View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447_low_2 (Length: 559)
Name: NF0447_low_2
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 79 - 559
Target Start/End: Complemental strand, 35093395 - 35092922
Alignment:
| Q |
79 |
agcagcacagatgcaggtaaagaggactgaagccccactagaaaatcaggcaccgtaaggcgatgcagatctccttataactatatagacaacacaacta |
178 |
Q |
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| T |
35093395 |
agcagcacagatgcatataaagaggactgaagccccactagaaaatcaggcaccgtaaggcgatgcagatctccttataactatatagacaacacaacta |
35093296 |
T |
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| Q |
179 |
catctgctgactttaatattaaacctgattaattacctttcctagagcgggcatgcatcaaaaagtataatttgactaatttatattgtatatatagtaa |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35093295 |
catctgctgactttaatattaaacctgattaattacctttcctagagcgggcatgcatcaaaaagtataatttgactaatttatattgtatatat-gtaa |
35093197 |
T |
|
| Q |
279 |
ttttcaatcaactccaaaattctacacaatctcaaaccaacctacccaagtaaacttgcatttgctggaattgatgagcttcccgtgcctgcaccctcag |
378 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35093196 |
ttttcaatcaactccaaaattctatacaatctcaaaccaacctacccaagtaaacttgcatttgctggaattgatgagcttcccgtgcctgcaccctcag |
35093097 |
T |
|
| Q |
379 |
tagcctctagatttgtctataagagagagacagataagagcatgagcatgagcatgaggaacacaaattaccaatagaggggaaaagacaaattgtcacc |
478 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35093096 |
tagcctctagatttgtctataagagagagacagataa------gagcatgagcatgaggaacacaaattaccaatagaggggaaaagacaaattgtcacc |
35093003 |
T |
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| Q |
479 |
aataagcttagagctgaagatcatcactatttgttatgttcatataatgcgattcagatatggggaagaacccacaaaaac |
559 |
Q |
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| T |
35093002 |
aataagtttagagctgaagatcatcactatttgttatgttcatataatgcgattcagatatggggaagaacccacaaaaac |
35092922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 312 - 558
Target Start/End: Complemental strand, 32584495 - 32584252
Alignment:
| Q |
312 |
aaaccaacctacccaagtaaacttgcatttgctggaattgatgagcttcccgtgcctgcaccctcagtagcctct---agatttgtctataagagagaga |
408 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||| ||||| || ||||||| |||||| |||| | |||||||||||| ||| ||| |
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| T |
32584495 |
aaaccaacttacccaagtaaacttgcatttcctggaattgatgaacttccatcgcttgcacccccagtagtctctgccatatttgtctataatagaaaga |
32584396 |
T |
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| Q |
409 |
cagataagagcatgagcatgagcatgaggaacacaaattaccaatagaggggaaaagacaaattgtcaccaataagc-ttagagctgaagatcatcacta |
507 |
Q |
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|||| || |||||||| |||||||||||||||| || | || ||||||| | ||||| ||| | |||||| |||||||||||||||||||||| |
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| T |
32584395 |
cagaaaa------gagcatgaacatgaggaacacaaataacaagtaaaggggaacatacaaaatgttaatgataagctttagagctgaagatcatcacta |
32584302 |
T |
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| Q |
508 |
tttgttatgttcatataatgcgattcagatatggggaagaacccacaaaaa |
558 |
Q |
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| T |
32584301 |
att-ttatgtacatatcatgcgatgcagatattgggaagaacacactaaaa |
32584252 |
T |
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