View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0448_high_7 (Length: 298)
Name: NF0448_high_7
Description: NF0448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0448_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 3730999 - 3731196
Alignment:
| Q |
1 |
ctaagttgcctgttgctacagaaaaaatcatggcttaactatacaaaagtcgttttacctcggatcaatagcgtctagcaacacactgagataattagaa |
100 |
Q |
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| T |
3730999 |
ctaagttgcctgttgctacagaaaaaatcatggcttaactatacaaaagtcgttttacctcggatcaatagcctctagcaacacactgagataattagaa |
3731098 |
T |
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| Q |
101 |
cccaaaacctgaaaaaggaatgttggagatttaacataaacacaaaactgtaaaatagaggttgatacaacaaaatatagtaatagttgtataaaatc |
198 |
Q |
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| T |
3731099 |
cccaaaacctgaaaaaggaatgttggagatttaacataaacacaaaactgtaagatagaggttgatacaacaaaatatagtaatagttgtataaaatc |
3731196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 3731194 - 3731247
Alignment:
| Q |
237 |
atccgtacttgaatttttgctactgtgcgttcacttaggaatgccctctctgct |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
3731194 |
atccgtacttgaatttttgctactgtgcgttcacttaggaatgccttcactgct |
3731247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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