View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447_high_31 (Length: 226)
Name: NF0447_high_31
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 17662419 - 17662298
Alignment:
| Q |
5 |
gtttataaattaatagttagggcttttccgaagaaatagctagggtttatcttactttctctttctttcatcaaacttcaactttcttacctttagttta |
104 |
Q |
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| T |
17662419 |
gtttataaagtaatagttaggacttttccgaagaaatagctagggtttatcttactttctctttctttcatcaaacttcaactttgttacctttagttta |
17662320 |
T |
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| Q |
105 |
ttttcatcactcccttattctc |
126 |
Q |
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|||||||||||||||||||||| |
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| T |
17662319 |
ttttcatcactcccttattctc |
17662298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 17701664 - 17701784
Alignment:
| Q |
5 |
gtttataaattaatagttagggcttttccgaagaaatagctagggtttatcttactttctctttctttcatcaaacttcaactttcttacctttagttta |
104 |
Q |
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||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| | ||| || ||||| |
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| T |
17701664 |
gtttataaagcaatagctaggg-ttttccgaagaaatagctagggtttatcttaatttatctttctttcatcaaacttcaactttgtcaccgttggttta |
17701762 |
T |
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| Q |
105 |
ttttcatcactcccttattctc |
126 |
Q |
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|||||||||||||||||||||| |
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| T |
17701763 |
ttttcatcactcccttattctc |
17701784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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