View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0447_low_30 (Length: 255)

Name: NF0447_low_30
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0447_low_30
NF0447_low_30
[»] chr6 (12 HSPs)
chr6 (38-169)||(27851213-27851344)
chr6 (38-161)||(20734157-20734279)
chr6 (38-161)||(2201139-2201261)
chr6 (38-161)||(22420987-22421109)
chr6 (38-132)||(34296979-34297072)
chr6 (40-169)||(25956569-25956697)
chr6 (49-108)||(19399830-19399889)
chr6 (49-108)||(18927896-18927954)
chr6 (39-108)||(25956715-25956783)
chr6 (40-100)||(31630622-31630681)
chr6 (22-57)||(27851338-27851373)
chr6 (59-106)||(27851129-27851176)
[»] chr8 (11 HSPs)
chr8 (25-169)||(41680819-41680962)
chr8 (39-169)||(21579917-21580046)
chr8 (35-161)||(32807285-32807410)
chr8 (39-169)||(29763579-29763707)
chr8 (38-136)||(42560237-42560334)
chr8 (40-166)||(39833887-39834013)
chr8 (51-100)||(18760615-18760664)
chr8 (40-108)||(27472391-27472458)
chr8 (40-108)||(38550086-38550153)
chr8 (39-108)||(1327119-1327187)
chr8 (49-108)||(3273212-3273270)
[»] scaffold1351 (1 HSPs)
scaffold1351 (38-169)||(1578-1708)
[»] chr7 (16 HSPs)
chr7 (38-161)||(9320439-9320561)
chr7 (49-169)||(30820977-30821096)
chr7 (49-169)||(38480249-38480368)
chr7 (38-161)||(11092757-11092879)
chr7 (38-144)||(11085036-11085141)
chr7 (49-169)||(36685971-36686090)
chr7 (38-136)||(15213744-15213841)
chr7 (40-144)||(15439322-15439425)
chr7 (39-108)||(8468386-8468454)
chr7 (39-108)||(14270138-14270206)
chr7 (40-108)||(45847735-45847802)
chr7 (110-169)||(17232666-17232725)
chr7 (39-100)||(17232588-17232648)
chr7 (90-169)||(9389705-9389783)
chr7 (110-163)||(8468471-8468524)
chr7 (49-108)||(37727648-37727707)
[»] scaffold0737 (1 HSPs)
scaffold0737 (39-161)||(6389-6510)
[»] chr5 (14 HSPs)
chr5 (39-169)||(12122232-12122361)
chr5 (49-169)||(21557766-21557885)
chr5 (38-164)||(24212385-24212510)
chr5 (49-169)||(21555100-21555219)
chr5 (38-138)||(35852666-35852765)
chr5 (38-132)||(36460219-36460312)
chr5 (40-169)||(5889124-5889252)
chr5 (49-169)||(31455089-31455211)
chr5 (49-169)||(31455702-31455824)
chr5 (52-169)||(30615768-30615883)
chr5 (68-163)||(17875232-17875326)
chr5 (49-108)||(29915177-29915235)
chr5 (39-108)||(5889269-5889337)
chr5 (109-169)||(21741559-21741619)
[»] chr3 (16 HSPs)
chr3 (49-169)||(31415416-31415535)
chr3 (38-147)||(11912955-11913063)
chr3 (49-169)||(31224675-31224794)
chr3 (38-143)||(6808175-6808279)
chr3 (38-169)||(15447710-15447837)
chr3 (39-108)||(49969963-49970032)
chr3 (65-164)||(12269620-12269718)
chr3 (110-169)||(18439864-18439923)
chr3 (59-108)||(20630210-20630259)
chr3 (90-169)||(1465419-1465497)
chr3 (49-108)||(1988953-1989012)
chr3 (49-136)||(49389772-49389859)
chr3 (39-108)||(18439941-18440009)
chr3 (66-108)||(30175304-30175346)
chr3 (70-108)||(40812058-40812096)
chr3 (39-108)||(12269529-12269597)
[»] chr2 (10 HSPs)
chr2 (38-169)||(24865480-24865610)
chr2 (38-169)||(22501001-22501131)
chr2 (38-169)||(22508935-22509065)
chr2 (38-169)||(7672268-7672392)
chr2 (38-109)||(2524439-2524510)
chr2 (49-108)||(6576446-6576505)
chr2 (49-108)||(24436263-24436321)
chr2 (68-136)||(22501128-22501195)
chr2 (68-136)||(22509062-22509129)
chr2 (68-108)||(24883673-24883713)
[»] chr4 (14 HSPs)
chr4 (39-169)||(33186114-33186243)
chr4 (38-144)||(15880734-15880839)
chr4 (40-169)||(13844584-13844712)
chr4 (49-164)||(46642884-46642997)
chr4 (39-108)||(52873251-52873319)
chr4 (40-100)||(362213-362272)
chr4 (49-108)||(9923369-9923427)
chr4 (49-108)||(11479432-11479490)
chr4 (49-88)||(14185252-14185291)
chr4 (49-108)||(35812211-35812269)
chr4 (59-108)||(13844498-13844547)
chr4 (90-159)||(15190360-15190428)
chr4 (39-108)||(46642793-46642861)
chr4 (90-169)||(15099383-15099461)
[»] scaffold0599 (2 HSPs)
scaffold0599 (38-147)||(4649-4757)
scaffold0599 (38-147)||(231-339)
[»] scaffold0071 (1 HSPs)
scaffold0071 (38-169)||(14352-14482)
[»] chr1 (13 HSPs)
chr1 (38-161)||(51274298-51274420)
chr1 (25-120)||(51326904-51326998)
chr1 (38-151)||(12328565-12328677)
chr1 (38-109)||(8885468-8885539)
chr1 (40-169)||(28194397-28194525)
chr1 (40-169)||(43697418-43697546)
chr1 (90-169)||(20636883-20636961)
chr1 (39-108)||(28194543-28194611)
chr1 (39-108)||(43543069-43543137)
chr1 (90-163)||(49261380-49261452)
chr1 (70-108)||(48301083-48301121)
chr1 (39-108)||(43697332-43697400)
chr1 (40-108)||(46382652-46382717)
[»] scaffold0395 (1 HSPs)
scaffold0395 (50-169)||(10907-11025)
[»] scaffold0815 (1 HSPs)
scaffold0815 (53-169)||(496-611)
[»] scaffold0116 (3 HSPs)
scaffold0116 (40-169)||(43732-43860)
scaffold0116 (40-169)||(47652-47780)
scaffold0116 (39-108)||(43878-43946)
[»] scaffold0434 (1 HSPs)
scaffold0434 (36-108)||(6767-6839)
[»] scaffold0061 (2 HSPs)
scaffold0061 (40-100)||(15439-15499)
scaffold0061 (40-100)||(24497-24557)
[»] scaffold0009 (2 HSPs)
scaffold0009 (110-162)||(85300-85352)
scaffold0009 (39-108)||(85207-85275)
[»] scaffold0100 (1 HSPs)
scaffold0100 (39-108)||(36142-36210)
[»] scaffold0080 (1 HSPs)
scaffold0080 (49-109)||(59327-59386)
[»] scaffold0810 (1 HSPs)
scaffold0810 (49-108)||(3004-3062)
[»] scaffold0004 (1 HSPs)
scaffold0004 (39-108)||(362964-363032)
[»] scaffold0001 (1 HSPs)
scaffold0001 (49-108)||(76962-77019)
[»] scaffold1137 (1 HSPs)
scaffold1137 (90-169)||(2300-2378)
[»] scaffold0802 (1 HSPs)
scaffold0802 (49-108)||(5478-5536)
[»] scaffold0335 (1 HSPs)
scaffold0335 (49-108)||(877-935)
[»] scaffold0513 (1 HSPs)
scaffold0513 (39-108)||(10963-11031)
[»] scaffold0371 (1 HSPs)
scaffold0371 (49-108)||(3136-3194)


Alignment Details
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 38 - 169
Target Start/End: Complemental strand, 27851344 - 27851213
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27851344 gatgatttaccttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaagattattattgatgg 27851245  T
Q  138 ttacttgatgtgtatgtttaaatgatgatgtc 169  Q
    ||||||| ||||||||||||||||||| ||||    
T  27851244 ttacttgttgtgtatgtttaaatgatgttgtc 27851213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 38 - 161
Target Start/End: Original strand, 20734157 - 20734279
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  20734157 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatgg 20734255  T
Q  138 ttacttgatgtgtatgtttaaatg 161  Q
    | ||||| ||  ||||||||||||    
T  20734256 tgacttgctgcatatgtttaaatg 20734279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 2201261 - 2201139
