View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0447_high_13 (Length: 291)

Name: NF0447_high_13
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0447_high_13
NF0447_high_13
[»] chr5 (14 HSPs)
chr5 (75-122)||(24468317-24468364)
chr5 (75-115)||(13332332-13332372)
chr5 (85-115)||(1981890-1981920)
chr5 (74-116)||(2863549-2863591)
chr5 (88-118)||(14923080-14923110)
chr5 (83-117)||(34379451-34379485)
chr5 (88-117)||(1274356-1274385)
chr5 (88-117)||(7076423-7076452)
chr5 (88-117)||(13089826-13089855)
chr5 (75-116)||(17097833-17097874)
chr5 (88-117)||(18660757-18660786)
chr5 (75-116)||(27546325-27546366)
chr5 (88-116)||(18258837-18258865)
chr5 (88-116)||(33037519-33037547)
[»] chr7 (11 HSPs)
chr7 (72-118)||(41750112-41750158)
chr7 (88-118)||(25192928-25192958)
chr7 (75-116)||(9792765-9792806)
chr7 (88-117)||(12007230-12007259)
chr7 (88-117)||(22918485-22918514)
chr7 (88-117)||(37352108-37352137)
chr7 (88-117)||(44895616-44895645)
chr7 (86-115)||(47391356-47391385)
chr7 (88-117)||(47448824-47448853)
chr7 (88-116)||(13152592-13152620)
chr7 (88-116)||(46880901-46880929)
[»] chr4 (19 HSPs)
chr4 (85-118)||(7146161-7146194)
chr4 (88-118)||(22813754-22813784)
chr4 (88-118)||(38134350-38134380)
chr4 (88-118)||(43174981-43175011)
chr4 (75-117)||(51734664-51734706)
chr4 (88-117)||(23369376-23369405)
chr4 (88-117)||(37297047-37297076)
chr4 (88-117)||(44539734-44539763)
chr4 (89-118)||(49449198-49449227)
chr4 (88-117)||(51255744-51255773)
chr4 (85-118)||(54909320-54909353)
chr4 (88-116)||(2004233-2004261)
chr4 (90-118)||(15847268-15847296)
chr4 (88-116)||(19473988-19474016)
chr4 (89-117)||(20118779-20118807)
chr4 (88-116)||(29531649-29531677)
chr4 (88-116)||(36177905-36177933)
chr4 (88-116)||(45082980-45083008)
chr4 (88-116)||(50506392-50506420)
[»] chr2 (13 HSPs)
chr2 (85-118)||(7438565-7438598)
chr2 (75-117)||(24766150-24766192)
chr2 (88-118)||(27490774-27490804)
chr2 (86-116)||(41042253-41042283)
chr2 (88-117)||(27695990-27696019)
chr2 (89-118)||(40504221-40504250)
chr2 (88-117)||(43487377-43487406)
chr2 (88-116)||(6511250-6511278)
chr2 (88-116)||(18254253-18254281)
chr2 (86-118)||(36193766-36193798)
chr2 (89-117)||(38821364-38821392)
chr2 (83-115)||(40210107-40210139)
chr2 (74-114)||(43762135-43762175)
[»] chr8 (13 HSPs)
chr8 (75-115)||(23754738-23754778)
chr8 (89-120)||(33605123-33605154)
chr8 (88-118)||(5772016-5772046)
chr8 (88-118)||(28772168-28772198)
chr8 (88-118)||(34810685-34810715)
chr8 (85-115)||(42733606-42733636)
chr8 (89-118)||(5771921-5771950)
chr8 (75-116)||(5849597-5849638)
chr8 (85-118)||(12172158-12172191)
chr8 (85-118)||(12416586-12416619)
chr8 (72-117)||(12655920-12655965)
chr8 (88-117)||(24479234-24479263)
chr8 (89-117)||(33100514-33100542)
[»] chr6 (5 HSPs)
chr6 (75-119)||(23632668-23632712)
chr6 (88-118)||(17551423-17551453)
chr6 (88-117)||(1156719-1156748)
chr6 (88-117)||(22079607-22079636)
chr6 (89-125)||(3339544-3339580)
[»] chr3 (14 HSPs)
chr3 (83-119)||(27168721-27168757)
chr3 (86-116)||(37453198-37453228)
chr3 (88-117)||(5114076-5114105)
chr3 (89-118)||(35755981-35756010)
chr3 (87-116)||(36639100-36639129)
chr3 (88-116)||(9862532-9862560)
chr3 (88-116)||(27541546-27541574)
chr3 (88-116)||(28700471-28700499)
chr3 (88-116)||(32362932-32362960)
chr3 (88-116)||(36671058-36671086)
chr3 (88-116)||(38926627-38926655)
chr3 (76-116)||(41448208-41448248)
chr3 (88-116)||(46623906-46623934)
chr3 (88-116)||(52939652-52939680)
[»] chr1 (12 HSPs)
chr1 (88-124)||(8350240-8350276)
chr1 (88-119)||(2571631-2571662)
chr1 (75-118)||(4213069-4213112)
chr1 (75-117)||(702518-702560)
chr1 (88-118)||(48983712-48983742)
chr1 (88-117)||(15083094-15083123)
chr1 (75-116)||(16583092-16583133)
chr1 (88-117)||(33100806-33100835)
chr1 (88-116)||(9567005-9567033)
chr1 (85-117)||(42824452-42824484)
chr1 (88-116)||(45121537-45121565)
chr1 (75-115)||(47642638-47642678)
[»] scaffold0020 (1 HSPs)
scaffold0020 (86-117)||(165471-165502)
[»] scaffold0257 (1 HSPs)
scaffold0257 (89-118)||(23978-24007)
[»] scaffold0098 (1 HSPs)
scaffold0098 (88-117)||(49293-49322)


Alignment Details
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 24468317 - 24468364
Alignment:
Q  75 acaaaagctatttaaaaatggttgttcaaatatcatttctctttggtt 122  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  24468317 acaaaagttgtttaaaaatggttgttcaaatatcatttctctttggtt 24468364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 13332372 - 13332332
Alignment:
