View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447_high_12 (Length: 312)
Name: NF0447_high_12
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 96 - 302
Target Start/End: Complemental strand, 21764129 - 21763923
Alignment:
| Q |
96 |
tacttacaagaatggtgacaaagtgaccagaagcaacagcaatgagattatcatgagaccaagcaagtgcgtttggaaaagaaggtgaacccattaacat |
195 |
Q |
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| T |
21764129 |
tacttacgagaatggtaacgaaatgaccagaagcagcagcaatgagattatcatgagaccaagcaagtgcgtttggaaaagaaggtgaacccattaacat |
21764030 |
T |
|
| Q |
196 |
agctggctgtaacggactcggttgactacccatcttctgtagcgtagtggtaactgttcaaagaaagatgagatgatggaagtagaagatgagggttcgt |
295 |
Q |
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| T |
21764029 |
agctggctgtaacggactcggttgactgcccatcttctgtagcgtagcggtaactgttcaaagaaagatgagatgatggaagtagaagatgagggttcga |
21763930 |
T |
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| Q |
296 |
atctgtg |
302 |
Q |
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||||||| |
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| T |
21763929 |
atctgtg |
21763923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 32928336 - 32928446
Alignment:
| Q |
101 |
acaagaatggtgacaaagtgaccagaagcaacagcaatgagattatcatgagaccaagcaagtgcgtttggaaaagaaggtgaacccattaacatagctg |
200 |
Q |
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| T |
32928336 |
acaagaatggtgacgaaatgagcagaagcaacagcaatgaggttgtcatcagaccaagaaatggcgttaggaaaacagggtgaacccattagcattgctg |
32928435 |
T |
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| Q |
201 |
gctgtaacgga |
211 |
Q |
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| T |
32928436 |
actgtaacgga |
32928446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 1483377 - 1483284
Alignment:
| Q |
118 |
gtgaccagaagcaacagcaatgagattatcatgagaccaagcaagtgcgtttggaaaagaaggtgaacccattaacatagctggctgtaacgga |
211 |
Q |
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| T |
1483377 |
gtgaccagaagcaacagcaatgaggttgtcttgagaccaaacaatggagtttggaaaacaaggtgaacccattagcatcgctgactgtaacgga |
1483284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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