View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0448_high_4 (Length: 375)

Name: NF0448_high_4
Description: NF0448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0448_high_4
NF0448_high_4
[»] chr1 (13 HSPs)
chr1 (1-358)||(24176384-24176740)
chr1 (317-358)||(26238129-26238170)
chr1 (316-357)||(42325560-42325601)
chr1 (317-361)||(17831545-17831589)
chr1 (3-58)||(24183004-24183059)
chr1 (317-358)||(5376517-5376558)
chr1 (312-361)||(21038079-21038128)
chr1 (317-358)||(36878462-36878503)
chr1 (317-361)||(19637769-19637813)
chr1 (312-356)||(19909293-19909337)
chr1 (317-361)||(20157364-20157408)
chr1 (314-358)||(28674798-28674842)
chr1 (317-361)||(42004961-42005005)
[»] chr2 (7 HSPs)
chr2 (317-361)||(10535773-10535817)
chr2 (316-361)||(18570972-18571017)
chr2 (317-358)||(19573979-19574020)
chr2 (317-358)||(21616763-21616804)
chr2 (317-358)||(40681983-40682024)
chr2 (317-361)||(6249200-6249244)
chr2 (317-361)||(30298461-30298505)
[»] chr5 (15 HSPs)
chr5 (317-363)||(4344743-4344789)
chr5 (317-358)||(21577125-21577166)
chr5 (317-361)||(2577194-2577238)
chr5 (322-361)||(18607111-18607150)
chr5 (319-361)||(2548390-2548432)
chr5 (319-361)||(11596469-11596511)
chr5 (317-358)||(27932236-27932277)
chr5 (317-358)||(28588691-28588732)
chr5 (324-361)||(31264446-31264483)
chr5 (316-361)||(43208288-43208333)
chr5 (317-361)||(2039863-2039907)
chr5 (317-361)||(2419858-2419902)
chr5 (317-361)||(19293437-19293481)
chr5 (327-363)||(21194217-21194253)
chr5 (317-361)||(28296329-28296373)
[»] chr8 (9 HSPs)
chr8 (317-358)||(4611535-4611576)
chr8 (317-361)||(37225757-37225801)
chr8 (322-361)||(3508058-3508097)
chr8 (316-357)||(14227222-14227263)
chr8 (317-358)||(34897086-34897127)
chr8 (317-361)||(12985393-12985437)
chr8 (317-361)||(22770963-22771007)
chr8 (317-361)||(26466562-26466606)
chr8 (317-361)||(40063952-40063996)
[»] chr3 (6 HSPs)
chr3 (317-358)||(16192767-16192808)
chr3 (317-361)||(25074790-25074834)
chr3 (322-361)||(20691325-20691364)
chr3 (322-360)||(21149073-21149111)
chr3 (317-357)||(16789668-16789708)
chr3 (317-361)||(37077359-37077403)
[»] chr7 (6 HSPs)
chr7 (317-361)||(38134420-38134464)
chr7 (317-358)||(29787386-29787427)
chr7 (317-358)||(32308121-32308162)
chr7 (317-361)||(4909152-4909196)
chr7 (317-361)||(7133292-7133336)
chr7 (317-361)||(23930220-23930264)
[»] chr6 (8 HSPs)
chr6 (317-361)||(34446566-34446610)
chr6 (316-358)||(7265610-7265652)
chr6 (316-358)||(7569185-7569227)
chr6 (316-358)||(31579242-31579284)
chr6 (317-358)||(13851737-13851778)
chr6 (317-358)||(19040353-19040394)
chr6 (316-361)||(19602195-19602240)
chr6 (317-361)||(12235533-12235577)
[»] chr4 (20 HSPs)
chr4 (317-361)||(7012067-7012111)
chr4 (317-361)||(18513255-18513299)
chr4 (317-361)||(20743292-20743336)
chr4 (325-361)||(46180950-46180986)
chr4 (323-361)||(31243562-31243600)
chr4 (316-358)||(44796979-44797021)
chr4 (316-361)||(7424670-7424715)
chr4 (317-358)||(8423735-8423776)
chr4 (317-358)||(16402228-16402269)
chr4 (317-358)||(22440617-22440658)
chr4 (317-358)||(24343508-24343549)
chr4 (317-358)||(32910552-32910593)
chr4 (320-361)||(40783961-40784002)
chr4 (318-358)||(903924-903964)
chr4 (317-361)||(5654605-5654649)
chr4 (317-361)||(14465308-14465352)
chr4 (322-358)||(19230326-19230362)
chr4 (317-361)||(34589720-34589764)
chr4 (317-361)||(43299985-43300029)
chr4 (317-361)||(43300617-43300661)
[»] scaffold0022 (1 HSPs)
scaffold0022 (317-358)||(99894-99935)
[»] scaffold0004 (1 HSPs)
scaffold0004 (317-358)||(92808-92849)
[»] scaffold0049 (1 HSPs)
scaffold0049 (314-354)||(63771-63811)


Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 24176740 - 24176384
Alignment:
Q  1 taaaatatacatctaaagtttctgatagctcatatgcaccacatgcatattccgaaaatattgcattagaaagattacacagtgagaagattattatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24176740 taaaatatacatctaaagtttctgatagctcatatgcaccacatgcatattccgaaaatattgcattagaaagattacacagtgaaaagattattatttt 24176641  T
Q  101 tgtcttgtgtgaaactcaaaattttcaattctttgtccttcaggcaataatatttaaattgaaatttgttagagaactactttagaaaattgaagccata 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24176640 tgtcttgtgtgaaactcaaaattttcaattctttatccttcaggcaataatatttaaattgaaatttgttagagaactgctttagaaaattgaagccata 24176541  T
Q  201 gagcttaagactaaatatgagaagaatacttttatcaataacaaaaggaagacagtgacagaagaaacagtatgcatcctatgaaatactgacacaaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24176540 gagcttaagactaaatatgagaagaatacttttatcaataacaaaaggaagacagtgacagaagaaacagtatgcatcctatgaaatactgacacaaaaa 24176441  T
Q  301 cggacaccgatcactaacaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
     ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24176440 tggaca-cgatcactaacaccgataataatttgagaaaataacatcattcagtgtaat 24176384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 26238170 - 26238129
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  26238170 acaccgctaataatttgagaaaataacataattcagtgtaat 26238129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 42325560 - 42325601
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaa 357  Q
    ||||||||||||||||||||||||| |||| |||||||||||    
T  42325560 aacaccgataataatttgagaaaatgacataattcagtgtaa 42325601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 17831589 - 17831545
