View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447_low_33 (Length: 253)
Name: NF0447_low_33
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447_low_33 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 3576253 - 3576496
Alignment:
| Q |
10 |
gcagagataaaggtgaaagaacttaagaatggtaggctagctatgttctctatgtttggattcttcgttcaggccattgtaactggaaagggacctctag |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3576253 |
gcagagttaaaggtgaaagaacttaagaatggtaggctagctatgttctctatgtttggattcttcgttcaggccattgtaaccggaaagggacctctag |
3576352 |
T |
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| Q |
110 |
agaaccttgccgaccatatcgctgaccccgtcaacaacaacgcttgggcctttgccacaaactttgtccccggaaagtgagcaaaaacttcataaaaact |
209 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3576353 |
agaaccttgccgaccatatcactgaccccgtcaacaacaacgcttgggcctttgccacaaactttgtccccggaaagtgagcaaaaacttcataaaaact |
3576452 |
T |
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| Q |
210 |
atgttaagttactagctcatacaagagtgtgaatttcgtgttat |
253 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3576453 |
atgttaagttactagctcatacaagagtgcgaatttcgtgttat |
3576496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 3578109 - 3578295
Alignment:
| Q |
10 |
gcagagataaaggtgaaagaacttaagaatggtaggctagctatgttctctatgtttggattcttcgttcaggccattgtaactggaaagggacctctag |
109 |
Q |
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|||||| ||||||| |||||||| |||||||| ||| ||||||||||||| ||||||||||| |||||||||||||||||||| | ||||||||| |||| |
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| T |
3578109 |
gcagagttaaaggttaaagaactcaagaatggcaggttagctatgttctcgatgtttggatttttcgttcaggccattgtaaccgaaaagggaccactag |
3578208 |
T |
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| Q |
110 |
agaaccttgccgaccatatcgctgaccccgtcaacaacaacgcttgggcctttgccacaaactttgtccccggaaagtgagcaaaaa |
196 |
Q |
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| T |
3578209 |
agaaccttgctgaccacatcgctgatccagtcaacagcaacgcttgggcctttgccacaaactttgttcccggaaagtgagaaaaaa |
3578295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 3584965 - 3584749
Alignment:
| Q |
10 |
gcagagataaaggtgaaagaacttaagaatggtaggctagctatgttctctatgtttggattcttcgttcaggccattgtaactggaaagggacctctag |
109 |
Q |
| |
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|||||| ||||||| |||||||| |||||||||||| |||| ||||||||||||||||||||||| ||||| ||||| || || |||||||||||| || |
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| T |
3584965 |
gcagagttaaaggttaaagaactcaagaatggtaggttagcgatgttctctatgtttggattctttgttcaagccatcgtgaccggaaagggacctttaa |
3584866 |
T |
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| Q |
110 |
agaaccttgccgaccatatcgctgaccccgtcaacaacaacgcttgggcctttgccacaaactttgtccccggaaagtgagcaaaaacttcataaaaact |
209 |
Q |
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| |||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| | || |||| |
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| T |
3584865 |
aaaaccttgctgaccacatcgctgacccagttaacaacaacgcttgggccttcgccacaaactttgtccccggaaagtgaacaatgactatacaataact |
3584766 |
T |
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| Q |
210 |
atgttaagttactagct |
226 |
Q |
| |
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|| | |||||||||||| |
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| T |
3584765 |
atctaaagttactagct |
3584749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 3564274 - 3564462
Alignment:
| Q |
10 |
gcagagataaaggtgaaagaacttaagaatggtaggctagctatgttctctatgtttggattcttcgttcaggccattgtaactggaaagggacctctag |
109 |
Q |
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|||||| | |||||||||||||| || ||||||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| | | |
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| T |
3564274 |
gcagagttgaaggtgaaagaactaaaaaatggtaggttagctatgttctctatgtttggatttttcgttcaagccattgtgactggaaagggacctatcg |
3564373 |
T |
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| Q |
110 |
agaaccttgccgaccatatcgctgaccccgtcaacaacaacgcttgggcctttgccacaaactttgtccccggaaagtgagcaaaaact |
198 |
Q |
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||||||| |||||||| | |||||||| || |||||||| |||||||||| ||||||||||||| ||||||||| | ||||| |||| |
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| T |
3564374 |
agaacctcgccgaccaccttgctgacccggttaacaacaatgcttgggcctacgccacaaactttgcccccggaaaataagcaataact |
3564462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 3569922 - 3570110
Alignment:
| Q |
10 |
gcagagataaaggtgaaagaacttaagaatggtaggctagctatgttctctatgtttggattcttcgttcaggccattgtaactggaaagggacctctag |
