View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447_low_3 (Length: 472)
Name: NF0447_low_3
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 52925908 - 52926221
Alignment:
| Q |
1 |
ctacttggttaagttgaagaagacatgactgaccacaagaagctttgacttgttattccatcctctctgaagagtcatttgactcaatcttaaacctaaa |
100 |
Q |
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| T |
52925908 |
ctacttggttaagttgaagaagacatgactgaccacaagaagctttgacttgttattccatcctctctgaagagtcatttgactcaatcttaaacctaaa |
52926007 |
T |
|
| Q |
101 |
acctttcccataaactccaaaagttcattgttagcttctccacgagcagcaggagcagctacagtgacacgaacatcatcagcatttactctggtgattg |
200 |
Q |
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| T |
52926008 |
acctttcccataaactccaaaagttcattgttagcttctccacgagcagcaggagcagctacagtgacacgaacatcatcagcatttactctggtgattg |
52926107 |
T |
|
| Q |
201 |
cggagcggtgagcacgatcctcaacttcaatagcaagttgaacaagaccaccttcaagagtggaaatgcagggtggaacgggagcatcctgtgggttggt |
300 |
Q |
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| T |
52926108 |
cggagcggtgagcacgatcttcaacttcaatagcaagttgaacaagaccaccttcaagagtggaaatgcagggtggaacgggagcatcctgtgggttggt |
52926207 |
T |
|
| Q |
301 |
ttcagcagcaacag |
314 |
Q |
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|||||||||||||| |
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| T |
52926208 |
ttcagcagcaacag |
52926221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 412 - 452
Target Start/End: Complemental strand, 33548952 - 33548912
Alignment:
| Q |
412 |
cttcattcattcaatttaataaataatacatcggacaacac |
452 |
Q |
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| T |
33548952 |
cttcattcattcaatttaataaataatacatcggacaacac |
33548912 |
T |
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