View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447-Insertion-8 (Length: 291)
Name: NF0447-Insertion-8
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447-Insertion-8 |
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| [»] chr6 (6 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 7806646 - 7806363
Alignment:
| Q |
8 |
agatttaacgtgacaaattggctccaagaggcnnnnnnncctcatatagaggaaattcatctcactttgcctttccacaccttaaagcatgttattttcg |
107 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7806646 |
agatttaacgtgacaaattggctccaagaggcaaaaaaacctcatatagaggaaattcatctcactttgcctttccacaccttaaagcatgttattttcg |
7806547 |
T |
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| Q |
108 |
tctcgcaaacccttgttgttctcaaacttcaaagtttatatgttggaaaggatacttcaagtgttcatcttccatcactcaaaaccctaaatctgacatc |
207 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7806546 |
tctcgcaaactcttgttgttctcaaacttcaaagtttatatgttggaaaggatacttcaagtgttcatcttccatcactcaaaaccctaaatctgacatc |
7806447 |
T |
|
| Q |
208 |
agtttcttttgaaaatcgggatgattacataaattttctcaatgcttgtcctatcctagaagatttgcatgctgaacttatcta |
291 |
Q |
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| T |
7806446 |
agtttcttttgaaaatcgggatgattacataaattttctcaatgcttgtcctatcctagaagatttgcatgctgaacttatcta |
7806363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 138 - 283
Target Start/End: Original strand, 10415842 - 10415987
Alignment:
| Q |
138 |
aaagtttatatgttggaaaggatacttcaagtgttcatcttccatcactcaaaaccctaaatctgacatcagtttcttttgaaaatcgggatgattacat |
237 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| |||||||||| |
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| T |
10415842 |
aaagtgtatatgttggaaaggatacttcatgtgttcatcttctgtcactcaaaaccctaagcttgatatcagtttcttttgaaaatcggaatgattacat |
10415941 |
T |
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| Q |
238 |
aaattttctcaatgcttgtcctatcctagaagatttgcatgctgaa |
283 |
Q |
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| T |
10415942 |
aaattttcttcatgcttgtcctatcctagaagatttgcatgctgaa |
10415987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 280
Target Start/End: Complemental strand, 3255621 - 3255441
Alignment:
| Q |
100 |
tattttcgtctcgcaaacccttgttgttctcaaacttcaaagtttatatgttggaaaggatacttcaagtgttcatcttccatcactcaaaaccctaaat |
199 |
Q |
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||||||| ||| |||||||||||||||||||||||| |||| ||| |||||||| ||| ||||| ||||| ||||||||||||| |||||||||| | |
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| T |
3255621 |
tattttcatcttccaaacccttgttgttctcaaacttgaaaggttaaatgttggagcggacacttcttgtgttgatcttccatcactaaaaaccctaact |
3255522 |
T |
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| Q |
200 |
ctgacatcagtttcttttgaaaatcgggatgattacataaattttctcaatgcttgtcctatcctagaagatttgcatgct |
280 |
Q |
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|| || |||| |||||||||| || ||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3255521 |
ttggaatatgtttattttgaaaattggaatgattatataaattttctctatgcttgtcctatcctagaagatttgcatgct |
3255441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 281
Target Start/End: Original strand, 7814380 - 7814553
Alignment:
| Q |
108 |
tctcgcaaacccttgttgttctcaaacttcaaagtttatatgttggaaaggatacttcaagtgttcatcttccatcactcaaaaccctaaatctgacatc |
207 |
Q |
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|||| |||||||||||||||||||||||| |||| | ||||||| |||||||| ||||| ||||||| || ||||||| ||| || | | | |
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| T |
7814380 |
tctctcaaacccttgttgttctcaaacttatggatttacacattggaaatgatacttcttgtgttgatcttccctcgctcaaaatcctgcatttaagtta |
7814479 |
T |
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| Q |
208 |
agtttcttttgaaaatcgggatgattacataaattttctcaatgcttgtcctatcctagaagatttgcatgctg |
281 |
Q |
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| T |
7814480 |
tgtttattttgaaaatcagaatgattacataggttttctttctgcttgtcccaacctagaagatttgcatgctg |
7814553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 7871599 - 7871692
Alignment:
| Q |
98 |
gttattttcgtctcgcaaacccttgttgttctcaaacttcaaagtttatatgttggaaaggatacttcaagtgttcatcttccatcactcaaaa |
191 |
Q |
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||||||||| |||| |||||||||||||||||||||||| | || || || || || ||||||||| ||||||||||||||| ||||||| |
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| T |
7871599 |
gttattttcatctctcaaacccttgttgttctcaaacttaagaggatagatttttcaattgatacttcatgtgttcatcttccattgctcaaaa |
7871692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 280
Target Start/End: Original strand, 7860354 - 7860476
Alignment:
| Q |
158 |
gatacttcaagtgttcatcttccatcactcaaaaccctaaatctgacatcagtttcttttgaaaatcgggatgattacataaattttctcaatgcttgtc |
257 |
Q |
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|||||||| ||||| |||||||||| |||||||| | || ||| ||| ||| |||| ||||||| |||||||||| |||||||| |||||||| |
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| T |
7860354 |
gatacttcgtgtgttgatcttccatcgctcaaaacattgcatttgaaatccgttcattttacaaatcggaatgattacatcaattttctttctgcttgtc |
7860453 |
T |
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| Q |
258 |
ctatcctagaagatttgcatgct |
280 |
Q |
| |
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|||| || |||||||| |||||| |
