View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0448_high_1 (Length: 461)
Name: NF0448_high_1
Description: NF0448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0448_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 30 - 457
Target Start/End: Original strand, 4116251 - 4116677
Alignment:
| Q |
30 |
atcagcaatctcatcagttaatgtgataattttcgtgattttttcatcatttagtagtggattttgaatctcttgctgcaagaaacttctgagctcttgc |
129 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4116251 |
atcagcaatctcatcactcaatgtgataattttcgtgattttttcatcatttggtagtggattttgaatctcttgctgcaagaaacttctgagctcttgc |
4116350 |
T |
|
| Q |
130 |
tttctagttctcttagcatccaaaacctgaaattttgcttccaactccttcactgttggatcattgtttgctgtcatgattgattaattatttatgctta |
229 |
Q |
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|||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4116351 |
tttccagttctcttagcatccaaaacttgaatttttgcttccaactccttcactgttggatcattgtttgctgccatgattgattaattatttatgctta |
4116450 |
T |
|
| Q |
230 |
agttttgaaagtatgtgtatattacattacatgttaacagtgtagtatttatataacaagaattgaatctattaccatcataaatttccattgatggcaa |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
4116451 |
agttttgaaagtatgtgtatattacattacatgttaacagtgtagtatttatataacaagaattgaatctattgccatcataaattttcattgatggcaa |
4116550 |
T |
|
| Q |
330 |
agatttcaagaagaagataagnnnnnnnntaaggaaatttgataaacaagtttaactgggaagaaaagaggagaaaacgaaaggcaaaaataaaactaat |
429 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
4116551 |
agatttcaagaagaagataa-aaaacaaataaggaaatttgataaacaagtttaacggggaagaaaagaggagaaaatgaaaggcaaaaatgaaactaat |
4116649 |
T |
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| Q |
430 |
ctaaatttcgtgtgactatgcttgatat |
457 |
Q |
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||||||||||||||||||||||| |||| |
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| T |
4116650 |
ctaaatttcgtgtgactatgcttcatat |
4116677 |
T |
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