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  2201261 gatgatttactttgatgattaaatatgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatgg 2201163  T
Q  138 ttacttgatgtgtatgtttaaatg 161  Q
    | ||||| ||  ||||| ||||||    
T  2201162 tgacttgctgcatatgtctaaatg 2201139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 22421109 - 22420987
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||| |    
T  22421109 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatag 22421011  T
Q  138 ttacttgatgtgtatgtttaaatg 161  Q
    | ||||| ||  ||||| ||||||    
T  22421010 tgacttgttgcatatgtctaaatg 22420987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 34296979 - 34297072
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattatt 132  Q
    |||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||    
T  34296979 gatgatttactttgatgattagatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattatt 34297072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 25956569 - 25956697
Alignment:
Q  40 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 139  Q
    |||||||  |||||||||||||||||||| || |||||| ||||||||  ||||||||| | ||| || | |||||||||||| ||||||||||||||||    
T  25956569 tgatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatggagttgcaaat-gttatatatgaagattattattgatggtt 25956667  T
Q  140 acttgatgtgtatgtttaaatgatgatgtc 169  Q
    ||||| ||| ||||||||||||||| ||||    
T  25956668 acttgctgtatatgtttaaatgatgttgtc 25956697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 19399889 - 19399830
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  19399889 ttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaat 19399830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 18927954 - 18927896
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    |||||||||||||||||||  ||||||||||||||||||| ||||||||||| |||||||    
T  18927954 ttgatgattaaatgtgaaag-atttatatattgtgaaagatgttgatatgaagttgtaat 18927896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 25956715 - 25956783
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| | ||||||||| |||||||    
T  25956715 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgctgatatgaagttgtaat 25956783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 31630622 - 31630681
Alignment:
Q  40 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaa 100  Q
    |||||||  ||||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  31630622 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaa 31630681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 27851373 - 27851338
Alignment:
Q  22 cagagaggatgaataagatgatttatattgatgatt 57  Q
    ||||||||||||||||||||||||||||||||||||    
T  27851373 cagagaggatgaataagatgatttatattgatgatt 27851338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 27851176 - 27851129
Alignment:
Q  59 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgta 106  Q
    ||||||| |||||||||||||||||||||| | ||||||||| |||||    
T  27851176 aatgtgagaatatttatatattgtgaaagatgctgatatgaagttgta 27851129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 25 - 169
Target Start/End: Original strand, 41680819 - 41680962
Alignment:
Q  25 agaggatgaataagatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaa 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||| |||||||||||||  |    
T  41680819 agaggatgaataagatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagatattgatatcaaattgtaa-ttgttatatatgatga 41680917  T
Q  125 ttattattgatggttacttgatgtgtatgtttaaatgatgatgtc 169  Q
    |||||||||||||| ||||| ||  |||||||||||| |||||||    
T  41680918 ttattattgatggtgacttgctgcatatgtttaaatggtgatgtc 41680962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 39 - 169
Target Start/End: Original strand, 21579917 - 21580046
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggt 138  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||    
T  21579917 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatatatgataattattattgatggt 21580015  T
Q  139 tacttgatgtgtatgtttaaatgatgatgtc 169  Q
     ||||| ||  ||||||||||||||| ||||    
T  21580016 gacttgctgcatatgtttaaatgatgttgtc 21580046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 32807410 - 32807285
Alignment:
Q  35 taagatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattga 134  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||    
T  32807410 taagatgattaatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattga 32807312  T
Q  135 tggttacttgatgtgtatgtttaaatg 161  Q
    |||| ||||| ||  ||||| ||||||    
T  32807311 tggtgacttgctgcatatgtctaaatg 32807285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 169
Target Start/End: Original strand, 29763579 - 29763707
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggt 138  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  |||||||| ||||||    
T  29763579 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatatatgatgattattatcgatggt 29763677  T
Q  139 tacttgatgtgtatgtttaaatgatgatgtc 169  Q
     | ||| ||  ||||||||||||||||||||    
T  29763678 ga-ttgctgcatatgtttaaatgatgatgtc 29763707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 42560237 - 42560334
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatg 136  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||  |||||||||||||    
T  42560237 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaatacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatg 42560334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 166
Target Start/End: Complemental strand, 39834013 - 39833887
Alignment:
Q  40 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 139  Q
    |||||||  |||||||||||||||||||| || ||||||  ||||| |  ||||||||||| ||| || | |||||||||||| ||||||||||||||||    
T  39834013 tgatttacgttgatgattaaatgtgaaaagatctatataacgtgaatgttgttgatatgaagttgcaaatggttatatatgaagattattattgatggtt 39833914  T
Q  140 acttgatgtgtatgtttaaatgatgat 166  Q
    ||| | ||| |||||||||||||||||    
T  39833913 actcgctgtatatgtttaaatgatgat 39833887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 18760664 - 18760615
Alignment:
Q  51 gatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaa 100  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  18760664 gatgattaaatgtgaaaagatttatatattgtgaaagatgttgatatgaa 18760615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 27472391 - 27472458
Alignment:
