View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447_high_9 (Length: 330)
Name: NF0447_high_9
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 19751400 - 19751167
Alignment:
| Q |
1 |
gtacataaagtgagtaatctaaccatatagtagttagtgccagctgttaattggtaggaagatctaatagctagttagaacaatgacttctaaatataga |
100 |
Q |
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| T |
19751400 |
gtacatagagtgagtaatctaaccatatagtagttagtgccagctgttaattggtaggaagatctaatagctagttagaacaatgacttctatatataga |
19751301 |
T |
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| Q |
101 |
tgaaatgtaacaaactcgacacaattcgataaacagttttcattatctcagatttcttcttcttccctaagttactacattttatttggttttcatcttg |
200 |
Q |
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| T |
19751300 |
tgaaatgtaacaaactcgacacaattcgataaacagttttcattttctcagatttcttcttcttccctaagttactacattttatttggttttcatcttg |
19751201 |
T |
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| Q |
201 |
atgatgatgaacttcatgaattggcgtagaatct |
234 |
Q |
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| T |
19751200 |
atgatgatgaacttcatgaattggcgtagaatct |
19751167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 207
Target Start/End: Complemental strand, 1820390 - 1820236
Alignment:
| Q |
47 |
ttaattggtaggaagatctaatagctagttagaacaatgacttctaaatatagatgaaatgtaacaaactcgacacaattcgataaacagttttcattat |
146 |
Q |
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| T |
1820390 |
ttaattggttggaagatctaa--gttagttagaactataggttctatatatagatcaaccgtaacaaactcaacacaattcgataaaca-ttttaatttt |
1820294 |
T |
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| Q |
147 |
ctcagatttcttcttcttccctaagttactacattttatttggttttcatcttgatgatga |
207 |
Q |
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| T |
1820293 |
ctgagatttcttcttct---ataagcttctgcattttctttggttttcattatgatgatga |
1820236 |
T |
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