View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447_low_47 (Length: 208)
Name: NF0447_low_47
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 5288547 - 5288429
Alignment:
| Q |
1 |
cactcgtcgatcgcaaccaccattaccaatttaccattaattaactgtgttatgctatatttttaggtttgattttgttgctcccagtaccttctttcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5288547 |
cactcgtcgatcgcaaccaccattaccaatttacgattaattaactgtgttatgctatatttttaggtttgattttgttgctcccagtaccttctttcaa |
5288448 |
T |
|
| Q |
101 |
ggttagttactgatctctg |
119 |
Q |
| |
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||||||||||||||||||| |
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| T |
5288447 |
ggttagttactgatctctg |
5288429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 8034866 - 8034984
Alignment:
| Q |
1 |
cactcgtcgatcgcaaccaccattaccaatttaccattaattaactgtgttatgctatatttttaggtttgattttgttgctcccagtaccttctttcaa |
100 |
Q |
| |
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||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
8034866 |
cactcgttgatcacaaccaccattatcaatttacaattaattaactgtgttatgctatgttcttaggtttgattttgttgctcccagtaccttctttcaa |
8034965 |
T |
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| Q |
101 |
ggttagttactgatctctg |
119 |
Q |
| |
|
|||| |||||||||||||| |
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| T |
8034966 |
ggttggttactgatctctg |
8034984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 51380148 - 51380100
Alignment:
| Q |
61 |
ttttaggtttgattttgttgctcccagtaccttctttcaaggttagtta |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51380148 |
ttttaggtttgattttgttgctcccagtaccttctttcaaggttagtta |
51380100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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