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| T |
7860454 |
ctattctggaagatttacatgct |
7860476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 49 - 284
Target Start/End: Complemental strand, 19317461 - 19317226
Alignment:
| Q |
49 |
tcatatagaggaaattcatctcactttgcctttccacaccttaaagcatgttattttcgtctcgcaaacccttgttgttctcaaacttcaaagtttatat |
148 |
Q |
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| T |
19317461 |
tcatatagaagaaattcatctcagtttgccttcccataccttgatgcccgatctttttgtctctcaaacccttgttgttctaaaacttgaaagtttatat |
19317362 |
T |
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| Q |
149 |
gttggaaaggatacttcaagtgttcatcttccatcactcaaaaccctaaatctgacatcagtttcttttgaaaatcgggatgattacataaattttctca |
248 |
Q |
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|||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| || || ||||| |||||||||| |
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| T |
19317361 |
gttggaaagggtacttcgtgtgttcatcttccatcacttaaaaccctaaatctgacatcagtttattttcaaaattggaataattacgtaaattttcttt |
19317262 |
T |
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| Q |
249 |
atgcttgtcctatcctagaagatttgcatgctgaac |
284 |
Q |
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|||||||||||||| ||||||||||| |||| |||| |
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| T |
19317261 |
atgcttgtcctatcttagaagatttgtatgcagaac |
19317226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 83 - 273
Target Start/End: Original strand, 14017997 - 14018187
Alignment:
| Q |
83 |
cacaccttaaagcatgttattttcgtctcgcaaacccttgttgttctcaaacttcaaagtttatatgttggaaaggatacttcaagtgttcatcttccat |
182 |
Q |
| |
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|||||||| |||| ||| ||||| | || |||||| |||||||||||||||||||| | ||| || ||| |||||||||||| ||||| ||||||| | |
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| T |
14017997 |
cacaccttgaagcccgttgttttcatatcccaaacctttgttgttctcaaacttcaacggttagatattgaaaaggatacttcgtgtgttgatcttccgt |
14018096 |
T |
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| Q |
183 |
cactcaaaaccctaaatctgacatcagtttcttttgaaaatcgggatgattacataaattttctcaatgcttgtcctatcctagaagattt |
273 |
Q |
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| T |
14018097 |
cactcaaaaccctgaatttggaatatgtttcttttgaaaattggaatgattatataaattttctttatggttgtcctatcctagaagattt |
14018187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 280
Target Start/End: Complemental strand, 37997345 - 37997164
Alignment:
| Q |
99 |
ttattttcgtctcgcaaacccttgttgttctcaaacttcaaagtttatatgttggaaaggatacttcaagtgttcatcttccatcactcaaaaccctaaa |
198 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||||| |||| ||| |||||||||| ||||||| ||||| |||||||||| || |||||||| | |
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| T |
37997345 |
ttattttcatctcccaaacccttgttgttctcaaacttaaaaggttaaatgttggaaatgatactttgtgtgttgatcttccatcgctgaaaacccttta |
37997246 |
T |
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| Q |
199 |
tctgacatcagtttcttttgaaaatcgggatgattacataaattttctcaatgcttgtcctatcctagaagatttgcatgct |
280 |
Q |
| |
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| || || ||| | |||| |||||| | | |||||||| |||||||| |||||||||||||| |||||||| |||||| |
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| T |
37997245 |
tttgcaattagtgtattttaaaaatcagaaggattacattaattttctttccgcttgtcctatccttgaagattttcatgct |
37997164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 238
Target Start/End: Complemental strand, 166598 - 166485
Alignment:
| Q |
123 |
ttgttctcaaacttcaaagtttatatgttggaaaggatacttcaagtgttcatcttccatcactcaaaaccctaaatctgacatcagtttcttttgaaaa |
222 |
Q |
| |
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|||||||||||||| ||| |||||||||||| || ||||||| ||||| |||||||||||||| |||| || || | |||||||||| |||| ||| |
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| T |
166598 |
ttgttctcaaacttgaaaatttatatgttggtaatgatactttgtgtgttaatcttccatcactc--aaccttacatttaacatcagtttatttttaaag |
166501 |
T |
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| Q |
223 |
tcgggatgattacata |
238 |
Q |
| |
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|| | ||||||||||| |
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| T |
166500 |
tcagaatgattacata |
166485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 277
Target Start/End: Original strand, 24112215 - 24112323
Alignment:
| Q |
169 |
tgttcatcttccatcactcaaaaccctaaatctgacatcagtttcttttgaaaatcgggatgattacataaattttctcaatgcttgtcctatcctagaa |
268 |
Q |
| |
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|||| |||||||||| ||||||| |||| | ||| || |||| || |||||||| | |||||| ||| || |||| |||||||||||||| ||| || |
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| T |
24112215 |
tgttgatcttccatctctcaaaatcctaggtttgaaatatgtttgttgtgaaaatcagaatgatttcattaagcttcttaatgcttgtcctattctacaa |
24112314 |
T |
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| Q |
269 |
gatttgcat |
277 |
Q |
| |
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||||||||| |
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| T |
24112315 |
gatttgcat |
24112323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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