Q  40 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    |||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  27472391 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 27472458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 38550086 - 38550153
Alignment:
Q  40 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    |||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  38550086 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 38550153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 1327119 - 1327187
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||  ||||||||||| ||||| ||||||||||||||||||| || ||||||||||| |||||||    
T  1327119 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaacgatgttgatatgaagttgtaat 1327187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 3273270 - 3273212
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    |||||||||||||||||||  ||||||||||||||||| | |||| |||||| |||||||    
T  3273270 ttgatgattaaatgtgaaag-atttatatattgtgaaaaatgttggtatgaagttgtaat 3273212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold1351
Description:

Target: scaffold1351; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 38 - 169
Target Start/End: Complemental strand, 1708 - 1578
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||  ||||||||||||||    
T  1708 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatataagatgattattattgatgg 1610  T
Q  138 ttacttgatgtgtatgtttaaatgatgatgtc 169  Q
    | ||||||||  ||||||||||||||| ||||    
T  1609 tgacttgatgcatatgtttaaatgatgttgtc 1578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 38 - 161
Target Start/End: Original strand, 9320439 - 9320561
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  9320439 gatgatttattttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatgg 9320537  T
Q  138 ttacttgatgtgtatgtttaaatg 161  Q
    | ||||| ||  ||||| ||||||    
T  9320538 tgacttgttgcatatgtctaaatg 9320561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 30820977 - 30821096
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgt 148  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||  ||||||||||||||| ||||| ||     
T  30820977 ttgatgattaaatgtgaaaatatttatatattgtgaaatacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatggtaacttgctgc 30821075  T
Q  149 gtatgtttaaatgatgatgtc 169  Q
     ||||||||||||||| ||||    
T  30821076 atatgtttaaatgatgttgtc 30821096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 49 - 169
Target Start/End: Complemental strand, 38480368 - 38480249
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgt 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  ||||||||||||||| ||||| ||     
T  38480368 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatggtgacttgctgc 38480270  T
Q  149 gtatgtttaaatgatgatgtc 169  Q
     ||| ||||||||||| ||||    
T  38480269 atatatttaaatgatgttgtc 38480249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 11092879 - 11092757
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||  ||||||||||||||    
T  11092879 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaaattgtaa-ttgttatatatgatgattattattgatgg 11092781  T
Q  138 ttacttgatgtgtatgtttaaatg 161  Q
    | ||||| ||  || |||||||||    
T  11092780 tgacttgttgcatacgtttaaatg 11092757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 11085141 - 11085036
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  11085141 gatgatttactttgatgattaaatgtgaaactatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatgg 11085043  T
Q  138 ttacttg 144  Q
    | |||||    
T  11085042 tgacttg 11085036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 36685971 - 36686090
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgt 148  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||||  ||||||||||||||| ||||| ||     
T  36685971 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgctgatatgaagttttaa-ttgttatatatgatgattattattgatggtgacttgctgc 36686069  T
Q  149 gtatgtttaaatgatgatgtc 169  Q
     ||||||||||||||| ||||    
T  36686070 atatgtttaaatgatgttgtc 36686090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 15213841 - 15213744
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatg 136  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||  |||||||||||||    
T  15213841 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacattgatatgaaattgtaa-ttgttatatatgatgattattattgatg 15213744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 15439425 - 15439322
Alignment:
Q  40 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 139  Q
    |||||||  |||||||||||||||||||| || ||||   ||||||||  ||||||||||| |||||||| |||||||||||| ||||||||||||||||    
T  15439425 tgatttacgttgatgattaaatgtgaaaagatctatactatgtgaaagttgttgatatgaagttgtaatt-gttatatatgaagattattattgatggtt 15439327  T
Q  140 acttg 144  Q
    |||||    
T  15439326 acttg 15439322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 8468454 - 8468386
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  8468454 atgatttactttgatgattaa-tgtgataatatttatatattgtgaaagatgttgatatgaagttgtaat 8468386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 14270138 - 14270206
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  14270138 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 14270206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 45847735 - 45847802
Alignment:
Q  40 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    |||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  45847735 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 45847802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 17232725 - 17232666
Alignment:
Q  110 tgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 169  Q
    ||||| ||||||| ||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  17232725 tgttacatatgaagattattaatgatggttacttgttgtatatgtttaaatgatgatgtc 17232666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 17232648 - 17232588
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaa 100  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  17232648 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaa 17232588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 9389705 - 9389783
Alignment:
Q  90 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 169  Q
    ||||||||||| ||| |||| | |||| ||||| ||||||| ||||||||||||| ||| ||||||||||||||| ||||    
