View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0447_low_7 (Length: 391)
Name: NF0447_low_7
Description: NF0447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0447_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 22278325 - 22278664
Alignment:
| Q |
1 |
acaaacataatctgaataaacccagaaagtttacctatattcctcacccccaccccaaaaaagacaacataaaatagaattgatagcggaaatgatacct |
100 |
Q |
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| T |
22278325 |
acaaacataatctgaataaacctagaaaatttacctatattcctcacccccaccccaaaaaagacaacataaaatagaatcgatagaggaaatgatacct |
22278424 |
T |
|
| Q |
101 |
gaagaggctttgaagaagtaaatagcataaacatgaagagatgatggtacatacttcaacgcacaatttcatctttaatttctagccaaaagtctttgaa |
200 |
Q |
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| T |
22278425 |
gaagaggctttgaagaagtagatagcataaacatgaaaagatgatggtacatacttcaacgcacaatttcatcttttatttctagccaaaagtctttgaa |
22278524 |
T |
|
| Q |
201 |
aaaactaaaatttataccatccagaccagaactcttaaaacagtcccagatctccactttaacttcctcgaaattgaatagtttaatcaagacacgagac |
300 |
Q |
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| T |
22278525 |
aaaactaaaatttataccatccggaccagaactcttaaaacagtcccagatctccactttaacttcctcgaaattgaatagtttaatcaagacatgagac |
22278624 |
T |
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| Q |
301 |
aaactacgaaaatgtaaatcatccaccacatgtctgatct |
340 |
Q |
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| T |
22278625 |
aaactacgaaaatgtaaatcatccaccacatgtctgatct |
22278664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 21089945 - 21089887
Alignment:
| Q |
83 |
atagcggaaatgatacctgaagaggctttgaagaagtaaatagcataaacatgaagaga |
141 |
Q |
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| T |
21089945 |
atagaggaaatgatacctgaagggaatttgaagaaggaaatagcataaataggaagaga |
21089887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 17829460 - 17829525
Alignment:
| Q |
70 |
taaaatagaattgatagcggaaatgatacctgaagaggctttgaagaagtaaatagcataaacatg |
135 |
Q |
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| T |
17829460 |
taaaaaagaatcgatagaggagatgatacctgagggagctttgaagaagaaaatagcataatcatg |
17829525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 380706 - 380758
Alignment:
| Q |
89 |
gaaatgatacctgaagaggctttgaagaagtaaatagcataaacatgaagaga |
141 |
Q |
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|||||||||||||| || |||||||||||| ||| |||||| ||||| ||||| |
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| T |
380706 |
gaaatgatacctgatgaagctttgaagaaggaaagagcatagacatgcagaga |
380758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 41352634 - 41352565
Alignment:
| Q |
49 |
cccaccccaaaaaagacaacataaaatagaattgatagcggaaatgatacctgaagaggctttgaagaag |
118 |
Q |
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||||||| |||| | || |||||||||||||| |||| |||||||||| |||| | ||||||||||||| |
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| T |
41352634 |
cccaccctaaaagaaacgacataaaatagaatcaatagaggaaatgatatctgacggggctttgaagaag |
41352565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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