View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0448_high_11 (Length: 270)

Name: NF0448_high_11
Description: NF0448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0448_high_11
NF0448_high_11
[»] chr1 (2 HSPs)
chr1 (58-243)||(21032234-21032421)
chr1 (112-148)||(1704947-1704983)
[»] chr3 (1 HSPs)
chr3 (67-147)||(15796236-15796316)
[»] chr6 (2 HSPs)
chr6 (67-148)||(16766734-16766815)
chr6 (67-141)||(9522928-9523002)
[»] chr5 (4 HSPs)
chr5 (67-148)||(21522787-21522868)
chr5 (67-148)||(21533353-21533434)
chr5 (59-147)||(19579730-19579818)
chr5 (67-148)||(39698578-39698659)
[»] chr7 (2 HSPs)
chr7 (111-147)||(33994282-33994318)
chr7 (59-88)||(6028654-6028683)
[»] chr4 (2 HSPs)
chr4 (67-159)||(47264023-47264115)
chr4 (67-148)||(30982819-30982900)
[»] chr2 (1 HSPs)
chr2 (112-159)||(27084340-27084387)
[»] scaffold0136 (1 HSPs)
scaffold0136 (67-148)||(3790-3871)
[»] chr8 (2 HSPs)
chr8 (59-148)||(29447051-29447140)
chr8 (107-159)||(8343033-8343085)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 21032234 - 21032421
Alignment:
Q  58 ttaatttaatgtaattacaaatgtcggtgtcatgtgggtgttggatataacatatgtccaacaccgagacacgcctaatccaaagagtgtctctgattca 157  Q
    |||||| ||| |||||||||||||||||||| ||||||||| ||| |  |||| ||||| ||| ||||| ||||||||||||| |||||||| || ||||    
T  21032234 ttaattaaatataattacaaatgtcggtgtcgtgtgggtgtcggacacgacatgtgtccgacatcgagagacgcctaatccaaggagtgtctgtgcttca 21032333  T
Q  158 taccaatcctactc--atatnnnnnnntctatttatcttacaaacctaatcatttggtttgaaattttccaagcaaaagggtggtatt 243  Q
    ||||||||||||||  ||||       ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21032334 taccaatcctactcatatataaaaaaatctatttatcttacaaacctaatcatttgctttgaaattttccaagcaaaagggtggtatt 21032421  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 1704983 - 1704947
Alignment:
Q  112 tgtccaacaccgagacacgcctaatccaaagagtgtc 148  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  1704983 tgtccgacaccgagacacgcctaatccaaggagtgtc 1704947  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 15796316 - 15796236
Alignment:
Q  67 tgtaattacaaatgtcggtgtcatgtgggtgttggatataacatatgtccaacaccgagacacgcctaatccaaagagtgt 147  Q
    ||||||||||| |||||||||| ||| ||||| ||| | ||||  ||||||||||||  ||||||||||||||||||||||    
T  15796316 tgtaattacaattgtcggtgtcgtgtaggtgtcggacacaacacgtgtccaacaccggaacacgcctaatccaaagagtgt 15796236  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 16766734 - 16766815
Alignment:
Q  67 tgtaattacaaatgtcggtgtcatgtgggtgttggatataacatatgtccaacaccgagacacgcctaatccaaagagtgtc 148  Q
    ||||||||||| |||||||||| ||| ||||| ||| | ||||  ||||| |||||| |||||||||||||| |||| ||||    
T  16766734 tgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaagaatgtc 16766815  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 9522928 - 9523002
Alignment:
Q  67 tgtaattacaaatgtcggtgtcatgtgggtgttggatataacatatgtccaacaccgagacacgcctaatccaaa 141  Q
    ||||||||||| |||||||||  ||| ||||| ||||   |||  ||||| ||||||||||||||||||||||||    
T  9522928 tgtaattacaagtgtcggtgttgtgtcggtgtcggatccgacacgtgtccgacaccgagacacgcctaatccaaa 9523002  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 21522787 - 21522868
Alignment:
Q  67 tgtaattacaaatgtcggtgtcatgtgggtgttggatataacatatgtccaacaccgagacacgcctaatccaaagagtgtc 148  Q
    ||||||||||| |||||||||| ||| ||||| ||| |  |||  |||||  ||||| ||||||||||||||||||||||||    
T  21522787 tgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcctaatccaaagagtgtc 21522868  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 21533353 - 21533434
Alignment:
Q  67 tgtaattacaaatgtcggtgtcatgtgggtgttggatataacatatgtccaacaccgagacacgcctaatccaaagagtgtc 148  Q
    ||||||||||| |||||||||| ||| ||||| ||| |  |||  |||||  ||||| ||||||||||||||||||||||||    
T  21533353 tgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcctaatccaaagagtgtc 21533434  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 19579730 - 19579818
Alignment:
Q  59 taatttaatgtaattacaaatgtcggtgtcatgtgggtgttggatataacatatgtccaacaccgagacacgcctaatccaaagagtgt 147  Q
    ||||||| || |||||||| |||||||||| |||  |||| ||| |  ||||||||| ||||||| |||||||||||||| | ||||||    
T  19579730 taatttagtgcaattacaagtgtcggtgtcgtgtcagtgtcggacacgacatatgtctaacaccgggacacgcctaatccgaggagtgt 19579818  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 39698578 - 39698659
Alignment:
Q  67 tgtaattacaaatgtcggtgtcatgtgggtgttggatataacatatgtccaacaccgagacacgcctaatccaaagagtgtc 148  Q
    ||||||||||| |||| ||||| ||| ||||| ||| |  |||| | ||| ||||||||||||||||||||| | |||||||    
T  39698578 tgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacatgtatccgacaccgagacacgcctaatccgaggagtgtc 39698659  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 33994282 - 33994318
Alignment:
Q  111 atgtccaacaccgagacacgcctaatccaaagagtgt 147  Q
    |||||||||||||||||||||||||||||| ||||||    
T  33994282 atgtccaacaccgagacacgcctaatccaaggagtgt 33994318  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 88
Target Start/End: Original strand, 6028654 - 6028683
Alignment:
Q  59 taatttaatgtaattacaaatgtcggtgtc 88  Q
    ||||||||||||||||||||||||||||||    
T  6028654 taatttaatgtaattacaaatgtcggtgtc 6028683  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 47264023 - 47264115
Alignment:
Q  67 tgtaattacaaatgtcggtgtcatgtgggtgttggatataacatatgtccaacaccgagacacgcctaatccaaagagtgtctctgattcata 159  Q
    ||||||||||||||||| |||||||| |||||  ||||  ||| |||||  |||||  |||||||||||||| ||||| |||| || ||||||    
T  47264023 tgtaattacaaatgtcgatgtcatgttggtgtcagatacgacacatgtctgacaccaggacacgcctaatccgaagagcgtctgtgcttcata 47264115  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 148
Target Start/End: Complemental strand, 30982900 - 30982819
Alignment:
Q  67 tgtaattacaaatgtcggtgtcatgtgggtgttggatataacatatgtccaacaccgagacacgcctaatccaaagagtgtc 148  Q
    |||||||| || |||||||||| ||| |||||  || |  |||  ||||| |||||| ||||||||||||||||||||||||    
T  30982900 tgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccaaagagtgtc 30982819  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 27084340 - 27084387
Alignment:
Q  112 tgtccaacaccgagacacgcctaatccaaagagtgtctctgattcata 159  Q
    ||||||||||||||||||||||||||  | ||||||||||| ||||||    
T  27084340 tgtccaacaccgagacacgcctaatcggaggagtgtctctgcttcata 27084387  T

