View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447_high_20 (Length: 266)
Name: NF0447_high_20
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 37 - 236
Target Start/End: Original strand, 5668320 - 5668519
Alignment:
| Q |
37 |
gacatcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaannnnnnnatcaagtgtaacatctttgattaaaacatcaagtccc |
136 |
Q |
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| T |
5668320 |
gacatcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaattattttatcaagtgtaacttctttgattaaaacatcaagtccc |
5668419 |
T |
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| Q |
137 |
acacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtct |
236 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5668420 |
acacttttcaagtcacgagagatgcagatatgttattctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtct |
5668519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 37 - 236
Target Start/End: Original strand, 5677814 - 5678013
Alignment:
| Q |
37 |
gacatcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaannnnnnnatcaagtgtaacatctttgattaaaacatcaagtccc |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
5677814 |
gacatcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaatttttttatcaagtgtaacttctttgattaaaacatcaagtccc |
5677913 |
T |
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| Q |
137 |
acacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtct |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5677914 |
acacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcatttgtgagtttgcatctcaatctctattgtct |
5678013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 39 - 233
Target Start/End: Original strand, 5743432 - 5743623
Alignment:
| Q |
39 |
catcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaannnnnnnatcaagtgtaacatctttgattaaaacatcaagtcccac |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| | |||||||||||||||||||||||||| |
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| T |
5743432 |
catcatcagctaccatatgttctatttggtctttcacaagttatattttttctattatt---tcaagtgtgatttctttgattaaaacatcaagtcccac |
5743528 |
T |
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| Q |
139 |
acttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattg |
233 |
Q |
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|||||||||||| || | |||||||||||| ||||| | ||||||||| |||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
5743529 |
tcttttcaagtcaagaaatatgcagatatgtgtttctggtggtgaaaaacaagaagttgtgtggcgtttgtgagtttgcatctcaatctccattg |
5743623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 39 - 233
Target Start/End: Original strand, 5780391 - 5780582
Alignment:
| Q |
39 |
catcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaannnnnnnatcaagtgtaacatctttgattaaaacatcaagtcccac |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| | |||||||||||||||||||||||||| |
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| T |
5780391 |
catcatcagctaccatatgttctatttggtctttcacaagttatattttttctattatt---tcaagtgtgatttctttgattaaaacatcaagtcccac |
5780487 |
T |
|
| Q |
139 |
acttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattg |
233 |
Q |
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|||||||||||| || | |||||||||||| ||||| | ||||||||| |||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
5780488 |
tcttttcaagtcaagaaatatgcagatatgtgtttctggtggtgaaaaacaagaagttgtgtggcgtttgtgagtttgcatctcaatctccattg |
5780582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 102 - 236
Target Start/End: Original strand, 5692106 - 5692240
Alignment:
| Q |
102 |
caagtgtaacatctttgattaaaacatcaagtcccacacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtg |
201 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||| |||||| |||||| ||||||| || |
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| T |
5692106 |
caagtgtaacttctttgattaaaacatcaagtcccacccttttcaagtcaggagatatgcagatatgtttttctgacgatggaaaacaagaagctgcgtc |
5692205 |
T |
|
| Q |
202 |
gcgtttgtgagtttgcatctcaatctctattgtct |
236 |
Q |
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|| |||||||||||||||||||||||| ||||||| |
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| T |
5692206 |
gcctttgtgagtttgcatctcaatctccattgtct |
5692240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 113 - 236
Target Start/End: Original strand, 5791647 - 5791770
Alignment:
| Q |
113 |
tctttgattaaaacatcaagtcccacacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgag |
212 |
Q |
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| T |
5791647 |
tctttgattaaaacatcaagtcccacactcttcaagtcaagagatatgcagatatgtgtttctgacggtgaaaaacaagaaattgtgtggcgtttgtgag |
5791746 |
T |
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| Q |
213 |
tttgcatctcaatctctattgtct |
236 |
Q |
| |
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|||||||||||||||| ||||||| |
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| T |
5791747 |
tttgcatctcaatctccattgtct |
5791770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 236
Target Start/End: Original strand, 5751114 - 5751311
Alignment:
| Q |
39 |
catcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaannnnnnnatcaagtgtaacatctttgattaaaacatcaagtcccac |
138 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||||||||||||||||| | | | ||||| | ||||||||||||||||||||||||| |
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| T |
5751114 |
catcatcagctactatgtgttctatttggtctgtcacaagttatatcttttctattagtttaacgagtgtgatttctttgattaaaacatcaagtcccaa |
5751213 |
T |
|
| Q |
139 |
acttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtct |
236 |
Q |
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||||| ||||| ||| ||| |||||||| ||| | ||| |||| | || |||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5751214 |
ccttttgaagtcctgaggtatgaagatatgtgtttatgacggtgaacatcaagaagttgtgtggcgtttgtgagtttgcatctcaatctccattgtct |
5751311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 236
Target Start/End: Original strand, 5788073 - 5788270
Alignment:
| Q |
39 |
catcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaannnnnnnatcaagtgtaacatctttgattaaaacatcaagtcccac |
138 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||||||||||||||||| | | | ||||| | ||||||||||||||||||||||||| |
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| T |
5788073 |
catcatcagctactatgtgttctatttggtctgtcacaagttatatcttttctattagtttaacgagtgtgatttctttgattaaaacatcaagtcccaa |
5788172 |
T |
|
| Q |
139 |
acttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtct |
236 |
Q |
| |
|
||||| ||||| ||| ||| |||||||| ||| | ||| |||| | || |||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5788173 |
ccttttgaagtcctgaggtatgaagatatgtgtttatgacggtgaacatcaagaagttgtgtggcgtttgtgagtttgcatctcaatctccattgtct |
5788270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 5692070 - 5692110
Alignment:
| Q |
39 |
catcatcagctaccatatgttctatttggtctttcacaagt |
79 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
5692070 |
catcatcagctaccatatgttctatttggtctttcacaagt |
5692110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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