaggcccttcactttgctgatgctaacaggtgggaccgggttttcttcgagtccgactcat 4268213  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||| |||| ||| |||||| |||||||||||||||||||   || ||| |||||||||||||||    
T  4268214 ctactctagtgcaagctctatcatctccgggccatggtgattcggaattctatgctattgtttctag 4268280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 515
Target Start/End: Original strand, 12660308 - 12660497
Alignment:
Q  327 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 425  Q
    |||||| |||||||||| || ||| ||||||||| || ||| ||||||||  ||  ||| ||||||  ||| |||||||  ||| |||||||||   | |    
T  12660308 ctcaaacgaaatggcagcgggcaaatatgacagtgttagagcgggaggcagtagtcttactcgatgtcattcactttgctaatgtgaacaaatgagaccg 12660407  T
Q  426 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
     ||| || |||||||||||| |||||||| |||| ||| |||||||||| ||||||| ||||||| | || ||| || ||||||||||||    
T  12660408 tgttatcgtcgagtctgactcagctactctagtgcaagctctatcgtcttcgggccacggtgattcagaattctatgatattgtttctag 12660497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 486
Target Start/End: Complemental strand, 22767429 - 22767292
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||| ||||||||||||||||||  ||| ||| ||| ||||||| ||||||| ||||  |||| ||||  | ||||||||||||||| |||||  |    
T  22767429 aatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatgggaccgggttgtcttcgagtttgactctg 22767330  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggt 486  Q
     ||||| |||| ||| |||||||||  |||| ||||||    
T  22767329 atactctagtgcaagctctatcgtcagcgggacatggt 22767292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 515
Target Start/End: Original strand, 27292458 - 27292615
Alignment:
Q  358 gttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagctactcgag 457  Q
    |||||| |||||||||||| ||| ||| | |||||  || ||||||| ||||| |||| ||||  | |||||||||||||||  |||| | || ||| ||    
T  27292458 gttttgaagggggaggcaatagccttactagatgcccttcactttgctgatgataacagatgggaccgggttgtcttcgagttcgactcatctgctctag 27292557  T
Q  458 tgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    || ||  |||||||||||| ||||||||||||||  || | | |||||||||||||||    
T  27292558 tgcaaactctatcgtctccaggccatggtgatttggaattttatgctattgtttctag 27292615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 490
Target Start/End: Complemental strand, 11375685 - 11375544
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||||||||||||||||||| ||  ||| ||| |||| ||  || | ||||| ||||  || | ||||  | |||||||||| |||||||| | |     
T  11375685 aatatgacagttttggagggggagacagtagccttactcgaggcccttcattttgcggatgcaaatatatgggaccgggttgtctttgagtctgattcat 11375586  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatt 490  Q
    ||| || |||| ||| |||||||||||||| |||||||||||    
T  11375585 ctattctagtgcaagctctatcgtctccggtccatggtgatt 11375544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 515
Target Start/End: Complemental strand, 34652426 - 34652260
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatgg-atctgggttgtcttcgagtctgactta 447  Q
    ||||||||||| ||| | ||||||  || | | ||| ||||||| ||| ||||||| |||| ||||| |||| ||| |||||||||||||| | ||||      
T  34652426 aatatgacagtgttgtaaggggagataataaccttactcgatgccattcactttgccgatgtgaacagatgggatc-gggttgtcttcgagcccgactcg 34652328  T
Q  448 gctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
     |||||| |||| ||| |||| |||||| |||||||||||||| | || | | || ||||||||||||    
T  34652327 actactctagtgcaagctctaccgtctctgggccatggtgattcagaattatatgttattgtttctag 34652260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 32632606 - 32632671
Alignment:
Q  425 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatt 490  Q
    |||||||||| |||||||||| | |||||  |||||||| | ||||||||||| ||||| ||||||    
T  32632606 gggttgtctttgagtctgactcatctactttagtgtaagctttatcgtctccgagccatagtgatt 32632671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 349 - 492
