View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447_low_26 (Length: 267)
Name: NF0447_low_26
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 2368952 - 2369079
Alignment:
| Q |
96 |
caagagccctgttttatctcttctcaatcccttgcataatggtgttagagaattgaattcacaacttaaataaaaggattcattgaagaatttaacagga |
195 |
Q |
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| T |
2368952 |
caagagccctgttttatctcttctcaatcccttgcataatggtgttagagaattgaattcacaacttaaataaaaggattcattgaagaatttaacaaga |
2369051 |
T |
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| Q |
196 |
cttggagacaatttcaaatcctaaatat |
223 |
Q |
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| T |
2369052 |
cttggagacaatttcaaatcctaaatat |
2369079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 2368872 - 2368918
Alignment:
| Q |
19 |
agagagtagtttgttagtactacctttcagaacgaagtatatcctac |
65 |
Q |
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| T |
2368872 |
agagagtagtttgttagtactacctttcggaacggagtatatcctac |
2368918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 42302726 - 42302853
Alignment:
| Q |
96 |
caagagccctgttttatctcttctcaatcccttgcataatggtgttagagaattgaattcacaacttaaataaaaggattcattgaagaatttaacagga |
195 |
Q |
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| T |
42302726 |
caagagccttgttttatctcttctcaatcccttgcataatggtgttagagaattgaattaacaacttaaataaaaggattcattgaagaatttaacagga |
42302825 |
T |
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| Q |
196 |
cttggagacaatttcaaatcctaaatat |
223 |
Q |
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| T |
42302826 |
cttggagacaatttcaaagcctaaatat |
42302853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 42302649 - 42302694
Alignment:
| Q |
16 |
agcagagagtagtttgttagtactacctttcagaacgaagtatatc |
61 |
Q |
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| T |
42302649 |
agcagagagtagtttgttagtactacctttcagaacggagtatatc |
42302694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 14208335 - 14208456
Alignment:
| Q |
96 |
caagagccctgttttatctcttctcaatcccttgcataatggtgttagagaattgaattcacaacttaaataaaaggattcattgaagaatttaacagga |
195 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14208335 |
caagagccctgttttatctattctcaataccttgcataatggtgttagagaattgaa------acttaaataaaaggattcattgaagaatttaacagga |
14208428 |
T |
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| Q |
196 |
cttggagacaatttcaaatcctaaatat |
223 |
Q |
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|||||| ||||||||| | ||||||||| |
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| T |
14208429 |
cttggacacaatttcatagcctaaatat |
14208456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 19789957 - 19789896
Alignment:
| Q |
108 |
tttatctcttctcaatcccttgcataatggtgttagagaattgaattcacaacttaaataaaa |
170 |
Q |
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||||||| |||||||||||||| ||||||||||| || | ||||||||||||||||||||||| |
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| T |
19789957 |
tttatctattctcaatcccttgtataatggtgtt-gaaagttgaattcacaacttaaataaaa |
19789896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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