T  9389705 gttgatatgaagttgaaatt-gatatacatgaagattattaatgatggttacttgctgtatatgtttaaatgatgttgtc 9389783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 8468524 - 8468471
Alignment:
Q  110 tgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgat 163  Q
    ||||| ||||||| ||||||| ||||||||||||| ||| ||||||||||||||    
T  8468524 tgttacatatgaagattattaatgatggttacttgttgtatatgtttaaatgat 8468471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 37727648 - 37727707
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    |||||||||||||||||||| || |||||| ||||||||  || |||||||| |||||||    
T  37727648 ttgatgattaaatgtgaaaagatctatataatgtgaaagttgtagatatgaagttgtaat 37727707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 161
Target Start/End: Original strand, 6389 - 6510
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggt 138  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||    
T  6389 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatggt 6487  T
Q  139 tacttgatgtgtatgtttaaatg 161  Q
     ||||| ||  ||||||||||||    
T  6488 gacttgctgcatatgtttaaatg 6510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 169
Target Start/End: Original strand, 12122232 - 12122361
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggt 138  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  |||||||||||||||    
T  12122232 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatggt 12122330  T
Q  139 tacttgatgtgtatgtttaaatgatgatgtc 169  Q
     |||||  |  ||||||||||||||||||||    
T  12122331 gacttgcggcatatgtttaaatgatgatgtc 12122361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 21557766 - 21557885
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgt 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  |||||||||||| || ||||| ||     
T  21557766 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatagtgacttgctgc 21557864  T
Q  149 gtatgtttaaatgatgatgtc 169  Q
     ||||||||||||||| ||||    
T  21557865 atatgtttaaatgatgttgtc 21557885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 164
Target Start/End: Complemental strand, 24212510 - 24212385
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  |||| |||||||||    
T  24212510 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatatatgatgattaatattgatgg 24212412  T
Q  138 ttacttgatgtgtatgtttaaatgatg 164  Q
    | ||||| ||  ||||| |||||||||    
T  24212411 tgacttgctgcatatgtctaaatgatg 24212385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 21555100 - 21555219
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgt 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |||||||||||||  ||||||||||||||| ||||| ||     
T  21555100 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgacataaagttgtaa-ttgttatatatgatgattattattgatggtgacttgctgc 21555198  T
Q  149 gtatgtttaaatgatgatgtc 169  Q
     ||||||||||||||| ||||    
T  21555199 atatgtttaaatgatgttgtc 21555219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 35852765 - 35852666
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||  ||||||||||||||    
T  35852765 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatacgatgattattattgatgg 35852667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 132
Target Start/End: Complemental strand, 36460312 - 36460219
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattatt 132  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||    
T  36460312 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattatt 36460219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 5889124 - 5889252
Alignment:
Q  40 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 139  Q
    |||||||  |||||||||||||||||||| || |||||| ||||||||  ||||||||| | ||| |||| |||||| ||||| ||||||||||||||||    
T  5889124 tgatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatgtagttgcaatt-gttatacatgaagattattattgatggtt 5889222  T
Q  140 acttgatgtgtatgtttaaatgatgatgtc 169  Q
    ||||| ||| ||||||||||||||| ||||    
T  5889223 acttgctgtatatgtttaaatgatgttgtc 5889252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 49 - 169
Target Start/End: Complemental strand, 31455211 - 31455089
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaa---attattattgatggttacttga 145  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| | |||||| |||| |   ||||||||||||||| ||||||    
T  31455211 ttgatgattaaatgtgaaaatatttatatattgtgaaaaacgttgatattaagttgtaa-tcgttataaatgatattgattattattgatggtgacttga 31455113  T
Q  146 tgtgtatgtttaaatgatgatgtc 169  Q
    ||  ||||||||||||||| ||||    
T  31455112 tgcatatgtttaaatgatgttgtc 31455089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 49 - 169
Target Start/End: Complemental strand, 31455824 - 31455702
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaa---attattattgatggttacttga 145  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| | |||||| |||| |   ||||||||||||||| |||||     
T  31455824 ttgatgattaaatgtgaaaatatttatatattgtgaaaaacgttgatatgaagttgtaa-tcgttataaatgatattgattattattgatggtgacttgc 31455726  T
Q  146 tgtgtatgtttaaatgatgatgtc 169  Q
    ||  ||||||||||||||| ||||    
T  31455725 tgcatatgtttaaatgatgttgtc 31455702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 169
Target Start/End: Complemental strand, 30615883 - 30615768
Alignment:
Q  52 atgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgta 151  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||  |||  ||||||| ||||||| ||||| ||  ||    
T  30615883 atgattaaatgtgaaaatatt-atatattgtgaaagacgttgatatgaagttgtaa-ttgttataattgatgattattaatgatggtgacttgctgcata 30615786  T
Q  152 tgtttaaatgatgatgtc 169  Q
    |||||||| |||||||||    
T  30615785 tgtttaaacgatgatgtc 30615768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 17875326 - 17875232
Alignment:
Q  68 atatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgat 163  Q
    ||||||||||| ||  ||||||||||||||||| || ||||| |||||||||||  ||||||||||||||| ||||| ||  ||||||||||||||    
T  17875326 atatttatataatgataaagacgttgatatgaagttctaatt-gttatatatgatgattattattgatggtgacttgctgcatatgtttaaatgat 17875232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 29915177 - 29915235
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  29915177 ttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 29915235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 5889269 - 5889337
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| | ||||||||| |||||||    
T  5889269 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgctgatatgaagttgtaat 5889337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 21741559 - 21741619