Target Start/End: Original strand, 7127238 - 7127381
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    ||||||| ||||||||||||||||| |  ||| ||| ||||||||||| ||||||| |||| ||||| ||||  | |||||| ||||||||||||||  |    
T  7127238 aatatgaaagttttggagggggaggtagtagccttactcgatgctattcactttgctgatgtgaacagatgggaccgggttgccttcgagtctgactatg 7127337  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgattta 492  Q
    |||||  |||| ||| ||| ||||||||||||||||||||||||    
T  7127338 ctactttagtgcaagctctttcgtctccgggccatggtgattta 7127381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 349 - 515
Target Start/End: Complemental strand, 185762 - 185597
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    ||||||||||||||||||||| ||| |  ||| ||| ||||| ||||| ||||||  |||| ||| | ||||| | ||||||||| |||||||||||  |    
T  185762 aatatgacagttttggagggg-aggaagtagccttactcgatactattcactttgttgatgtgaatagatggaaccgggttgtctacgagtctgactctg 185664  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||  |||| ||| ||| |||||||||| ||||||||||| | || ||| |||||||||||||||    
T  185663 ctactttagtgcaagctctttcgtctccggaccatggtgattcagaattctatgctattgtttctag 185597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 349 - 515
Target Start/End: Original strand, 23853947 - 23854113
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||||||||||||||| ||||||  ||| ||| | || || ||| ||||||  ||||  |||| |||   ||| |||||||||||||| |||| |     
T  23853947 aatatgacagttttggagggtgaggcagtagccttacttgaggccattcactttgttgatgctaacagatgagactgagttgtcttcgagtccgactcat 23854046  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    | |||| |||| ||| |||||||||||||||||||||||||| | || ||| |||||||||||||||    
T  23854047 caactctagtgcaagctctatcgtctccgggccatggtgattcagaattctatgctattgtttctag 23854113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 490
Target Start/End: Complemental strand, 478228 - 478087
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||||||||||||||||||||||  ||| ||| ||||||| ||| |||||||  ||| ||| | ||||  | ||||| ||||||| |||||||       
T  478228 aatatgacagttttggagggggaggcagtagccttactcgatgccattcactttgctaatgtgaatagatgggaccgggttatcttcgaatctgactcta 478129  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatt 490  Q
    |||||| |||| ||| |||||||||||||||  |||||||||    
T  478128 ctactctagtgcaagctctatcgtctccgggttatggtgatt 478087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 490
Target Start/End: Complemental strand, 8451295 - 8451154
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    ||||||||||| |||||||||||||||  ||||||| ||||| | ||| |||| || |||| ||||  ||||  | ||||||||||||||||||||| |     
T  8451295 aatatgacagtgttggagggggaggcagtagctttactcgattccattcacttcgctgatgtgaacggatgggaccgggttgtcttcgagtctgactcat 8451196  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatt 490  Q
    |||||  |||| ||| | |||||||||| || ||||||||||    
T  8451195 ctactttagtgcaagctttatcgtctccaggtcatggtgatt 8451154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 425 - 515
Target Start/End: Complemental strand, 598333 - 598243
Alignment:
Q  425 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    ||||||||||| |||| ||||||||||||| |||| ||| |||||||||| | || ||||||||||  ||  ||| |||||||||||||||    
T  598333 gggttgtcttcaagtcggacttagctactctagtgcaagctctatcgtcttcaggtcatggtgattcgaagttctatgctattgtttctag 598243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 13415015 - 13415064
Alignment:
Q  327 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggca 375  Q
    |||||| |||||||||| |||||| |||||||||||||||||||||||||    
T  13415015 ctcaaacgaaatggcagcggacaaatatgacagttttggagggggaggca 13415064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 511
Target Start/End: Complemental strand, 40588826 - 40588740
Alignment:
Q  425 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgttt 511  Q
    |||||||||| |||||||| | | |||||| |||||||  ||||||||| |||||||||| |||||   || ||| |||||||||||    