Q  75 acaaaagctatttaaaaatggttgttcaaatatcatttctc 115  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  13332372 acaaaagttatttaaaaatggttgttcaaatatcatttctc 13332332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 1981920 - 1981890
Alignment:
Q  85 tttaaaaatggttgttcaaatatcatttctc 115  Q
    |||||||||||||||||||||||||||||||    
T  1981920 tttaaaaatggttgttcaaatatcatttctc 1981890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 2863591 - 2863549
Alignment:
Q  74 tacaaaagctatttaaaaatggttgttcaaatatcatttctct 116  Q
    |||||||| ||| ||||||||||||||||||||||| ||||||    
T  2863591 tacaaaagttatataaaaatggttgttcaaatatcaattctct 2863549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 118
Target Start/End: Complemental strand, 14923110 - 14923080
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctcttt 118  Q
    |||||||||||||||||||||||||||||||    
T  14923110 aaaaatggttgttcaaatatcatttctcttt 14923080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 34379485 - 34379451
Alignment:
Q  83 tatttaaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||| |||||||    
T  34379485 tatttaaaaatggttgttcaaatatcacttctctt 34379451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 1274385 - 1274356
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  1274385 aaaaatggttgttcaaatatcatttctctt 1274356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 7076452 - 7076423
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  7076452 aaaaatggttgttcaaatatcatttctctt 7076423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Original strand, 13089826 - 13089855
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  13089826 aaaaatggttgttcaaatatcatttctctt 13089855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 17097833 - 17097874
Alignment:
Q  75 acaaaagctatttaaaaatggttgttcaaatatcatttctct 116  Q
    ||||||| |||  |||||||||||||||||||||||||||||    
T  17097833 acaaaagttatcaaaaaatggttgttcaaatatcatttctct 17097874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 18660786 - 18660757
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  18660786 aaaaatggttgttcaaatatcatttctctt 18660757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 27546366 - 27546325
Alignment:
Q  75 acaaaagctatttaaaaatggttgttcaaatatcatttctct 116  Q
    ||||||| | |||||||||||||||||||| |||||||||||    
T  27546366 acaaaagttgtttaaaaatggttgttcaaacatcatttctct 27546325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 18258837 - 18258865
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  18258837 aaaaatggttgttcaaatatcatttctct 18258865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 33037547 - 33037519
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  33037547 aaaaatggttgttcaaatatcatttctct 33037519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 41750158 - 41750112
Alignment:
Q  72 attacaaaagctatttaaaaatggttgttcaaatatcatttctcttt 118  Q
    |||||||||| | |||||||||||||||| |||||||||||||||||    
T  41750158 attacaaaagttgtttaaaaatggttgtttaaatatcatttctcttt 41750112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 25192928 - 25192958
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctcttt 118  Q
    |||||||||||||||||||||||||||||||    
T  25192928 aaaaatggttgttcaaatatcatttctcttt 25192958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 9792806 - 9792765
Alignment:
Q  75 acaaaagctatttaaaaatggttgttcaaatatcatttctct 116  Q
    ||||||| | ||||||| ||||||||||||||||||||||||    
T  9792806 acaaaagttgtttaaaagtggttgttcaaatatcatttctct 9792765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Original strand, 12007230 - 12007259
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  12007230 aaaaatggttgttcaaatatcatttctctt 12007259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Original strand, 22918485 - 22918514
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  22918485 aaaaatggttgttcaaatatcatttctctt 22918514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 37352137 - 37352108
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  37352137 aaaaatggttgttcaaatatcatttctctt 37352108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Original strand, 44895616 - 44895645
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  44895616 aaaaatggttgttcaaatatcatttctctt 44895645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 115
Target Start/End: Original strand, 47391356 - 47391385
Alignment:
Q  86 ttaaaaatggttgttcaaatatcatttctc 115  Q
    ||||||||||||||||||||||||||||||    
T  47391356 ttaaaaatggttgttcaaatatcatttctc 47391385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 47448853 - 47448824