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||    
T  17831589 acaccgctaataatttgagaaaatcacattattcagtgtaatcat 17831545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 24183059 - 24183004
Alignment:
Q  3 aaatatacatctaaagtttctgatagctcatatgcaccacatgcatattccgaaaa 58  Q
    |||||||  |||||| ||| ||||| ||||||||||||||||||||||||| ||||    
T  24183059 aaatatatctctaaaatttatgatacctcatatgcaccacatgcatattcccaaaa 24183004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 5376558 - 5376517
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||| ||||||||| |||||||||||| ||||||||||||    
T  5376558 acaccgctaataatttaagaaaataacataattcagtgtaat 5376517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 21038079 - 21038128
Alignment:
Q  312 cactaacaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||| |||| ||||||||| ||||||| |||| |||||||||||||||    
T  21038079 cactaataccgctaataatttaagaaaattacataattcagtgtaatcat 21038128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 36878462 - 36878503
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||| ||||||||||||||||| |||| ||||||||||||    
T  36878462 acaccgctaataatttgagaaaatcacataattcagtgtaat 36878503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 19637769 - 19637813
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||||||||||||| ||||||| |||| ||||| |||||||||    
T  19637769 acaccgataataatttaagaaaatgacattattcaatgtaatcat 19637813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 19909293 - 19909337
Alignment:
Q  312 cactaacaccgataataatttgagaaaataacatcattcagtgta 356  Q
    ||||||||||| ||||||||||||||||| |||| | ||||||||    
T  19909293 cactaacaccgctaataatttgagaaaatcacataactcagtgta 19909337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 20157408 - 20157364
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||| ||||||| ||||||||| |||| |||||||||||||||    
T  20157408 acaccgctaataatgtgagaaaatcacataattcagtgtaatcat 20157364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 28674798 - 28674842
Alignment:
Q  314 ctaacaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    ||||||||| ||||||||||||||||| |||| ||||||| ||||    
T  28674798 ctaacaccgttaataatttgagaaaattacataattcagtataat 28674842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 42005005 - 42004961
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||| ||||||||||||||||||| |||| ||| |||||||||||    
T  42005005 acacggataataatttgagaaaatgacataatttagtgtaatcat 42004961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 10535817 - 10535773
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||||||||||||||||||||| |||| |||||||||||||||    
T  10535817 acaccgataataatttgagaaaatgacataattcagtgtaatcat 10535773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 18570972 - 18571017
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||||    
T  18570972 aacaccgataataatttgagaaaatgacataattcaatgtaatcat 18571017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 19573979 - 19574020
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  19573979 acaccgataataatttaagaaaataacataattcagtgtaat 19574020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 21616763 - 21616804
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||| ||||||||||||||||| |||| ||||||||||||    
T  21616763 acaccgctaataatttgagaaaatcacataattcagtgtaat 21616804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 40681983 - 40682024
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||||||||||||||||||||| |||| ||||| ||||||    
T  40681983 acaccgataataatttgagaaaatgacataattcaatgtaat 40682024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 6249200 - 6249244
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||||||||||||||||||||||  || |||||||||| ||||    
T  6249200 acaccgataataatttgagaaaatattataattcagtgtattcat 6249244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 30298505 - 30298461
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||||||||||||| | ||||| |||| |||||||||||||||    
T  30298505 acaccgataataatttaataaaatgacataattcagtgtaatcat 30298461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 4344743 - 4344789
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcattg 363  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||||    
T  4344743 acaccgataataatttgaaaaaatgacataattcagtgtaatcattg 4344789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 21577166 - 21577125
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  21577166 acaccgataataatttgagaaaataacataattaagtgtaat 21577125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 2577238 - 2577194
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||||||||||||||||||||| |||| ||| |||||||||||    
T  2577238 acaccgataataatttgagaaaatgacataatttagtgtaatcat 2577194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 361
Target Start/End: Complemental strand, 18607150 - 18607111
Alignment:
Q  322 gataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  18607150 gataataatttgagaaaataacataattcaatgtaatcat 18607111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 2548390 - 2548432
Alignment:
Q  319 accgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    ||||||||||||| |||||||| |||| |||||||||||||||    
T  2548390 accgataataattagagaaaattacataattcagtgtaatcat 2548432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 361
Target Start/End: Complemental strand, 11596511 - 11596469
Alignment:
Q  319 accgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||||||||||||||||||| |||| ||||| |||||||||    
T  11596511 accgataataatttgagaaaatgacataattcaatgtaatcat 11596469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 27932236 - 27932277
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||| ||||||||||||||||| |||| ||||||||||||    
T  27932236 acaccgctaataatttgagaaaattacataattcagtgtaat 27932277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 28588732 - 28588691
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||| ||||||||||||||||| |||| ||||||||||||    
T  28588732 acaccggtaataatttgagaaaatcacataattcagtgtaat 28588691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 31264446 - 31264483
Alignment:
Q  324 taataatttgagaaaataacatcattcagtgtaatcat 361  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  31264446 taataatttgagaaaatgacataattcagtgtaatcat 31264483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 43208333 - 43208288
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||||||| |||||||||||||| |||| ||||| |||||||||    
T  43208333 aacaccgatagtaatttgagaaaatgacataattcaatgtaatcat 43208288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 2039907 - 2039863
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||| ||||||||||||||||| |||| ||||| |||||||||    
T  2039907 acaccggtaataatttgagaaaatgacatgattcaatgtaatcat 2039863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 2419858 - 2419902
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||| ||||||||||||||||||| |||  |||||||||||||||    
T  2419858 acactgataataatttgagaaaattacacaattcagtgtaatcat 2419902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 19293481 - 19293437
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    ||||| |||||||||| |||||||||||| ||| |||||||||||    
T  19293481 acaccaataataatttaagaaaataacataattaagtgtaatcat 19293437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 21194253 - 21194217
Alignment:
Q  327 taatttgagaaaataacatcattcagtgtaatcattg 363  Q
    |||||||||||||| |||| |||||||||||||||||    
T  21194253 taatttgagaaaatcacataattcagtgtaatcattg 21194217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 28296329 - 28296373
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||||||||||||||||||||| |||| ||||| |||| ||||    
T  28296329 acaccgataataatttgagaaaatgacataattcaatgtactcat 28296373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 4611535 - 4611576
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  4611535 acaccgctaataatttgagaaaataacataattcagtgtaat 4611576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 37225801 - 37225757
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||    
T  37225801 acaccaataataatttgagaaaataacataattcaatgtaatcat 37225757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 361
Target Start/End: Original strand, 3508058 - 3508097
Alignment:
Q  322 gataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  3508058 gataataatttgagaaaataacataattcaatgtaatcat 3508097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 14227222 - 14227263
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaa 357  Q
    |||||| ||||||||||||||||||||||| ||||| |||||    
T  14227222 aacaccaataataatttgagaaaataacataattcaatgtaa 14227263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 34897086 - 34897127
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||| ||||||||||||||||| |||| ||||||||||||    
T  34897086 acaccgctaataatttgagaaaatcacataattcagtgtaat 34897127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 12985393 - 12985437
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    ||||| |||||||||||||||||| |||| ||||| |||||||||    
T  12985393 acacctataataatttgagaaaatcacataattcaatgtaatcat 12985437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 22770963 - 22771007
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||||||||||||||| |||| ||||| ||||| |||||||||    
T  22770963 acaccgataataatttgataaaacaacataattcaatgtaatcat 22771007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 26466606 - 26466562
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||||||||||||||||||||||| || ||||| || ||||||    
T  26466606 acaccgataataatttgagaaaataagataattcaatgcaatcat 26466562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 40063952 - 40063996
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    ||||| |||||||||||||||||| |||| ||||| |||||||||    
T  40063952 acaccaataataatttgagaaaatgacataattcattgtaatcat 40063996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 16192808 - 16192767
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  16192808 acaccgttaataatttgagaaaataacataattcagtgtaat 16192767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 25074790 - 25074834
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||||||||||||||||||||| |||| ||| |||||||||||    