T  40588826 gggttgtctttgagtctgattcatctactctagtgtaaactctatcgtccccgggccatgatgattctgaattctatgctattgttt 40588740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 375
Target Start/End: Original strand, 9496791 - 9496823
Alignment:
Q  343 gtggacaatatgacagttttggagggggaggca 375  Q
    |||||||||||||||||||||||||| ||||||    
T  9496791 gtggacaatatgacagttttggagggtgaggca 9496823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 352 - 515
Target Start/End: Complemental strand, 15606163 - 15606000
Alignment:
Q  352 atgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagcta 451  Q
    ||||||||||||||||||||||||  ||| ||| ||||||| ||| ||||||  |||| ||||||||||  | ||||||||||| |||| |||| |||||    
T  15606163 atgacagttttggagggggaggcagtagccttactcgatgccattcactttgttgatgggaacaaatgggaccgggttgtcttcaagtccgactcagcta 15606064  T
Q  452 ctcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    ||| |||| ||| |||||||||||  || |||||||||| | ||  || |||||||||||||||    
T  15606063 ctctagtgcaagctctatcgtctctaggtcatggtgattcagaacactatgctattgtttctag 15606000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 327 - 515
Target Start/End: Original strand, 28107131 - 28107320
Alignment:
Q  327 ctcaaatgaaatggcagtggaca-atatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatgg-atct 424  Q
    |||||| |||||||||| ||||| ||||||||||||||||||||||||||  ||| ||| | ||||| ||| |||||||| ||  ||| | |||| |||     
T  28107131 ctcaaacgaaatggcagcggacagatatgacagttttggagggggaggcagtagccttacttgatgccattcactttgcaaatatgaatagatgggatca 28107230  T
Q  425 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
     | |||||||||||||| |||  ||||||| |||| ||| |||||||||||||||||||||||||| | || ||| || ||||||||||||    
T  28107231 cg-ttgtcttcgagtctaactccgctactctagtgcaagctctatcgtctccgggccatggtgattcagaattctatgttattgtttctag 28107320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 349 - 515
Target Start/End: Complemental strand, 30802163 - 30801997
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||||||||||| ||||||||||  ||| ||| | ||||| |||||||||||||||| ||| ||||||  || ||||||||||||||| || | ||    
T  30802163 aatatgacagttttggtgggggaggcagtagccttactagatgccatttactttgcagatgtgaaaaaatgggactaggttgtcttcgagtccgattcag 30802064  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||  |||| ||| |||||||| |||| |||||||||| ||  || ||| || ||||||||||||    
T  30802063 ctactttagtgcaagctctatcgtttccgagccatggtgacttggaattctatgttattgtttctag 30801997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 349 - 515
Target Start/End: Complemental strand, 19691051 - 19690885
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||| |||||||| |||||||||| ||| ||||||||||  ||| ||||||| |||| ||||| |||   | | ||||||||||||||||||| ||    
T  19691051 aatatgaccgttttggaaggggaggcaatagccttattcgatgtcattcactttgctgatgtgaacagatgtgaccgagttgtcttcgagtctgactcag 19690952  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||  |||| ||| ||||||||||| | | |||||||||||  || ||| ||  |||||||||||    
T  19690951 ctactttagtgcaagctctatcgtctctgagtcatggtgatttggaattctatgtcattgtttctag 19690885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 515
Target Start/End: Original strand, 14680154 - 14680343
Alignment:
Q  327 ctcaaatgaaatggcagtgg-acaatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 425  Q
    ||||||||||||||||| || | ||||||||||| |||||||||||||||  ||| ||| |||| ||  || ||| ||| ||||  |||| ||||| | |    
T  14680154 ctcaaatgaaatggcagcgggaaaatatgacagtattggagggggaggcagtagccttactcgaggcccttcactctgctgatgcaaacagatggaaccg 14680253  T
Q  426 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
     |||||||| || || ||||   |||||| | || ||| |||||| |||||||||  |||||||| |||| ||| |||||||||||||||    
T  14680254 agttgtctttgattccgactcgtctactctattgcaagctctatcatctccgggcagtggtgattcaaaattctctgctattgtttctag 14680343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 490
