View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447_high_28 (Length: 243)
Name: NF0447_high_28
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 2547596 - 2547455
Alignment:
| Q |
86 |
atcatatcgatctacctatcgatttcaacatttttgttaactgagttagtacttgtggaaatgaagcccataaccaaatatgtgcataaattatgtagtt |
185 |
Q |
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| T |
2547596 |
atcatagcgatctacctatcgatttcaacatttttgttaactgagttagtacttgtggaaatgaagcccataaccaaatatgtgcataaattatgtagtt |
2547497 |
T |
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| Q |
186 |
ggagaatcacatatttgacgcatttgtcaatcaagtatcgac |
227 |
Q |
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| T |
2547496 |
gaagaataacatatttgacgcatttgtcaatcaagtaacgac |
2547455 |
T |
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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 21987878 - 21987963
Alignment:
| Q |
1 |
aatccgtctcaaactctgtctctagcagagatggaataaaatccgtctctatattccgtcggtatttgaaacttttctagtagtga |
86 |
Q |
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| T |
21987878 |
aatccgtctcaatatccgtctctaacagagatggaaaaaaatccgtctctaaattccgtcggtatttgagacttttctagtagtga |
21987963 |
T |
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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 621220 - 621287
Alignment:
| Q |
18 |
gtctctagcagagatggaataaaatccgtctctatattccgtcggtatttgaaacttttctagtagtg |
85 |
Q |
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| T |
621220 |
gtctctatcagagacggaataaaatctgtctctaaattccgtcggtatatgaaacttttctagtagtg |
621287 |
T |
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Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 2372568 - 2372636
Alignment:
| Q |
18 |
gtctctagcagagatggaataaaatccgtctctatattccgtcggtatttgaaacttttctagtagtga |
86 |
Q |
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| T |
2372568 |
gtctctaggagagacggaataaattccgtctccaaattccgtcggtatttgagacttttctagtagtga |
2372636 |
T |
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Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 35406583 - 35406515
Alignment:
| Q |
18 |
gtctctagcagagatggaataaaatccgtctctatattccgtcggtatttgaaacttttctagtagtga |
86 |
Q |
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| T |
35406583 |
gtctctatcagagacggaataaaatctgtctctaaattccgttggtatatgaaacttttctagtagtga |
35406515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 23952374 - 23952441
Alignment:
| Q |
18 |
gtctctagcagagatggaataaaatccgtctctatattccgtcggtatttgaaacttttctagtagtg |
85 |
Q |
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| T |
23952374 |
gtctctatcagagacggaataaaatctgtctctaaattccgtcggtatataaaacttttctagtagtg |
23952441 |
T |
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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 11198282 - 11198349
Alignment:
| Q |
18 |
gtctctagcagagatggaataaaatccgtctctatattccgtcggtatttgaaacttttctagtagtg |
85 |
Q |
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| T |
11198282 |
gtctctatcagagacggaataaaatctgtctctaaattccgtcggtatatgaaacttttctagtagtg |
11198349 |
T |
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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 34585993 - 34585926
Alignment:
| Q |
18 |
gtctctagcagagatggaataaaatccgtctctatattccgtcggtatttgaaacttttctagtagtg |
85 |
Q |
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| T |
34585993 |
gtctctatcagagacggaataaaatctgtctctaaattccgtcagtatatgaaacttttctagtagtg |
34585926 |
T |
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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 34580229 - 34580177
Alignment:
| Q |
33 |
ggaataaaatccgtctctatattccgtcggtatttgaaacttttctagtagtg |
85 |
Q |
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||||||||||| ||||||| |||||||| |||| ||||||||||||||||||| |
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| T |
34580229 |
ggaataaaatctgtctctaaattccgtcagtatatgaaacttttctagtagtg |
34580177 |
T |
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