View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0447_high_11 (Length: 316)
Name: NF0447_high_11
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 100 - 306
Target Start/End: Complemental strand, 21764129 - 21763923
Alignment:
| Q |
100 |
tacttacaagaatggtgacaaagtgaccagaagcaacagcaatgagattatcatgagaccaagcaagtgcgtttggaaaagaaggtgaacccattaacat |
199 |
Q |
| |
|
||||||| |||||||| || || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21764129 |
tacttacgagaatggtaacgaaatgaccagaagcagcagcaatgagattatcatgagaccaagcaagtgcgtttggaaaagaaggtgaacccattaacat |
21764030 |
T |
|
| Q |
200 |
agctggctgtaacggactcggttgactacccatcttctgtagcgtagtggtaactgttcaaagaaagatgagatgatggaagtagaagatgagggttcgt |
299 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21764029 |
agctggctgtaacggactcggttgactgcccatcttctgtagcgtagcggtaactgttcaaagaaagatgagatgatggaagtagaagatgagggttcga |
21763930 |
T |
|
| Q |
300 |
atctgtg |
306 |
Q |
| |
|
||||||| |
|
|
| T |
21763929 |
atctgtg |
21763923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 32928336 - 32928446
Alignment:
| Q |
105 |
acaagaatggtgacaaagtgaccagaagcaacagcaatgagattatcatgagaccaagcaagtgcgtttggaaaagaaggtgaacccattaacatagctg |
204 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||||||||| || |||| |||||||| || ||||| |||||| | ||||||||||||| ||| |||| |
|
|
| T |
32928336 |
acaagaatggtgacgaaatgagcagaagcaacagcaatgaggttgtcatcagaccaagaaatggcgttaggaaaacagggtgaacccattagcattgctg |
32928435 |
T |
|
| Q |
205 |
gctgtaacgga |
215 |
Q |
| |
|
|||||||||| |
|
|
| T |
32928436 |
actgtaacgga |
32928446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 215
Target Start/End: Complemental strand, 1483377 - 1483284
Alignment:
| Q |
122 |
gtgaccagaagcaacagcaatgagattatcatgagaccaagcaagtgcgtttggaaaagaaggtgaacccattaacatagctggctgtaacgga |
215 |
Q |
| |
|
|||||||||||||||||||||||| || || ||||||||| ||| | |||||||||| ||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
1483377 |
gtgaccagaagcaacagcaatgaggttgtcttgagaccaaacaatggagtttggaaaacaaggtgaacccattagcatcgctgactgtaacgga |
1483284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University