Target Start/End: Complemental strand, 15053347 - 15053206
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    ||||||| ||| |||||||||||||||  ||| ||| ||||||| |||  | |||| || | ||| |||||   |  ||||||||||||||| |||| ||    
T  15053347 aatatgatagtgttggagggggaggcagtagccttactcgatgccattcgccttgctgacgtgaaaaaatgagacaaggttgtcttcgagtccgactcag 15053248  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatt 490  Q
    |||||| |||| ||   ||||||||| |||||||||||||||    
T  15053247 ctactctagtgcaaacgctatcgtcttcgggccatggtgatt 15053206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 29368251 - 29368201
Alignment:
Q  327 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaa 376  Q
    |||||| |||||||||| ||| || ||||||||||||||||||||||||||    
T  29368251 ctcaaaagaaatggcagcggataaatatgacagttttggagggggaggcaa 29368201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 349 - 515
Target Start/End: Original strand, 25682666 - 25682832
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    ||||||||||| |||||||||||||||  ||| ||| ||||||  ||| |||||||  ||| ||||| ||||  | ||| ||||||||||| ||||| ||    
T  25682666 aatatgacagtgttggagggggaggcagtagccttactcgatgtcattcactttgctaatgtgaacagatgggaccgggctgtcttcgagtttgactcag 25682765  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||| |||  ||| ||||||||||||||||||  |||||||| || ||| | |||||||||||||    
T  25682766 ctactctagtacaagctctatcgtctccgggccacagtgatttagaattctatactattgtttctag 25682832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 335 - 515
Target Start/End: Original strand, 44527253 - 44527434
Alignment:
Q  335 aaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtct 433  Q
    ||||||||| |||||| |||||||||||||||||||||||||  ||| ||| | || ||  || ||||||| ||||  |||| ||||  | |||||||||    
T  44527253 aaatggcagcggacaaatatgacagttttggagggggaggcagtagccttactagaggcccttcactttgctgatgctaacagatgggaccgggttgtct 44527352  T
Q  434 tcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    ||||||| |||| | ||||||  ||| ||| |||||| |||||||||||||||||||   || ||| |||||||||||||||    
T  44527353 tcgagtccgactcatctactcttgtgcaagctctatcatctccgggccatggtgattcggaattctatgctattgtttctag 44527434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 349 - 515
Target Start/End: Original strand, 36733711 - 36733877
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||| ||||||||||||||||||||  ||  ||| || ||| |||| ||||||| |||| ||||||||||  | |||||||||||||||||||||       
T  36733711 aatatggcagttttggagggggaggcagtagtcttactcaatgttattcactttgctgatgtgaacaaatgggaccgggttgtcttcgagtctgactcta 36733810  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
      |||| |||| ||| | |||||||||||||||||| ||||| | || ||| || ||||||||||||    
T  36733811 taactctagtgcaagctatatcgtctccgggccatgatgattcataattctatgttattgtttctag 36733877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 349 - 515
Target Start/End: Original strand, 44602767 - 44602933
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    ||||||||| |||||||||||||| ||  ||  ||| ||||||  ||| ||||| | |||| ||||| |||   | |||||| |||||||||| |||  |    
T  44602767 aatatgacaattttggagggggagacattagtcttactcgatgtcattcactttactgatgtgaacagatgagaccgggttgccttcgagtctaactccg 44602866  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||| |||| ||| |||||| ||||||||||||||||||| |||| ||| |||||||||||||||    
T  44602867 ctactctagtgcaagctctatcatctccgggccatggtgattcaaaattctatgctattgtttctag 44602933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 515
Target Start/End: Complemental strand, 48949896 - 48949730
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    ||||||| |||||||||||||||||||   || ||| ||||||| ||| ||||||  | || ||||| ||||  | |||||||||||||||   ||| ||    
T  48949896 aatatgaaagttttggagggggaggcagttgccttactcgatgcgattcactttgttgttgggaacagatgggaccgggttgtcttcgagttcaactcag 48949797  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||| |||| |||  |||||||||||||||||||||||||   || | | |||||||||||||||    