Alignment:
Q  109 ttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 169  Q
    |||||||| ||||| ||||||| ||||||||||||| ||| ||||||||||||||| ||||    
T  21741559 ttgttatacatgaagattattaatgatggttacttgttgtatatgtttaaatgatgttgtc 21741619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 49 - 169
Target Start/End: Complemental strand, 31415535 - 31415416
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgt 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  ||||||||||||||| ||||| ||     
T  31415535 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatggtgacttgctgc 31415437  T
Q  149 gtatgtttaaatgatgatgtc 169  Q
     ||||||||||||||| ||||    
T  31415436 atatgtttaaatgatgttgtc 31415416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 11913063 - 11912955
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||     
T  11913063 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgattattattattgatgt 11912965  T
Q  138 ttacttgatg 147  Q
    | ||||||||    
T  11912964 tgacttgatg 11912955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 31224675 - 31224794
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgt 148  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||  ||||||||||||||| ||||| ||     
T  31224675 ttgatgattaaatgtgaaaatatttatataatgtgaaagacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatggtgacttgctgc 31224773  T
Q  149 gtatgtttaaatgatgatgtc 169  Q
     ||||||||||||||| ||||    
T  31224774 atatgtttaaatgatgttgtc 31224794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 6808279 - 6808175
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |  ||||||||||||||    
T  6808279 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatataatgattattattgatgg 6808181  T
Q  138 ttactt 143  Q
    | ||||    
T  6808180 tgactt 6808175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 15447710 - 15447837
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  |||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||||||   ||||||||||||||    
T  15447710 gatgatttactttgatgattaaatgtgaaaatattcatataatgtgaaagacgttgatatgaagttgtaa-ttgttatatatg---attattattgatgg 15447805  T
Q  138 ttacttgatgtgtatgtttaaatgatgatgtc 169  Q
    | ||||||||  ||||||||||||||| ||||    
T  15447806 tgacttgatgcatatgtttaaatgatgttgtc 15447837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 49969963 - 49970032
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  49969963 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaat 49970032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 12269718 - 12269620
Alignment:
Q  65 aaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatg 164  Q
    |||| ||||||||||||||||||  ||||||||||| ||||| ||| ||| ||||||| | |||||| | |||||||||| ||| |||||||||||||||    
T  12269718 aaaagatttatatattgtgaaagttgttgatatgaagttgtatttt-ttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatg 12269620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 18439864 - 18439923
Alignment:
Q  110 tgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 169  Q
    ||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  18439864 tgttatatatgaagattattattgatggttacttgttgtatatgtttaaatgatgttgtc 18439923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 20630210 - 20630259
Alignment:
Q  59 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  20630210 aatgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 20630259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 1465419 - 1465497
Alignment:
Q  90 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 169  Q
    ||||||||||| ||| |||| |||||| ||||| ||||||| ||||||||||||| | | ||||||||||||||| ||||    
T  1465419 gttgatatgaagttgaaatt-gttatacatgaagattattaatgatggttacttgctctatatgtttaaatgatgttgtc 1465497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 1988953 - 1989012
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    |||||||||||||||||||| || |||||| ||||||||  ||||||||||| |||||||    
T  1988953 ttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatgaagttgtaat 1989012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 49389772 - 49389859
Alignment:
Q  49 ttgatgattaaatgtgaaaatattt--atatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatg 136  Q
    |||||||||||||||||||||||||  |||||||||| |||  ||||||||||| |||||| ||||||||| |||  |||||| ||||||    
T  49389772 ttgatgattaaatgtgaaaatatttagatatattgtg-aagttgttgatatgaagttgtaa-ttgttatatttgatgattattgttgatg 49389859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 18439941 - 18440009
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||  ||||||||||| ||||| ||||| |||||||||||||||| | ||||||||| |||||||    
T  18439941 atgatttactttgatgattaa-tgtgagaatatctatatattgtgaaagatgatgatatgaagttgtaat 18440009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 30175304 - 30175346
Alignment:
Q  66 aaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||||||| ||||||||| ||||||||||| |||||||    
T  30175304 aaatatttatatactgtgaaagatgttgatatgaagttgtaat 30175346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 40812096 - 40812058
Alignment:
Q  70 atttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  40812096 atttatatattgtgaaagatgttgatatgaagttgtaat 40812058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 12269597 - 12269529
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||  ||||||||||| ||||| || ||||||| ||| |||| |||||||||||||| |||||||    
T  12269597 atgatttaagttgatgattaa-tgtgagaagatttataaattttgaaggacgttgatatgaagttgtaat 12269529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 24865480 - 24865610
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| ||  ||||||||||||||    
T  24865480 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaa-ttgttatataagatgattattattgatgg 24865578  T
Q  138 ttacttgatgtgtatgtttaaatgatgatgtc 169  Q
    | ||||||||  ||||||||||||||| ||||    
T  24865579 tgacttgatgcatatgtttaaatgatgttgtc 24865610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 38 - 169
Target Start/End: Complemental strand, 22501131 - 22501001
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||  |||| |||||||||    
T  22501131 gatgatttactttgatgattaaatgtgaaaatatttatataatgtgaaagacgttgatatgaagttgtaa-ttgttatataagatgattaatattgatgg 22501033  T
Q  138 ttacttgatgtgtatgtttaaatgatgatgtc 169  Q
    | ||||| ||  ||||||||||||||| ||||    
