View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447_low_1 (Length: 582)
Name: NF0447_low_1
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 37759529 - 37759036
Alignment:
| Q |
1 |
attaggtcacttatcacctatgcctgttttgataaaaaatttatttcaaagagtatgcttcctagctacttcatcttgatcttgttcgttgttgaaaatt |
100 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37759529 |
attaggtcacttatcacctaggcctgttttgataattt-tttatttcaaagagtatgcttcctagctacttcatcttgatcttgttcgttgttgaaagtt |
37759431 |
T |
|
| Q |
101 |
cttcgtacaatttgataggcgtttgacttcatgtgtcaaaaacgtatccataagcattatagtatttctgtctttcataatatcaactggttatgatatt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37759430 |
cttcgtacaatttggtaggcgtttgacttcatgtgtcaaaaacgtacccataagcattatcgtatttctgtctttcataatatcaactggttatgatatt |
37759331 |
T |
|
| Q |
201 |
taagtatatctcatacaaccaaatnnnnnnnnn-tacgtctcataagatagatacatattggttaaagtattgccaaattaaagcaaattagagggcatt |
299 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37759330 |
taagtatatctcatacaaccaaataaaaagaaaatacgtctcataagatagatacatattggttaaagtattgtcaaattaaagcaaattagagggcatt |
37759231 |
T |
|
| Q |
300 |
ttagtatcaattcagaatacacaaatccatggtttattagttgatgaaatggctctaggcaagtcaattagctatctggtttgtctgtctatactaagta |
399 |
Q |
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| T |
37759230 |
ttagtatcaattcagaatacacaaatccatggtttattagttgatgaaatggctctaggcgagtcaattagctacctggtttgtctgtctatactaagta |
37759131 |
T |
|
| Q |
400 |
tgagaaacagtaatcttgcaatctggctcaaaaattaagtgagaatccactcttaaatgagaaattcaagttttaatatatttcaattgatgatg |
494 |
Q |
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| T |
37759130 |
tgagaaacagtaatctcgcaatctggctcaaaaattaagagagaatccactcttaaatgagaaactcaagttttaatatatttcaattgatgatg |
37759036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 494
Target Start/End: Complemental strand, 2185461 - 2185421
Alignment:
| Q |
454 |
aaatgagaaattcaagttttaatatatttcaattgatgatg |
494 |
Q |
| |
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|||||||||| ||||||||| |||||||||||||||||||| |
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| T |
2185461 |
aaatgagaaactcaagttttcatatatttcaattgatgatg |
2185421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 491
Target Start/End: Original strand, 21010429 - 21010472
Alignment:
| Q |
448 |
actcttaaatgagaaattcaagttttaatatatttcaattgatg |
491 |
Q |
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||||| |||||||||| ||||||||| ||||||||||||||||| |
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| T |
21010429 |
actctgaaatgagaaactcaagtttttatatatttcaattgatg |
21010472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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