View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0447-Insertion-6 (Length: 493)
Name: NF0447-Insertion-6
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 7 - 359
Target Start/End: Original strand, 9160257 - 9160609
Alignment:
| Q |
7 |
aaaacttcaatattttcgtaagctgaggtatgtcttcttctacatgtatatatcaatagcacaaagaaaactacaaggccaagcataaatctcattataa |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9160257 |
aaaacttcaatattttcgtaagctgaggtatgtcttcttctacatgtatatatcaatagcacaaagaaaactacaaggcctagcataaatctcattataa |
9160356 |
T |
|
| Q |
107 |
atgatggcaagagataccttccacttattcttcctaattcaatggcaattttagaatcagaaactttggataaatcaaaggctccacctaataattccga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
9160357 |
atgatggcaagagataccttccacttattcttcctaattcaatggcaattttagaatcagaaactttggataaatcaaaggctccacctaataatactga |
9160456 |
T |
|
| Q |
207 |
acttcttttcacaccgactatttggagtagtcctgtacaagttataccacgnnnnnnncaataagaacttgtaataacattattctgtgacttaacttga |
306 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9160457 |
acttcttttcacgccgactatttggagtagtcctgtacaagttataccacgaaaaaaacaataagaacttgtaataacattattctgtgacttaacttga |
9160556 |
T |
|
| Q |
307 |
aatttaagataaagaacaatgaaaataaaaacacaacaaacattacatactga |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9160557 |
aatttaagataaagaacaatgaaaataaaaacacaacaaacattacatactga |
9160609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 426 - 492
Target Start/End: Original strand, 9160700 - 9160766
Alignment:
| Q |
426 |
cctgagtacctcctccgttgtaccggtttgccgcagcacgagcaccgcagccgtgtcatcattagct |
492 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9160700 |
cctgagtacctcctctgttgtaccggtttgccgcagcacgagcaccgcagccgtgtcatcattagct |
9160766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 427
Target Start/End: Original strand, 9160643 - 9160674
Alignment:
| Q |
396 |
ctacatatttagttttgtaggtgcccccaccc |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
9160643 |
ctacatatttagttttgtaggtgcccccaccc |
9160674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 7 - 304
Target Start/End: Complemental strand, 9317735 - 9317435
Alignment:
| Q |
7 |
aaaacttcaatattttcgtaagctgaggtatgtcttcttctacatgtatatatcaatagcacaaagaaaactacaaggccaagcataaatctcattataa |
106 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||| | |
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|
| T |
9317735 |
aaaacttcaatattttcgtaaattgaggcatgttttcttcgacatgtatatatcaatagcacaaagaaaactacaaggcccgtcgtaaatctcattacca |
9317636 |
T |
|
| Q |
107 |
atgatggcaagagataccttccacttattcttcctaattcaatggcaattttagaatcagaaact---ttggataaatcaaaggctccacctaataattc |
203 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||| |||||||| |||||| |
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|
| T |
9317635 |
atgatggcaagatataccttccacttattcttcctaatttaatggcaattttggaatcagaaactttgttggataaatcaaattctccacctgctaattc |
9317536 |
T |
|
| Q |
204 |
cgaacttcttttcacaccgactatttggagtagtcctgtacaagttataccacgnnnnnnncaataagaacttgtaataacattattctgtgacttaact |
303 |
Q |
| |
|
|||||| || |||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| | |||||||||| |
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| T |
9317535 |
tgaactttttgtcacgccgactatttggagtagtcctgtacaagttataccacgaaaaaaaaaaaaagaacttgtaataacattattatctgacttaact |
9317436 |
T |
|
| Q |
304 |
t |
304 |
Q |
| |
|
| |
|
|
| T |
9317435 |
t |
9317435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 55 - 174
Target Start/End: Complemental strand, 9348616 - 9348497
Alignment:
| Q |
55 |
tatatcaatagcacaaagaaaactacaaggccaagcataaatctcattataaatgatggcaagagataccttccacttattcttcctaattcaatggcaa |
154 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |||| ||| |
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|
| T |
9348616 |
tatatcaattgcacaaagaaaactacaaggcctaccataaatctcattataaatgatggcaagagataccttgcacttgttcttccgaattgaatgccaa |
9348517 |
T |
|
| Q |
155 |
ttttagaatcagaaactttg |
174 |
Q |
| |
|
|| ||||||||||||||||| |
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|
| T |
9348516 |
ttctagaatcagaaactttg |
9348497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 9254445 - 9254394
Alignment:
| Q |
35 |
tatgtcttcttctacatgtatatatcaatagcacaaagaaaactacaaggcc |
86 |
Q |
| |
|
|||||||||| | ||| |||||||||||||||||||||||||| | |||||| |
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|
| T |
9254445 |
tatgtcttctccgacaagtatatatcaatagcacaaagaaaaccagaaggcc |
9254394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 9320595 - 9320646
Alignment:
| Q |
35 |
tatgtcttcttctacatgtatatatcaatagcacaaagaaaactacaaggcc |
86 |
Q |
| |
|
|||||||||| | ||| |||||||||||||||||||||||||| | |||||| |
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|
| T |
9320595 |
tatgtcttctccgacaagtatatatcaatagcacaaagaaaaccagaaggcc |
9320646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 15926641 - 15926486
Alignment:
| Q |
7 |
aaaacttcaatattttcgtaagctgaggtatgtcttcttctacatgtatatatcaatagcacaaagaaaacta-caaggccaagcataaatctcattata |
105 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| |||| |||||||||||||||||| ||||||||||| | || |||| | |||||||| |||| |
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|
| T |
15926641 |
aaaacttcaatattttcgtaaattgagttatgtctgcttcgacatgtatatatcaatagaacaaagaaaacaatgaatcccaatga-aaatctcactata |
15926543 |
T |
|
| Q |
106 |
aatgatggcaagagataccttccacttattcttcctaattcaatggcaattttagaa |
162 |
Q |
| |
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| ||||||||||| ||| ||||| | | |||||||| |||||| ||||||||||| |
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|
| T |
15926542 |
agtgatggcaagatatatcttcctgtgactcttcctatctcaatgccaattttagaa |
15926486 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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