T  22501032 taacttgctgcatatgtttaaatgatgctgtc 22501001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 38 - 169
Target Start/End: Complemental strand, 22509065 - 22508935
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||  |||| |||||||||    
T  22509065 gatgatttactttgatgattaaatgtgaaaatatttatataatgtgaaagacgttgatatgaagttgtaa-ttgttatataagatgattaatattgatgg 22508967  T
Q  138 ttacttgatgtgtatgtttaaatgatgatgtc 169  Q
    | ||||| ||  ||||||||||||||| ||||    
T  22508966 taacttgctgcatatgtttaaatgatgctgtc 22508935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 7672268 - 7672392
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||       || |||||||||| ||  ||||||||||||||    
T  7672268 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatg-------aagttgttatataagatgattattattgatgg 7672360  T
Q  138 ttacttgatgtgtatgtttaaatgatgatgtc 169  Q
    | ||||||||  || |||||||||||| ||||    
T  7672361 tgacttgatgcatacgtttaaatgatgctgtc 7672392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 2524439 - 2524510
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatt 109  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2524439 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatcaaattgtaatt 2524510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 6576505 - 6576446
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    |||||||||||| ||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  6576505 ttgatgattaaaagtgaaaaaatttatatattgtgaaagatgttgatatgaagttgtaat 6576446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 24436321 - 24436263
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||    
T  24436321 ttgatgattaaatgtgaaag-atttatatattgtgaaagatgttgatatgaaattgtaat 24436263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 22501195 - 22501128
Alignment:
Q  68 atatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatg 136  Q
    ||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||  |||| ||||||||    
T  22501195 atatttatataatgtgaaagacgttgatatgaagttgtaa-ttgttatataagatgattaatattgatg 22501128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 22509129 - 22509062
Alignment:
Q  68 atatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatg 136  Q
    ||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||  |||| ||||||||    
T  22509129 atatttatataatgtgaaagacgttgatatgaagttgtaa-ttgttatataagatgattaatattgatg 22509062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 24883713 - 24883673
Alignment:
Q  68 atatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  24883713 atatttatatattgtgaaagatgttgatatgaagttgtaat 24883673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 33186243 - 33186114
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggt 138  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||  |||||||||||||||    
T  33186243 atgatttactttgatgattaaatgtgaaaatatttatatattatgaaagacgttgatatgaagttgtaa-ttgttatatatgatgattattattgatggt 33186145  T
Q  139 tacttgatgtgtatgtttaaatgatgatgtc 169  Q
     ||||| ||  | ||||||||||||||||||    
T  33186144 gacttgctgcatttgtttaaatgatgatgtc 33186114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 15880839 - 15880734
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  15880839 gatgatttactttgattattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgatgattattattgatgg 15880741  T
Q  138 ttacttg 144  Q
    | |||||    
T  15880740 tgacttg 15880734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 13844712 - 13844584
Alignment:
Q  40 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 139  Q
    |||||||  ||||||||||||||||||||||| |||||| ||||||||  ||||||||| | ||| || | |||||||||||| ||||||||||||||||    
T  13844712 tgatttacgttgatgattaaatgtgaaaatatctatataatgtgaaagttgttgatatggagttgcaaat-gttatatatgaagattattattgatggtt 13844614  T
Q  140 acttgatgtgtatgtttaaatgatgatgtc 169  Q
    ||||| ||| ||||||||||||||| ||||    
T  13844613 acttgttgtatatgtttaaatgatgttgtc 13844584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 46642997 - 46642884
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgt 148  Q
    ||||||||||| || ||||| ||||||||||||||||||  ||| ||||||| |||||||| |||| ||||||| | |||||||| |||||||||| |||    
T  46642997 ttgatgattaa-tgcgaaaagatttatatattgtgaaagttgttaatatgaagttgtaatt-gttacatatgaagaatattattggtggttacttgttgt 46642900  T
Q  149 gtatgtttaaatgatg 164  Q
     |||||||||||||||    
T  46642899 atatgtttaaatgatg 46642884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 52873251 - 52873319
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  52873251 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 52873319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 362272 - 362213
Alignment:
Q  40 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaa 100  Q
    |||||||  ||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  362272 tgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagacgttgatatgaa 362213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 9923427 - 9923369
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    |||||||||||||||||||  ||||||||||||||||||| ||||||||||| |||||||    
T  9923427 ttgatgattaaatgtgaaag-atttatatattgtgaaagatgttgatatgaagttgtaat 9923369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 11479432 - 11479490
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    |||||||||||||||||||  ||||||||||||||||||| ||||||||||| |||||||    
T  11479432 ttgatgattaaatgtgaaag-atttatatattgtgaaagatgttgatatgaagttgtaat 11479490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 14185291 - 14185252
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaaga 88  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  14185291 ttgatggttaaatgtgaaaatatttatatattgtgaaaga 14185252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 35812211 - 35812269
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    |||||||||||||||| ||  ||||||||||||||||||| ||||||||||| |||||||    
T  35812211 ttgatgattaaatgtggaag-atttatatattgtgaaagatgttgatatgaagttgtaat 35812269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 13844547 - 13844498
Alignment:
Q  59 aatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||| |||||||||||||||||||||| | ||||||||| |||||||    
T  13844547 aatgtgagaatatttatatattgtgaaagatgctgatatgaagttgtaat 13844498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 15190428 - 15190360
Alignment:
Q  90 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaa 159  Q
