View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0447_low_5 (Length: 412)

Name: NF0447_low_5
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0447_low_5
NF0447_low_5
[»] chr1 (3 HSPs)
chr1 (30-396)||(35092683-35093047)
chr1 (30-65)||(35080965-35081000)
chr1 (30-65)||(35092540-35092575)
[»] chr6 (1 HSPs)
chr6 (246-344)||(32584226-32584323)
[»] chr7 (2 HSPs)
chr7 (30-65)||(28961765-28961800)
chr7 (30-65)||(28962241-28962276)
[»] chr4 (7 HSPs)
chr4 (30-65)||(40037132-40037167)
chr4 (30-65)||(40038383-40038418)
chr4 (30-65)||(40039433-40039468)
chr4 (30-65)||(40041211-40041246)
chr4 (30-65)||(40041374-40041409)
chr4 (30-65)||(40042331-40042366)
chr4 (30-65)||(40042654-40042689)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 30 - 396
Target Start/End: Original strand, 35092683 - 35093047
Alignment:
Q  30 cataatagtatctaaatttagccgcatatatcatatttgaattacactcaagatcataatagtattcattacaattaccctcaatatcataatagtattc 129  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||    
T  35092683 cataatagtatctaaatttagccacatatatcatatttgaattacactcaagatcataatagtattcattataattacactcaagatcataatagttttc 35092782  T
Q  130 ataaattacactcaagattttaaaccactggtgcatatatgggagggaatacctgtgccatttgnnnnnnnnnnnnngttgttgaggaaaaacccatttt 229  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||             |||||||||||||||||||||||    
T  35092783 ataaattacactcaagattttaaaccactggtgcatat--gggagggaatacctgtgccatttgttttttttttt--gttgttgaggaaaaacccatttt 35092878  T
Q  230 attaggagatttcttgtgtgatgaaagcacaattattccac--gtttttgtgggttcttccccatatctgaatcgcattatatgaacataacaaatagtg 327  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35092879 attaggagatttcttgtgtgatgaaagcacaattattccacatgtttttgtgggttcttccccatatctgaatcgcattatatgaacataacaaatagtg 35092978  T
Q  328 atgatcttcagctctaagcttattggtgacaatttgtcttttcccctctattggtaatctgtgctcctc 396  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  35092979 atgatcttcagctctaaacttattggtgacaatttgtcttttcccctctattggtaatttgtgttcctc 35093047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 35081000 - 35080965
Alignment:
Q  30 cataatagtatctaaatttagccgcatatatcatat 65  Q
    |||||||||||| |||||||||||||||||||||||    
T  35081000 cataatagtatcaaaatttagccgcatatatcatat 35080965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 35092540 - 35092575
Alignment:
Q  30 cataatagtatctaaatttagccgcatatatcatat 65  Q
    |||||||||||| |||||||||||||||||||||||    
T  35092540 cataatagtatcaaaatttagccgcatatatcatat 35092575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 344
Target Start/End: Original strand, 32584226 - 32584323
Alignment:
Q  246 tgtgatgaaagcacaattattccacgtttttgtgggttcttccccatatctgaatcgcattatatgaacataacaaatagtgatgatcttcagctctaa 344  Q
    |||||||| |||||||||||||  | |||| ||| ||||||||| ||||||| ||||||| ||||| |||||| || ||||||||||||||||||||||    
T  32584226 tgtgatgagagcacaattattctgcattttagtgtgttcttcccaatatctgcatcgcatgatatgtacataa-aattagtgatgatcttcagctctaa 32584323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 28961800 - 28961765
Alignment:
Q  30 cataatagtatctaaatttagccgcatatatcatat 65  Q
    |||||||||||| |||||||||||||||||||||||    
T  28961800 cataatagtatcaaaatttagccgcatatatcatat 28961765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 28962276 - 28962241
Alignment:
Q  30 cataatagtatctaaatttagccgcatatatcatat 65  Q
    |||||||||||| |||||||||||||||||||||||    
T  28962276 cataatagtatcaaaatttagccgcatatatcatat 28962241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 40037132 - 40037167
Alignment:
Q  30 cataatagtatctaaatttagccgcatatatcatat 65  Q
    |||||||||||| |||||||||||||||||||||||    
T  40037132 cataatagtatcaaaatttagccgcatatatcatat 40037167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 40038383 - 40038418
Alignment:
Q  30 cataatagtatctaaatttagccgcatatatcatat 65  Q
    |||||||||||| |||||||||||||||||||||||    
T  40038383 cataatagtatcaaaatttagccgcatatatcatat 40038418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 40039433 - 40039468
Alignment:
Q  30 cataatagtatctaaatttagccgcatatatcatat 65  Q
    |||||||||||| |||||||||||||||||||||||    
T  40039433 cataatagtatcaaaatttagccgcatatatcatat 40039468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 40041211 - 40041246
Alignment:
Q  30 cataatagtatctaaatttagccgcatatatcatat 65  Q
    |||||||||||| |||||||||||||||||||||||    
T  40041211 cataatagtatcaaaatttagccgcatatatcatat 40041246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 40041374 - 40041409
Alignment:
Q  30 cataatagtatctaaatttagccgcatatatcatat 65  Q
    |||||||||||| |||||||||||||||||||||||    
T  40041374 cataatagtatcaaaatttagccgcatatatcatat 40041409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 40042331 - 40042366
Alignment:
Q  30 cataatagtatctaaatttagccgcatatatcatat 65  Q
    |||||||||||| |||||||||||||||||||||||    
T  40042331 cataatagtatcaaaatttagccgcatatatcatat 40042366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 40042654 - 40042689
Alignment:
Q  30 cataatagtatctaaatttagccgcatatatcatat 65  Q
    |||||||||||| |||||||||||||||||||||||    
T  40042654 cataatagtatcaaaatttagccgcatatatcatat 40042689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University