109 |
Q |
| |
|
|||||| | |||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| | | |
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| T |
3569922 |
gcagagttgaaggtgaaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattg |
3570021 |
T |
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| Q |
110 |
agaaccttgccgaccatatcgctgaccccgtcaacaacaacgcttgggcctttgccacaaactttgtccccggaaagtgagcaaaaact |
198 |
Q |
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| T |
3570022 |
agaacctcgctgaccaccttgctgatccagttaacaacaatgcttgggcctatgccacaaactttgcccctggaaaataagcaataact |
3570110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 13276212 - 13276380
Alignment:
| Q |
22 |
gtgaaagaacttaagaatggtaggctagctatgttctctatgtttggattcttcgttcaggccattgtaactggaaagggacctctagagaaccttgccg |
121 |
Q |
| |
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|||||||| |||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||| || |||||||||||| | || |||||||| | |
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| T |
13276212 |
gtgaaagagattaagaatggtaggttagccatgttttctatgtttggattcttcgttcaagccattgtgaccggaaagggacctttggaaaaccttgctg |
13276311 |
T |
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| Q |
122 |
accatatcgctgaccccgtcaacaacaacgcttgggcctttgccacaaactttgtccccggaaagtgag |
190 |
Q |
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|||| |||| ||||| |||||||||||||||||||||||||| ||||||||||| | |||||||||| |
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| T |
13276312 |
accacctcgcagacccggtcaacaacaacgcttgggcctttgctacaaactttgttcttggaaagtgag |
13276380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 3572969 - 3573157
Alignment:
| Q |
10 |
gcagagataaaggtgaaagaacttaagaatggtaggctagctatgttctctatgtttggattcttcgttcaggccattgtaactggaaagggacctctag |
109 |
Q |
| |
|
|||||| |||||||||||||||| || ||||| ||| |||||||||| || |||||||||||||| ||||| || |||||||| ||||| |||||| ||| |
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| T |
3572969 |
gcagagttaaaggtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatag |
3573068 |
T |
|
| Q |
110 |
agaaccttgccgaccatatcgctgaccccgtcaacaacaacgcttgggcctttgccacaaactttgtccccggaaagtgagcaaaaact |
198 |
Q |
| |
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|||| ||||| ||||| | |||||||| || |||||||| || ||||||| |||||||||||||| ||| ||||||||||| |||||| |
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| T |
3573069 |
agaatcttgctgaccaccttgctgacccagttaacaacaatgcatgggcctatgccacaaactttgcccctggaaagtgagccaaaact |
3573157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 189
Target Start/End: Original strand, 38357289 - 38357468
Alignment:
| Q |
10 |
gcagagataaaggtgaaagaacttaagaatggtaggctagctatgttctctatgtttggattcttcgttcaggccattgtaactggaaagggacctctag |
109 |
Q |
| |
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|||||| | ||||| || ||||| ||||| ||||| |||| |||||||||||||| |||||||| |||||||| ||||| || |||||||||||| | | |
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| T |
38357289 |
gcagagttgaaggttaaggaactcaagaacggtagattagccatgttctctatgttcggattctttgttcaggctattgtgaccggaaagggacctttgg |
38357388 |
T |
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| Q |
110 |
agaaccttgccgaccatatcgctgaccccgtcaacaacaacgcttgggcctttgccacaaactttgtccccggaaagtga |
189 |
Q |
| |
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||||||||||||| ||| | || ||||| |||||||||||||| ||||||| |||||| |||||||| |||||||||||| |
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| T |
38357389 |
agaaccttgccgatcatcttgccgacccagtcaacaacaacgcatgggcctatgccaccaactttgttcccggaaagtga |
38357468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 183
Target Start/End: Original strand, 42603125 - 42603259
Alignment:
| Q |
49 |
gctatgttctctatgtttggattcttcgttcaggccattgtaactggaaagggacctctagagaaccttgccgaccatatcgctgaccccgtcaacaaca |
148 |
Q |
| |
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||||||||||| |||||||| ||||| ||||| |||||||| ||||| ||||| || | |||||||| ||||||| | |||||||| || ||||| |
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| T |
42603125 |
gctatgttctccatgtttggtttctttgttcaagccattgttactggcaagggccccgttcagaacctttacgaccatgttgctgaccctgttgccaaca |
42603224 |
T |
|
| Q |
149 |
acgcttgggcctttgccacaaactttgtccccgga |
183 |
Q |
| |
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|||| ||||| | || || ||||| ||||||||| |
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| T |
42603225 |
acgcatgggcatacgctactaacttcgtccccgga |
42603259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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