    ||||||||||| ||| |||| |||||| ||||| ||||||| ||||||||||||| ||| ||||||||||    
T  15190428 gttgatatgaagttgaaatt-gttatacatgaagattattaatgatggttacttgctgtatatgtttaaa 15190360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 46642861 - 46642793
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||  ||||||||||| ||||| || ||||||| | ||||||||||||||||||||| |||||||    
T  46642861 atgatttaatttgatgattaa-tgtgagaagatttataaactgtgaaagacgttgatatgaagttgtaat 46642793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 15099461 - 15099383
Alignment:
Q  90 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 169  Q
    ||||||||||| ||| |||| |||||| || || ||||||| ||||||||||||| ||| |||||||||| |||| ||||    
T  15099461 gttgatatgaagttgaaatt-gttatacataaagattattaatgatggttacttgctgtatatgtttaaaagatgttgtc 15099383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 4757 - 4649
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||     
T  4757 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgattattattattgatgt 4659  T
Q  138 ttacttgatg 147  Q
    | ||||||||    
T  4658 tgacttgatg 4649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 339 - 231
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||     
T  339 gatgatttactttgatgattatatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaa-ttgttatatatgattattattattgatgt 241  T
Q  138 ttacttgatg 147  Q
    | ||||||||    
T  240 tgacttgatg 231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 169
Target Start/End: Complemental strand, 14482 - 14352
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  |||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| |||||||||| ||  ||||||||||||||    
T  14482 gatgatttactttgatgattaaatgtgaaaatattcatataatgtgaaagacgttgatatgaagttgtaa-ttgttatataagatgattattattgatgg 14384  T
Q  138 ttacttgatgtgtatgtttaaatgatgatgtc 169  Q
    | ||||||||  ||||||||||||||| ||||    
T  14383 tgacttgatgcatatgtttaaatgatgttgtc 14352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 161
Target Start/End: Original strand, 51274298 - 51274420
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| ||  ||||||||||||||    
T  51274298 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagatgttgatatgaagttgtaa-ttgttatataagatgattattattgatgg 51274396  T
Q  138 ttacttgatgtgtatgtttaaatg 161  Q
    | ||||||||  ||||||||||||    
T  51274397 tgacttgatgcatatgtttaaatg 51274420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 51326998 - 51326904
Alignment:
Q  25 agaggatgaataagatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatg 120  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  51326998 agaggatgaataagatgattaatattgatgattaaatgtgaacatatttatatattatgaaagacgttgatatgaagttgtaa-ttgttatatatg 51326904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 12328565 - 12328677
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatgg 137  Q
    |||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||  ||||||||||||||    
T  12328565 gatgatttactttgatgattaaatttgaaaatatttatatattgtgaaagacgttgatatgaagatgtaa-ttgttatatatgatgattattattgatgg 12328663  T
Q  138 ttacttgatgtgta 151  Q
    | ||||| ||||||    
T  12328664 tgacttgctgtgta 12328677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 8885539 - 8885468
Alignment:
Q  38 gatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatt 109  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8885539 gatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatt 8885468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 28194397 - 28194525
Alignment:
Q  40 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 139  Q
    |||||||  |||||||||||||||||||| || |||||| ||||||||  ||||||||| | ||| || | |||||||||||| ||||||||||||||||    
T  28194397 tgatttacgttgatgattaaatgtgaaaaaatctatataatgtgaaagttgttgatatgtagttgcaaat-gttatatatgaagattattattgatggtt 28194495  T
Q  140 acttgatgtgtatgtttaaatgatgatgtc 169  Q
    ||||| ||| ||||||||||||||| ||||    
T  28194496 acttgctgtatatgtttaaatgatgttgtc 28194525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 43697546 - 43697418
Alignment:
Q  40 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 139  Q
    |||||||  |||||||||||||||||||| || |||||| ||||||||  ||||||||| | ||| || | |||||||||||| |||||||||| |||||    
T  43697546 tgatttaagttgatgattaaatgtgaaaagatctatatagtgtgaaagttgttgatatggagttgcaaat-gttatatatgaagattattattgttggtt 43697448  T
Q  140 acttgatgtgtatgtttaaatgatgatgtc 169  Q
    ||||| ||| |||||||| |||||| ||||    
T  43697447 acttgctgtatatgtttatatgatgctgtc 43697418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 20636961 - 20636883
Alignment:
Q  90 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 169  Q
    ||||| ||||| |||||||| |||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  20636961 gttgacatgaagttgtaatt-gttatacatgaatattattattgatggttacttgctgtatatgtttaaatgatgttgtc 20636883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 28194543 - 28194611
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  28194543 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 28194611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 43543137 - 43543069
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  43543137 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 43543069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 49261452 - 49261380
Alignment:
Q  90 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgat 163  Q
    ||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||| | | ||||||||||||||    
T  49261452 gttgatatgaagttgtaatt-gttatacatgaagattattattgatggttacttgttatatatgtttaaatgat 49261380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 48301121 - 48301083
Alignment:
Q  70 atttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  48301121 atttatatattgtgaaagatgttgatatgaagttgtaat 48301083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 43697400 - 43697332
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||  ||||||||||| ||||| | |||| ||||||||||||||| | ||||||||| |||||||    
T  43697400 atgatttactttgatgattaa-tgtgagattattgatatattgtgaaagatgctgatatgaagttgtaat 43697332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 46382652 - 46382717
Alignment:
Q  40 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    |||||||  ||||||||||| ||||| ||||||||||  |||||||||| ||||||||||| |||||||    
T  46382652 tgatttactttgatgattaa-tgtgagaatatttata--ttgtgaaagatgttgatatgaagttgtaat 46382717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 50 - 169
