View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447_high_4 (Length: 406)
Name: NF0447_high_4
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 29 - 171
Target Start/End: Complemental strand, 22081032 - 22080890
Alignment:
| Q |
29 |
agagggaaatgagggaaatctgcagaaagattttcaaaaggtttttgaaaaagcatatgtcacttccttgggggaagtgggttgtacttctgcagagaag |
128 |
Q |
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| T |
22081032 |
agagggaaatgagggaaatctgcagaaagattttcaaaaggtttttgaaaaagcatatgtcacttccttgggggaagtgggttgtacttctgcagagaag |
22080933 |
T |
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| Q |
129 |
gtctactccttaaacttattaaccttccaaacacacttcaaga |
171 |
Q |
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| T |
22080932 |
gtctactgcctaaacttattaaccttgcaaacacacttcaaga |
22080890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 240 - 406
Target Start/End: Complemental strand, 22080829 - 22080667
Alignment:
| Q |
240 |
tcatcttgctatttttccattttattttcgattgcacagctaaagcatttattaattcaatctcattttgttccgnnnnnnnncttcccgtttttcagtt |
339 |
Q |
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| T |
22080829 |
tcatctttctatttttccattttattttcgatttcacagctcaagcatttattaattgaatctcattttgttccgttttt----ttcccatttttcaggt |
22080734 |
T |
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| Q |
340 |
tccttcaagcattcctcatcctggtaaatttggtttacattttttcaagtccaaattttaggtcatt |
406 |
Q |
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| T |
22080733 |
tccttcaagcattcttcatcctggtaaatttgttttacatttttccagttccaatttttagatcatt |
22080667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 1521837 - 1521913
Alignment:
| Q |
39 |
gagggaaatctgcagaaagattttcaaaaggtttttgaaaaagcatatgtcacttccttgggggaagtgggttgtac |
115 |
Q |
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| T |
1521837 |
gagggaaatcttcagaaagattttgaaatggctttggaaaaagcatatgtcacttccttgggggaagtgggttgtac |
1521913 |
T |
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