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  47448853 aaaaatggttgttcaaatatcatttctctt 47448824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 13152620 - 13152592
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  13152620 aaaaatggttgttcaaatatcatttctct 13152592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 46880929 - 46880901
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  46880929 aaaaatggttgttcaaatatcatttctct 46880901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 7146161 - 7146194
Alignment:
Q  85 tttaaaaatggttgttcaaatatcatttctcttt 118  Q
    ||||||||||||||||||||||||||||||||||    
T  7146161 tttaaaaatggttgttcaaatatcatttctcttt 7146194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 22813754 - 22813784
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctcttt 118  Q
    |||||||||||||||||||||||||||||||    
T  22813754 aaaaatggttgttcaaatatcatttctcttt 22813784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 118
Target Start/End: Complemental strand, 38134380 - 38134350
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctcttt 118  Q
    |||||||||||||||||||||||||||||||    
T  38134380 aaaaatggttgttcaaatatcatttctcttt 38134350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 118
Target Start/End: Complemental strand, 43175011 - 43174981
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctcttt 118  Q
    |||||||||||||||||||||||||||||||    
T  43175011 aaaaatggttgttcaaatatcatttctcttt 43174981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 51734664 - 51734706
Alignment:
Q  75 acaaaagctatttaaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||| | ||||||| |||||||||||||||||||||||||    
T  51734664 acaaaagttgtttaaaagtggttgttcaaatatcatttctctt 51734706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Original strand, 23369376 - 23369405
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  23369376 aaaaatggttgttcaaatatcatttctctt 23369405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 37297076 - 37297047
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  37297076 aaaaatggttgttcaaatatcatttctctt 37297047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 44539763 - 44539734
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  44539763 aaaaatggttgttcaaatatcatttctctt 44539734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 49449198 - 49449227
Alignment:
Q  89 aaaatggttgttcaaatatcatttctcttt 118  Q
    ||||||||||||||||||||||||||||||    
T  49449198 aaaatggttgttcaaatatcatttctcttt 49449227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 51255773 - 51255744
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  51255773 aaaaatggttgttcaaatatcatttctctt 51255744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 54909353 - 54909320
Alignment:
Q  85 tttaaaaatggttgttcaaatatcatttctcttt 118  Q
    ||||| ||||||||||||||||||||||||||||    
T  54909353 tttaataatggttgttcaaatatcatttctcttt 54909320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 2004233 - 2004261
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  2004233 aaaaatggttgttcaaatatcatttctct 2004261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 118
Target Start/End: Complemental strand, 15847296 - 15847268
Alignment:
Q  90 aaatggttgttcaaatatcatttctcttt 118  Q
    |||||||||||||||||||||||||||||    
T  15847296 aaatggttgttcaaatatcatttctcttt 15847268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 19473988 - 19474016
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  19473988 aaaaatggttgttcaaatatcatttctct 19474016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 20118807 - 20118779
Alignment:
Q  89 aaaatggttgttcaaatatcatttctctt 117  Q
    |||||||||||||||||||||||||||||    
T  20118807 aaaatggttgttcaaatatcatttctctt 20118779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 29531649 - 29531677
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  29531649 aaaaatggttgttcaaatatcatttctct 29531677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 36177933 - 36177905
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  36177933 aaaaatggttgttcaaatatcatttctct 36177905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 45083008 - 45082980
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  45083008 aaaaatggttgttcaaatatcatttctct 45082980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 50506420 - 50506392
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  50506420 aaaaatggttgttcaaatatcatttctct 50506392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 7438598 - 7438565
Alignment:
Q  85 tttaaaaatggttgttcaaatatcatttctcttt 118  Q