T  48949796 ctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgctattgtttctag 48949730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 490
Target Start/End: Original strand, 51113330 - 51113471
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    ||||| || ||||||||||||||||||   || ||| ||||||  ||| ||||||  | || ||||| ||||  | |||||||||||||||| |||| ||    
T  51113330 aatataaccgttttggagggggaggcagttgccttactcgatgtcattcactttgttgttgggaacagatgggaccgggttgtcttcgagtccgactcag 51113429  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatt 490  Q
    |||||| |||| |||  |||||||||| ||||||||||||||    
T  51113430 ctactctagtgcaagcgctatcgtctctgggccatggtgatt 51113471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 2885314 - 2885379
Alignment:
Q  425 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatt 490  Q
    |||||||||||||||| |||| |||||||| |||| ||| |||||||||| ||||| |||||||||    
T  2885314 gggttgtcttcgagtcagactcagctactctagtgcaagctctatcgtcttcgggctatggtgatt 2885379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 515
Target Start/End: Original strand, 5609430 - 5609520
Alignment:
Q  425 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||||||||||||  |||| | |||||| |||| ||  ||||||||||| ||| |||||||||| | || ||| |||||||||||||||    
T  5609430 gggttgtcttcgagttcgactcatctactctagtgcaaactctatcgtctcagggtcatggtgattcagaattctatgctattgtttctag 5609520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 454
Target Start/End: Original strand, 48166229 - 48166357
Alignment:
Q  327 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaat-ggatct 424  Q
    ||||||||||||||||| |  ||| |||||||||||||||| ||||| ||| ||| ||| ||||||  ||| |||||||  ||| ||| | || |||||     
T  48166229 ctcaaatgaaatggcagcgagcaaatatgacagttttggagtgggagacaatagccttactcgatgtcattcactttgcttatgtgaatatatgggatc- 48166327  T
Q  425 gggttgtcttcgagtctgacttagctactc 454  Q
    ||||||||||||||||||| | ||||||||    
T  48166328 gggttgtcttcgagtctgattcagctactc 48166357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 327 - 512
Target Start/End: Original strand, 88551 - 88737
Alignment:
Q  327 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 425  Q
    |||||||||||||||| ||| ||| |||||||||||||||||||||||||  ||| ||| |||| ||  || ||||||  ||||  |||| ||||  | |    
T  88551 ctcaaatgaaatggcaatgggcaaatatgacagttttggagggggaggcagtagccttactcgaggcccttcactttgttgatgctaacagatgggaccg 88650  T
Q  426 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttc 512  Q
    ||||||||||||||| |||| | |||||| |||| ||| |||||||||||  |  |||||||||| | || ||| ||||||||||||    
T  88651 ggttgtcttcgagtccgactcatctactctagtgcaagctctatcgtctcaagatcatggtgattcagaattctatgctattgtttc 88737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 515
Target Start/End: Complemental strand, 34696076 - 34695910
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||||||||||||||||||||||  ||| ||| || | || ||| ||||||| ||||  || | ||||    |||||||||||||||| ||||  |    
T  34696076 aatatgacagttttggagggggaggcagtagccttactcaaggccattcactttgctgatgtcaatagatgggaacgggttgtcttcgagtccgactccg 34695977  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||| |||| |||   ||||||||||||| |||||||||| | || | | |||||||||||||||    
T  34695976 ctactctagtgcaagcgttatcgtctccgggtcatggtgattcagaattttatgctattgtttctag 34695910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 515
Target Start/End: Complemental strand, 34718488 - 34718322
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    |||||||||||||||||||||||||||  ||| ||| || | || ||| ||||||| ||||  || | ||||    |||||||||||||||| ||||  |    
T  34718488 aatatgacagttttggagggggaggcagtagccttactcaaggccattcactttgctgatgtcaatagatgggaacgggttgtcttcgagtccgactccg 34718389  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||| |||| |||   ||||||||||||| |||||||||| | || | | |||||||||||||||    