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Target: scaffold0136 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 148
Target Start/End: Complemental strand, 3871 - 3790
Alignment:
Q  67 tgtaattacaaatgtcggtgtcatgtgggtgttggatataacatatgtccaacaccgagacacgcctaatccaaagagtgtc 148  Q
    ||||||||||| |||| ||||| ||| ||||| ||| |  ||| |||||| ||| ||||||||||||||||| | |||||||    
T  3871 tgtaattacaagtgtcagtgtcgtgttggtgtcggacacgacacatgtccgacatcgagacacgcctaatccgaggagtgtc 3790  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 29447140 - 29447051
Alignment:
Q  59 taatttaatgtaattacaaatgtcggtgtcatgtgggtgttggatataacatatgtccaacaccgagacacgcctaatccaaagagtgtc 148  Q
    ||||| ||||||| ||||| |||||||||||||| ||||| ||| |  |||| ||||  |||||  |||||||||||||| | |||||||    
T  29447140 taattcaatgtaactacaagtgtcggtgtcatgtcggtgtcggacacgacatgtgtctgacaccaggacacgcctaatcctaggagtgtc 29447051  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 8343033 - 8343085
Alignment:
Q  107 acatatgtccaacaccgagacacgcctaatccaaagagtgtctctgattcata 159  Q
    |||| ||||| |||||| |||||||||||||| |||||||||| || ||||||    
T  8343033 acatgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcata 8343085  T

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