View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447_low_22 (Length: 285)
Name: NF0447_low_22
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 101 - 200
Target Start/End: Original strand, 39173521 - 39173620
Alignment:
| Q |
101 |
gtgagatgaagtgaaaactgagttatgatacaaagttaaaagtaatatatctcatggttaagaaatgcaatcagaacattagcaagatatgacctcactt |
200 |
Q |
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| T |
39173521 |
gtgagatgaagtgaaaactgagttatgatacaaagtttaaagtaatatatctcatgattaagaaatgcaatcagaacattagcaagatatgacttcactt |
39173620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 39169118 - 39169160
Alignment:
| Q |
101 |
gtgagatgaagtgaaaactgagttatgatacaaagttaaaagt |
143 |
Q |
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| T |
39169118 |
gtgagatgaagtgaaaactgagttatgatacaaagttagaagt |
39169160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 39178734 - 39178771
Alignment:
| Q |
161 |
agaaatgcaatcagaacattagcaagatatgacctcac |
198 |
Q |
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| T |
39178734 |
agaaatgcaatcacaacattagcaagatatgtcctcac |
39178771 |
T |
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