T  25074790 acaccgataataatttgagaaaatgacataattgagtgtaatcat 25074834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 361
Target Start/End: Original strand, 20691325 - 20691364
Alignment:
Q  322 gataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  20691325 gataataatttgagaaaatgacataattcagtgtaatcat 20691364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 21149073 - 21149111
Alignment:
Q  322 gataataatttgagaaaataacatcattcagtgtaatca 360  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  21149073 gataataatttgagaaaatgacataattcagtgtaatca 21149111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 16789708 - 16789668
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaa 357  Q
    |||| ||||||||||||||||||| |||| |||||||||||    
T  16789708 acacagataataatttgagaaaatgacataattcagtgtaa 16789668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 37077359 - 37077403
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    ||||||||||||||||||||| ||||||| ||||| || ||||||    
T  37077359 acaccgataataatttgagaatataacataattcaatggaatcat 37077403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 38134464 - 38134420
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||    
T  38134464 acaccgataataatttgagaaaatgacataattcaatgtaatcat 38134420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 29787427 - 29787386
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||| ||||||||||||||||| |||| ||||||||||||    
T  29787427 acaccgctaataatttgagaaaatcacataattcagtgtaat 29787386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 32308121 - 32308162
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||| ||||||||||||||||| |||| ||||||||||||    
T  32308121 acaccgctaataatttgagaaaatcacataattcagtgtaat 32308162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 4909152 - 4909196
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    ||||| |||||||||||||||||| |||| ||||| |||||||||    
T  4909152 acaccaataataatttgagaaaattacataattcattgtaatcat 4909196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 7133336 - 7133292
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||| ||| ||||||||||||||| |||| |||||||||||||||    
T  7133336 acacagatgataatttgagaaaatgacataattcagtgtaatcat 7133292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 23930220 - 23930264
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||| |||| |||||||||||||| |||| |||||||||||||||    
T  23930220 acacggatagtaatttgagaaaatgacataattcagtgtaatcat 23930264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 34446566 - 34446610
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||| ||||||||||||||||||| |||| |||||||||||||||    
T  34446566 acacggataataatttgagaaaatgacataattcagtgtaatcat 34446610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 358
Target Start/End: Complemental strand, 7265652 - 7265610
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    ||||||| ||||||||||||||||| |||| ||||||||||||    
T  7265652 aacaccgctaataatttgagaaaatcacataattcagtgtaat 7265610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 358
Target Start/End: Complemental strand, 7569227 - 7569185
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    ||||| ||||||||||||||||||| |||| ||||||||||||    
T  7569227 aacacagataataatttgagaaaattacataattcagtgtaat 7569185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 358
Target Start/End: Complemental strand, 31579284 - 31579242
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    ||||||| ||||||||||||||||| |||| ||||||||||||    
T  31579284 aacaccgttaataatttgagaaaatcacataattcagtgtaat 31579242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 13851737 - 13851778
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||| |||||||||||||||||||| | ||||||||||||    
T  13851737 acaccgctaataatttgagaaaataacgtaattcagtgtaat 13851778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 19040353 - 19040394
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||| ||||||||||||||||| |||| ||||||||||||    
T  19040353 acaccgctaataatttgagaaaatcacataattcagtgtaat 19040394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 19602240 - 19602195
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    ||||| ||||||||||||||||||| | || |||||||||||||||    
T  19602240 aacactgataataatttgagaaaatgatataattcagtgtaatcat 19602195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 12235577 - 12235533
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||| |||||||||| |||||||| |||| |||||||||||||||    
T  12235577 acacggataataattagagaaaatgacataattcagtgtaatcat 12235533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 7012067 - 7012111
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||||||||||||||||||||| |||| ||||||||| |||||    
T  7012067 acaccgataataatttgagaaaatgacataattcagtgtgatcat 7012111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 18513299 - 18513255
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||    
T  18513299 acaccgataataatttgagaaaatgacataattcaatgtaatcat 18513255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 20743336 - 20743292
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||| ||||||||||||||||||| |||| |||||||||||||||    