T  34718388 ctactctagtgcaagcgttatcgtctccgggtcatggtgattcagaattttatgctattgtttctag 34718322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 430 - 515
Target Start/End: Original strand, 26198778 - 26198863
Alignment:
Q  430 gtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    ||||||||||| |||| |||||||| |||| ||| |||||||||||  || |||||||| || ||| ||| |||||||||||||||    
T  26198778 gtcttcgagtccgactcagctactctagtgcaagctctatcgtctctaggtcatggtgaattgaaattctatgctattgtttctag 26198863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 515
Target Start/End: Complemental strand, 1418079 - 1417987
Alignment:
Q  423 ctgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    ||||||||||||||||||||||| | |||||| |||  ||| ||||| ||||| || | ||||||||| | || ||| |||||||||||||||    
T  1418079 ctgggttgtcttcgagtctgactcatctactctagttcaagctctattgtctctggactatggtgattcagaattctatgctattgtttctag 1417987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 515
Target Start/End: Original strand, 9710046 - 9710136
Alignment:
Q  425 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||||||||||||||||||| | ||||| |||| ||| |||||||||  |||| |||||| ||| | || ||| ||| |||||||||||    
T  9710046 gggttgtcttcgagtctgactttgatactctagtgcaagctctatcgtcagcgggacatggtaattcataattctatgcaattgtttctag 9710136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 515
Target Start/End: Complemental strand, 12130810 - 12130644
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    ||||||| ||| |||||||||||||||  ||| ||| | || ||| || ||||||| ||||  || | |||||   ||||| ||||||||||||||| |     
T  12130810 aatatgatagtgttggagggggaggcagtagccttacttgaggctcttcactttgctgatgcaaatagatggaatcgggttatcttcgagtctgactcat 12130711  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctag 515  Q
    |||||| |||  ||| |||||| ||| |||| |||||||||| | || ||| ||||||| |||||||    
T  12130710 ctactctagtccaagctctatcatcttcgggacatggtgattcagaattctatgctattatttctag 12130644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 491
Target Start/End: Complemental strand, 13109964 - 13109899
Alignment:
Q  426 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgattt 491  Q
    ||||||||||||||| ||||   |||||| |||| ||| |||||||||| ||||||||||||||||    
T  13109964 ggttgtcttcgagtccgactcttctactctagtggaagctctatcgtcttcgggccatggtgattt 13109899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 515
Target Start/End: Original strand, 22845600 - 22845717
Alignment:
Q  398 actttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaat 497  Q
    ||||||| |||| ||||| ||||  | ||||||||||||||||  ||| | |||||| |||| ||| |||||||||||| |  |||||||||| | || |    
T  22845600 actttgctgatgcgaacagatgggaccgggttgtcttcgagtccaactaatctactctagtgcaagctctatcgtctccagatcatggtgattcagaatt 22845699  T
Q  498 ctgtgctattgtttctag 515  Q
    ||  ||||||||||||||    
T  22845700 ctaggctattgtttctag 22845717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 507
Target Start/End: Original strand, 14827173 - 14827253
Alignment:
Q  427 gttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctatt 507  Q
    |||||||| || |||||||||||||||| |||| ||| |||||||| |  ||| ||||||||||  ||| ||| |||||||    
T  14827173 gttgtctttgaatctgacttagctactctagtgcaagctctatcgtgtttgggtcatggtgattcgaaattctatgctatt 14827253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 490
Target Start/End: Original strand, 201 - 342
Alignment:
Q  349 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 448  Q
    ||||||||||||| |||||||||||||   || ||| ||||||| ||| ||||||| | || ||| | ||||  | |||||||||||||||| |||| ||    
T  201 aatatgacagtttgggagggggaggcagttgccttactcgatgccattcactttgctgttgggaatatatgggaccgggttgtcttcgagtccgactcag 300  T
Q  449 ctactcgagtgtaaggtctatcgtctccgggccatggtgatt 490  Q
    |||||| |||| |||  ||||| ||||| | |||||||||||    
T  301 ctactctagtgcaagcgctatcatctccagaccatggtgatt 342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University