    ||||||||||||||||||||||||||||||||||    
T  7438598 tttaaaaatggttgttcaaatatcatttctcttt 7438565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 24766192 - 24766150
Alignment:
Q  75 acaaaagctatttaaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||| |||| |||||||||||| |||||||||||||||||    
T  24766192 acaaaagttattaaaaaatggttgtacaaatatcatttctctt 24766150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 27490774 - 27490804
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctcttt 118  Q
    |||||||||||||||||||||||||||||||    
T  27490774 aaaaatggttgttcaaatatcatttctcttt 27490804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 116
Target Start/End: Complemental strand, 41042283 - 41042253
Alignment:
Q  86 ttaaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||||    
T  41042283 ttaaaaatggttgttcaaatatcatttctct 41042253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Original strand, 27695990 - 27696019
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  27695990 aaaaatggttgttcaaatatcatttctctt 27696019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 118
Target Start/End: Complemental strand, 40504250 - 40504221
Alignment:
Q  89 aaaatggttgttcaaatatcatttctcttt 118  Q
    ||||||||||||||||||||||||||||||    
T  40504250 aaaatggttgttcaaatatcatttctcttt 40504221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 43487406 - 43487377
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  43487406 aaaaatggttgttcaaatatcatttctctt 43487377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 6511278 - 6511250
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  6511278 aaaaatggttgttcaaatatcatttctct 6511250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 18254253 - 18254281
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  18254253 aaaaatggttgttcaaatatcatttctct 18254281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 36193766 - 36193798
Alignment:
Q  86 ttaaaaatggttgttcaaatatcatttctcttt 118  Q
    ||||||||||||||||||||||||||| |||||    
T  36193766 ttaaaaatggttgttcaaatatcatttttcttt 36193798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 38821392 - 38821364
Alignment:
Q  89 aaaatggttgttcaaatatcatttctctt 117  Q
    |||||||||||||||||||||||||||||    
T  38821392 aaaatggttgttcaaatatcatttctctt 38821364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 40210107 - 40210139
Alignment:
Q  83 tatttaaaaatggttgttcaaatatcatttctc 115  Q
    ||||||||||| |||||||||||||||||||||    
T  40210107 tatttaaaaatagttgttcaaatatcatttctc 40210139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 43762135 - 43762175
Alignment:
Q  74 tacaaaagctatttaaaaatggttgttcaaatatcatttct 114  Q
    |||||||| ||| | ||||||||||||||||||||||||||    
T  43762135 tacaaaagttatctcaaaatggttgttcaaatatcatttct 43762175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 23754738 - 23754778
Alignment:
Q  75 acaaaagctatttaaaaatggttgttcaaatatcatttctc 115  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  23754738 acaaaagttattaaaaaatggttgttcaaatatcatttctc 23754778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 120
Target Start/End: Original strand, 33605123 - 33605154
Alignment:
Q  89 aaaatggttgttcaaatatcatttctctttgg 120  Q
    ||||||||||||||||||||||||||||||||    
T  33605123 aaaatggttgttcaaatatcatttctctttgg 33605154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 5772016 - 5772046
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctcttt 118  Q
    |||||||||||||||||||||||||||||||    
T  5772016 aaaaatggttgttcaaatatcatttctcttt 5772046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 28772168 - 28772198
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctcttt 118  Q
    |||||||||||||||||||||||||||||||    
T  28772168 aaaaatggttgttcaaatatcatttctcttt 28772198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 34810685 - 34810715
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctcttt 118  Q
    |||||||||||||||||||||||||||||||    
T  34810685 aaaaatggttgttcaaatatcatttctcttt 34810715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 42733606 - 42733636
Alignment:
Q  85 tttaaaaatggttgttcaaatatcatttctc 115  Q
    |||||||||||||||||||||||||||||||    
T  42733606 tttaaaaatggttgttcaaatatcatttctc 42733636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 5771921 - 5771950
Alignment:
Q  89 aaaatggttgttcaaatatcatttctcttt 118  Q
    ||||||||||||||||||||||||||||||    
T  5771921 aaaatggttgttcaaatatcatttctcttt 5771950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 5849597 - 5849638
Alignment:
Q  75 acaaaagctatttaaaaatggttgttcaaatatcatttctct 116  Q
    ||||||| |||  |||||||||||||||||||||||||||||    
T  5849597 acaaaagttatcaaaaaatggttgttcaaatatcatttctct 5849638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 12172158 - 12172191
Alignment:
Q  85 tttaaaaatggttgttcaaatatcatttctcttt 118  Q
    |||||||||||||||||||||||||||| |||||    
T  12172158 tttaaaaatggttgttcaaatatcatttttcttt 12172191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 12416586 - 12416619
Alignment:
Q  85 tttaaaaatggttgttcaaatatcatttctcttt 118  Q
    |||||||||||||||||||||||||||| |||||    
T  12416586 tttaaaaatggttgttcaaatatcatttttcttt 12416619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 12655965 - 12655920
Alignment:
Q  72 attacaaaagctatttaaaaatggttgttcaaatatcatttctctt 117  Q
    |||||||||| ||||  ||||||||||| |||||||||||||||||    
T  12655965 attacaaaagttattataaaatggttgtacaaatatcatttctctt 12655920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 24479263 - 24479234
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  24479263 aaaaatggttgttcaaatatcatttctctt 24479234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 33100514 - 33100542
Alignment:
Q  89 aaaatggttgttcaaatatcatttctctt 117  Q
    |||||||||||||||||||||||||||||    
T  33100514 aaaatggttgttcaaatatcatttctctt 33100542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 23632668 - 23632712
Alignment:
Q  75 acaaaagctatttaaaaatggttgttcaaatatcatttctctttg 119  Q
    ||||||| | ||||||| |||||||||||||||||||||||||||    
T  23632668 acaaaagttgtttaaaagtggttgttcaaatatcatttctctttg 23632712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 17551423 - 17551453
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctcttt 118  Q
    |||||||||||||||||||||||||||||||    
T  17551423 aaaaatggttgttcaaatatcatttctcttt 17551453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 1156748 - 1156719
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  1156748 aaaaatggttgttcaaatatcatttctctt 1156719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Original strand, 22079607 - 22079636
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  22079607 aaaaatggttgttcaaatatcatttctctt 22079636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 3339544 - 3339580
Alignment:
Q  89 aaaatggttgttcaaatatcatttctctttggttata 125  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  3339544 aaaatggttgtacaaatatcatttctctttagttata 3339580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 27168721 - 27168757
Alignment:
Q  83 tatttaaaaatggttgttcaaatatcatttctctttg 119  Q
    |||| ||||||||||||||||||||||||||||||||    
T  27168721 tattaaaaaatggttgttcaaatatcatttctctttg 27168757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 116
Target Start/End: Complemental strand, 37453228 - 37453198
Alignment:
Q  86 ttaaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||||    
T  37453228 ttaaaaatggttgttcaaatatcatttctct 37453198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 5114105 - 5114076
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  5114105 aaaaatggttgttcaaatatcatttctctt 5114076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 118
Target Start/End: Complemental strand, 35756010 - 35755981
Alignment:
Q  89 aaaatggttgttcaaatatcatttctcttt 118  Q
    ||||||||||||||||||||||||||||||    
T  35756010 aaaatggttgttcaaatatcatttctcttt 35755981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 116
Target Start/End: Complemental strand, 36639129 - 36639100
Alignment:
Q  87 taaaaatggttgttcaaatatcatttctct 116  Q
    ||||||||||||||||||||||||||||||    
T  36639129 taaaaatggttgttcaaatatcatttctct 36639100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 9862560 - 9862532
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  9862560 aaaaatggttgttcaaatatcatttctct 9862532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 27541546 - 27541574
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  27541546 aaaaatggttgttcaaatatcatttctct 27541574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 28700499 - 28700471
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  28700499 aaaaatggttgttcaaatatcatttctct 28700471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 32362960 - 32362932
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  32362960 aaaaatggttgttcaaatatcatttctct 32362932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 36671058 - 36671086
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  36671058 aaaaatggttgttcaaatatcatttctct 36671086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 38926655 - 38926627