T  20743336 acacggataataatttgagaaaatgacataattcagtgtaatcat 20743292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 361
Target Start/End: Complemental strand, 46180986 - 46180950
Alignment:
Q  325 aataatttgagaaaataacatcattcagtgtaatcat 361  Q
    ||||||||||||||||||||| |||||||||||||||    
T  46180986 aataatttgagaaaataacataattcagtgtaatcat 46180950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 361
Target Start/End: Complemental strand, 31243600 - 31243562
Alignment:
Q  323 ataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  31243600 ataataatttgagaaaatgacataattcagtgtaatcat 31243562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 358
Target Start/End: Complemental strand, 44797021 - 44796979
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||||| ||||||||||||||||||||| ||||| ||||||    
T  44797021 aacaccgacaataatttgagaaaataacataattcaatgtaat 44796979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 7424670 - 7424715
Alignment:
Q  316 aacaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    ||||||||||||||||| ||||||||| || ||| |||||||||||    
T  7424670 aacaccgataataatttaagaaaataatataattgagtgtaatcat 7424715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 8423776 - 8423735
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||| ||||||||||||||||| |||| ||||||||||||    
T  8423776 acaccgctaataatttgagaaaatcacataattcagtgtaat 8423735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 16402269 - 16402228
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||| |||||||||||||||||||||||| || |||||||||    
T  16402269 acacggataataatttgagaaaataacatgatacagtgtaat 16402228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 22440658 - 22440617
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||| ||||||||||||||||| |||| ||||||||||||    
T  22440658 acaccgttaataatttgagaaaatcacataattcagtgtaat 22440617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 24343508 - 24343549
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||| ||||||||||||||||||| |||| ||||||||||||    
T  24343508 acacggataataatttgagaaaattacataattcagtgtaat 24343549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 32910552 - 32910593
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||| ||||||||||||||||||| |||| ||||||||||||    
T  32910552 acacggataataatttgagaaaatgacataattcagtgtaat 32910593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 361
Target Start/End: Original strand, 40783961 - 40784002
Alignment:
Q  320 ccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    ||||||||||||||||| |||||||| |||||| ||||||||    
T  40783961 ccgataataatttgagataataacataattcagcgtaatcat 40784002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 903924 - 903964
Alignment:
Q  318 caccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    ||||| ||||||||||||||||| |||| ||||||||||||    
T  903924 caccgttaataatttgagaaaatcacataattcagtgtaat 903964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 5654649 - 5654605
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||| ||||||||||||||||||| |||| ||||| |||||||||    
T  5654649 acactgataataatttgagaaaatgacataattcaatgtaatcat 5654605  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 14465352 - 14465308
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||||||||||||||||||||| |||| ||||| | |||||||    
T  14465352 acaccgataataatttgagaaaatgacataattcaatttaatcat 14465308  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 358
Target Start/End: Complemental strand, 19230362 - 19230326
Alignment:
Q  322 gataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  19230362 gataataatttgagaaaataacataattcaatgtaat 19230326  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 34589764 - 34589720
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||||||||| ||||||||||||| |||| ||||| |||||||||    
T  34589764 acaccgataacaatttgagaaaatgacataattcaatgtaatcat 34589720  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 43300029 - 43299985
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||| ||||||||||||||||||| |||| ||||| |||||||||    
T  43300029 acacggataataatttgagaaaattacataattcaatgtaatcat 43299985  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 43300617 - 43300661
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaatcat 361  Q
    |||| ||||||||||||||||||| |||| ||||| |||||||||    
T  43300617 acacggataataatttgagaaaattacataattcaatgtaatcat 43300661  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 99894 - 99935
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||||||||||||| |||||||||||| ||||| ||||||    
T  99894 acaccgataataattttagaaaataacataattcaatgtaat 99935  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 92808 - 92849
Alignment:
Q  317 acaccgataataatttgagaaaataacatcattcagtgtaat 358  Q
    |||||| ||||||||||||||||| |||| ||||||||||||    
T  92808 acaccgctaataatttgagaaaattacataattcagtgtaat 92849  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 63771 - 63811
Alignment:
Q  314 ctaacaccgataataatttgagaaaataacatcattcagtg 354  Q
    ||||||||| ||||||||||||||||| |||| ||||||||    
T  63771 ctaacaccgctaataatttgagaaaattacataattcagtg 63811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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