View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447_high_10 (Length: 325)
Name: NF0447_high_10
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 51035637 - 51035938
Alignment:
| Q |
1 |
atcataatacactaaaactggtatgattactgggttatatgaccagaacagtgattccattatatataaatctgaatgaagtggtaggagcaataactaa |
100 |
Q |
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| T |
51035637 |
atcataatacactaaaactggtatgattactgggttatatgaccagaacagtgattccattatatataaatctgaatgaagtggtaggagcaataactaa |
51035736 |
T |
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| Q |
101 |
agcaaagcaattaacacgtgaaaggaaaaaggaatttctcaaacaatacattataataccttcaaaaacaggctttatactgtcaactcgagcctgccac |
200 |
Q |
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| T |
51035737 |
agcaaagcaattaacacgtgaaaggaaaaaggaatttctcaaacaatacattataataccttcaaaaacaggctttatactgtcaactcgagcctgccac |
51035836 |
T |
|
| Q |
201 |
ttatcattgtctatggcccatcgcaatcacagcatagcgagtatcagcagttgcagcaaaccatgcatgcattcctgaatcaaagaatcatgtaagtgat |
300 |
Q |
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| T |
51035837 |
ttatcattgtctatggcccatcgcaatcacagcatagcgagtatcagcagttgcagcaaaccatgcatgcattcctgaatcaaagaatcatgtaagtgat |
51035936 |
T |
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| Q |
301 |
ga |
302 |
Q |
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|| |
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| T |
51035937 |
ga |
51035938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 46 - 228
Target Start/End: Original strand, 51043496 - 51043677
Alignment:
| Q |
46 |
gaacagtga-ttccattatatataaatctgaatgaagtggtaggagcaataactaaagcaaagcaattaacacgtgaaaggaaaaaggaatttctcaaac |
144 |
Q |
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||||||||| ||||||| ||||||||||| |||||| | ||||||||||||||||||||||||||| ||||||||||| | ||| |||||| |||| |
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| T |
51043496 |
gaacagtgacttccattttatataaatctaaatgaaatagtaggagcaataactaaagcaaagcaaaaaacacgtgaaat--acaagaaatttcagaaac |
51043593 |
T |
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| Q |
145 |
aatacattataataccttcaaaaacaggctttatactgtcaactcgagcctgccacttatcattgtctatggcccatcgcaatc |
228 |
Q |
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| T |
51043594 |
aatacatcatcgtaccttcaaaaactggcttaatactgtcaactcgagcctgccacttatcgttgtctatggcccatcgaaatc |
51043677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 51043787 - 51043865
Alignment:
| Q |
223 |
gcaatcacagcatagcgagtatcagcagttgcagcaaaccatgcatgcattcctgaatcaaagaatcatgtaagtgatg |
301 |
Q |
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|||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
51043787 |
gcaaccacagcatagcgagtatcaacagctgcagcaaaccatgcatgcattcctgaatcaaggaataatgtaagtgatg |
51043865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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