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  38926655 aaaaatggttgttcaaatatcatttctct 38926627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 41448208 - 41448248
Alignment:
Q  76 caaaagctatttaaaaatggttgttcaaatatcatttctct 116  Q
    |||||| | ||||||||||||||| ||||||||||||||||    
T  41448208 caaaagttgtttaaaaatggttgtacaaatatcatttctct 41448248  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 46623934 - 46623906
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  46623934 aaaaatggttgttcaaatatcatttctct 46623906  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 52939680 - 52939652
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  52939680 aaaaatggttgttcaaatatcatttctct 52939652  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 8350240 - 8350276
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctttggttat 124  Q
    ||||||||||||||||||||||||||||||| |||||    
T  8350240 aaaaatggttgttcaaatatcatttctctttagttat 8350276  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 2571662 - 2571631
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctttg 119  Q
    ||||||||||||||||||||||||||||||||    
T  2571662 aaaaatggttgttcaaatatcatttctctttg 2571631  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 4213112 - 4213069
Alignment:
Q  75 acaaaagctatttaaaaatggttgttcaaatatcatttctcttt 118  Q
    ||||||| |||  |||||||||||||||||||||||||||||||    
T  4213112 acaaaagttatcaaaaaatggttgttcaaatatcatttctcttt 4213069  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 702518 - 702560
Alignment:
Q  75 acaaaagctatttaaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||| ||||||||| |||||||||||||||| ||||||||    
T  702518 acaaaagttatttaaaagtggttgttcaaatatcgtttctctt 702560  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 48983712 - 48983742
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctcttt 118  Q
    |||||||||||||||||||||||||||||||    
T  48983712 aaaaatggttgttcaaatatcatttctcttt 48983742  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Original strand, 15083094 - 15083123
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  15083094 aaaaatggttgttcaaatatcatttctctt 15083123  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 16583092 - 16583133
Alignment:
Q  75 acaaaagctatttaaaaatggttgttcaaatatcatttctct 116  Q
    ||||||| ||||||||| || |||||||||||||||||||||    
T  16583092 acaaaagttatttaaaagtgattgttcaaatatcatttctct 16583133  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 33100835 - 33100806
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  33100835 aaaaatggttgttcaaatatcatttctctt 33100806  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 9567005 - 9567033
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  9567005 aaaaatggttgttcaaatatcatttctct 9567033  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 42824484 - 42824452
Alignment:
Q  85 tttaaaaatggttgttcaaatatcatttctctt 117  Q
    |||||||||||||| ||||||||||||||||||    
T  42824484 tttaaaaatggttgatcaaatatcatttctctt 42824452  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 45121537 - 45121565
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctct 116  Q
    |||||||||||||||||||||||||||||    
T  45121537 aaaaatggttgttcaaatatcatttctct 45121565  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 47642638 - 47642678
Alignment:
Q  75 acaaaagctatttaaaaatggttgttcaaatatcatttctc 115  Q
    ||||||| |||  ||||||||||||||||||||||||||||    
T  47642638 acaaaagttatcaaaaaatggttgttcaaatatcatttctc 47642678  T

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Target: scaffold0020 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 117
Target Start/End: Complemental strand, 165502 - 165471
Alignment:
Q  86 ttaaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||||    
T  165502 ttaaaaatggttgttcaaatatcatttctctt 165471  T

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Target: scaffold0257 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 118
Target Start/End: Complemental strand, 24007 - 23978
Alignment:
Q  89 aaaatggttgttcaaatatcatttctcttt 118  Q
    ||||||||||||||||||||||||||||||    
T  24007 aaaatggttgttcaaatatcatttctcttt 23978  T

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Target: scaffold0098 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 49322 - 49293
Alignment:
Q  88 aaaaatggttgttcaaatatcatttctctt 117  Q
    ||||||||||||||||||||||||||||||    
T  49322 aaaaatggttgttcaaatatcatttctctt 49293  T

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