Target Start/End: Complemental strand, 11025 - 10907
Alignment:
Q  50 tgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtg 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||  |||||||||||| || ||||| ||      
T  11025 tgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaatttttaa-ttgttatatatgatgattattattgattgtgacttgctgca 10927  T
Q  150 tatgtttaaatgatgatgtc 169  Q
    ||||||||||||||| ||||    
T  10926 tatgtttaaatgatgttgtc 10907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 611 - 496
Alignment:
Q  53 tgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtat 152  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||  ||||||||||||||| ||||| ||  |||    
T  611 tgattaaatgagaaaatatttatatattgtgaaagacgttgatatgaaattataa-ttgttatatatgatgattattattgatggtgacttgctgcatat 513  T
Q  153 gtttaaatgatgatgtc 169  Q
    ||| |||||||| ||||    
T  512 gttaaaatgatgttgtc 496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 43732 - 43860
Alignment:
Q  40 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 139  Q
    |||||||  |||||||||||||||||||| || |||||| ||||||||  ||||||||| | ||| || | |||||||||||| ||||||||||||||||    
T  43732 tgatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatggagttgcaaat-gttatatatgaagattattattgatggtt 43830  T
Q  140 acttgatgtgtatgtttaaatgatgatgtc 169  Q
    ||||| ||| ||||||||||||||| ||||    
T  43831 acttgctgtatatgtttaaatgatgttgtc 43860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 47652 - 47780
Alignment:
Q  40 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaaaattattattgatggtt 139  Q
    |||||||  |||||||||||||||||||| || |||||| ||||||||  ||||||||| | ||| || | |||||||||||| ||||||||||||||||    
T  47652 tgatttacgttgatgattaaatgtgaaaagatctatataatgtgaaagttgttgatatgtagttgcaaat-gttatatatgaagattattattgatggtt 47750  T
Q  140 acttgatgtgtatgtttaaatgatgatgtc 169  Q
    ||||| ||| ||||||||||||||| ||||    
T  47751 acttgttgtatatgtttaaatgatgttgtc 47780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 43878 - 43946
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| | ||||||||| |||||||    
T  43878 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgctgatatgaagttgtaat 43946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 6767 - 6839
Alignment:
Q  36 aagatgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  6767 aagatgatttactttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatggagttgtaat 6839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 15439 - 15499
Alignment:
Q  40 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaa 100  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  15439 tgatttaagttgatgattaaatgtgaaaatatttatatattgtgaaaaatgttgatatgaa 15499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 24497 - 24557
Alignment:
Q  40 tgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaa 100  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  24497 tgatttaagttgatgattaaatgtgaaaatatttatatattgtgaaaaatgttgatatgaa 24557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 85352 - 85300
Alignment:
Q  110 tgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatga 162  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  85352 tgttatatatgaagattattattgatggttacttgatgtatatgtttaaatga 85300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 85275 - 85207
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  85275 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 85207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 36142 - 36210
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  36142 atgatttactttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 36210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 59327 - 59386
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaatt 109  Q
    |||||||||||||||||||  ||||||||||||||||||| ||||||||||| ||||||||    
T  59327 ttgatgattaaatgtgaaag-atttatatattgtgaaagatgttgatatgaagttgtaatt 59386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 3062 - 3004
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||    
T  3062 ttgatgattaa-tgtgagaatatttatatattgtgaaagatgttgatatgaagttgtaat 3004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 363032 - 362964
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||  ||||||||||| ||||| |||||||||||||| ||||||| ||||||||||| |||||||    
T  363032 atgatttactttgatgattaa-tgtgagaatatttatatattttgaaagatgttgatatgaagttgtaat 362964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 77019 - 76962
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    |||||||||||||||||||||  ||||||||||||||||| || |||||||| |||||||    
T  77019 ttgatgattaaatgtgaaaat--ttatatattgtgaaagatgtggatatgaagttgtaat 76962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1137 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 2300 - 2378
Alignment:
Q  90 gttgatatgaaattgtaatttgttatatatgaaaattattattgatggttacttgatgtgtatgtttaaatgatgatgtc 169  Q
    ||||||||||| ||| |||| ||| || ||||| ||||||| ||||||||||||| ||| ||||||||||||||| ||||    
T  2300 gttgatatgaagttgaaatt-gttgtacatgaagattattaatgatggttacttgttgtatatgtttaaatgatgctgtc 2378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 5478 - 5536
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    |||||||||||||||||||  ||||||||||||||||||  ||||||||||| |||||||    
T  5478 ttgatgattaaatgtgaaag-atttatatattgtgaaaggtgttgatatgaagttgtaat 5536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 935 - 877
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    |||||||||||||||||||  ||| ||||||||||||||| ||||||||||| |||||||    
T  935 ttgatgattaaatgtgaaag-attaatatattgtgaaagatgttgatatgaagttgtaat 877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0513 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 10963 - 11031
Alignment:
Q  39 atgatttatattgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    ||||||||  ||||||||| | ||||| |||||||||||||||| ||||| ||||||||||| |||||||    
T  10963 atgatttactttgatgattta-tgtgagaatatttatatattgtaaaagatgttgatatgaagttgtaat 11031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 3194 - 3136
Alignment:
Q  49 ttgatgattaaatgtgaaaatatttatatattgtgaaagacgttgatatgaaattgtaat 108  Q
    |||||||||||||||||||  |||||||||| |||||| | ||||||||||| |||||||    
T  3194 ttgatgattaaatgtgaaag-atttatatatcgtgaaaaatgttgatatgaagttgtaat 3136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University